CX069822

Overview
NameCX069822
Unique NameCX069822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.394e-17
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 294
            KYDS HG +    +++KD K ++ G   + V   R+P +I W+ +GA+YV+ESTGVFT               V+ISAPSKDAPM+VVGVNE+++ P
Sbjct:   48 KYDSTHGRFD-GSVEIKDGKLVIDGNA-IDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFNP 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.394e-17
Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            LKYD+VHG +    ++ KD K ++ G   +AV   R+P  IPW   GA+YVVESTGVFT               V+ISAPS DAPMFV GVN + YK E
Sbjct:   46 LKYDTVHGRFD-GSVEAKDGKLVVNGHA-IAVSAERDPTSIPWGSAGADYVVESTGVFTTTEAASAHLKGGAKKVIISAPSADAPMFVCGVNLEAYKSE 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.045e-17
Identity = 47/95 (49.47%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYDS H  +K  E+     K  + G K + VF  R+P  IPW K G +YV+ESTGVFT               VVI+APSKDAPMFVVGVNE++Y
Sbjct:   47 KYDSTHKAYK-GEVSASGNKINIDG-KEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEGAQKHIDAGAKKVVITAPSKDAPMFVVGVNEEKY 139          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.045e-17
Identity = 49/99 (49.49%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            LKYDS HG +K  ++KV D   L    K V     ++P  IPW++TGA YVVESTGVFT               VVISAPS DAPMFV+GVN + YK +
Sbjct:   46 LKYDSTHGQFK-GDIKV-DGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMFVMGVNHETYKSD 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.045e-17
Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYDS HGH++   +K ++ K ++ G   + +F  R+P  I WA  GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:   46 KYDSTHGHFR-GTVKAENGKLVINGNA-ITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.045e-17
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 294
            KYDS HG +K  E+ ++D K ++ G+  ++VF    P EIPW   GA YVVESTGVF                VV+SAPS DAPMFV+GVN+ +Y P
Sbjct:   47 KYDSTHGRYK-GEVHMEDGKLIVDGQA-ISVFQCMKPAEIPWGDAGALYVVESTGVFLSIEKASAHIQGGAKRVVVSAPSPDAPMFVMGVNQDKYDP 141          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.201e-17
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            LKYDS HG +K   ++  DE  ++ G+K +     R+P  IPW + GAEY+VESTGVFT               VVISAPS DAPMFV+GVN + YK +
Sbjct:   46 LKYDSQHGQFK-GTIETYDEGLIVNGKK-IRFHTERDPANIPWGQDGAEYIVESTGVFTTQEKASAHLKGGAKKVVISAPSADAPMFVMGVNNETYKKD 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.201e-17
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYDS HGH+K   +K ++ K ++ G   + +F  R+P  I W   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:   46 KYDSTHGHFK-GTVKAENGKLVINGNA-ITIFQERDPSNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.201e-17
Identity = 47/96 (48.96%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            LKYDS HG +  N    +D   L+   K V  +  R+P  IPW +TGA+YVVESTGVFT               V+ISAPS DAPM+V+GVNEK Y
Sbjct:   47 LKYDSTHGIF--NGEIAQDGNDLVINGKKVKFYTERDPAVIPWKETGADYVVESTGVFTTIDKAKAHLQGGAKKVIISAPSADAPMYVMGVNEKSY 140          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.201e-17
Identity = 46/96 (47.92%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            LKYDS HG +K   ++  +E  ++ G+K +  F  R+P  IPW  TGA+Y+VESTGVFT               VVISAPS DAPMFV+GVN   Y
Sbjct:   46 LKYDSTHGQFK-GTIETYEEGLIVNGKK-IRFFAERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPSADAPMFVMGVNNTSY 139          
The following BLAST results are available for this feature:
BLAST of CX069822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
G3P1_SCHPO5.394e-1745.36Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P1_RHIRA5.394e-1748.48Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_PICPA7.045e-1749.47Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_CURLU7.045e-1749.49Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_COLLI7.045e-1747.37Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3PT_DANRE7.045e-1747.42Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P_EMENI9.201e-1747.47Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_COTJA9.201e-1747.37Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_COLLN9.201e-1748.96Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_ASPNG9.201e-1747.92Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13A08-A15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069822 ID=CX069822; Name=CX069822; organism=Citrus sinensis; type=EST; length=299bp
CTTAAGTACGATAGTGTTCACGGTCATTGGAAGCACAACGAGTTGAAGGT
CAAGGACGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCG
GATTCAGGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTAT
GTTGTGGAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCA
CTTGAAGGGTGGTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATG
CTCCCATGTTTGTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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