CX069822

Overview
NameCX069822
Unique NameCX069822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.964e-16
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            L+YDS HG++K   + V+    ++ G+K V  +  R+P  IPW++TGA+Y+VESTGVFT               V+ISAPS DAPM+V+GVN + Y
Sbjct:   46 LRYDSTHGNFK-GTIAVEGSDLVVNGKK-VKFYTERDPSAIPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMYVMGVNNESY 139          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.964e-16
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYDSVHG +K   ++ K  K ++ G K ++VFG ++   IPW+  GAEY+VESTGVFT               V+ISAPS DAPM+V GVN   Y
Sbjct:   47 KYDSVHGRFK-GTVETKGGKLIVDG-KEISVFGEKDAGAIPWSSVGAEYIVESTGVFTTIEKASAHLKGGAKKVIISAPSADAPMYVCGVNLDSY 139          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.789e-16
Identity = 46/96 (47.92%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            LKYDS HG + + E+K ++   L+   K V  +  R+P  IPW +TGA+YVVESTGVFT               V+ISAPS DAPM+V+ VNEK Y
Sbjct:   47 LKYDSTHGIF-NGEIK-QEGNDLVINGKTVKFYTERDPAAIPWKETGADYVVESTGVFTTTDKAKAHLQGGAKKVIISAPSADAPMYVMVVNEKSY 140          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            +YDS HG +K   +K ++ K ++ G K + +F  R+P  I W   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN+ +Y
Sbjct:   46 QYDSTHGKFK-GTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNQDKY 138          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 294
            KYDS HG ++   ++ K  K ++ G   + V   R+P  I W+ +GAEYV+ESTGVFT               V+ISAPSKDAPMFVVGVN +++ P
Sbjct:   48 KYDSTHGRFE-GSVETKGGKLVIDGHS-IDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFNP 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 47/98 (47.96%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            K+DS HG +K   +  +    ++ G+K + VF  R+P  I WA  GAEYVVESTGVFT               VVISAPS DAPMFV GVN   YKP+
Sbjct:   45 KFDSTHGRFK-GTVAAEGGFLVVNGQK-ITVFSERDPANINWASAGAEYVVESTGVFTTIEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYKPD 140          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.329e-15
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            LKYDS HG +K  ++KV  +   + G+K V  +  R+P  IPWA++ A YVVESTGVFT               VVISAPS DAPM+V+GVN + Y  E
Sbjct:   47 LKYDSTHGQFK-GDIKVLSDGLEVNGKK-VKFYTERDPANIPWAESEAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMYVMGVNNETYNGE 143          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.329e-15
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDS HG +   E+  + E  ++ G+K + V+  R+P  IPW K G +YV++STGVF                VVI+APS  APMFVVGVNE +Y P+
Sbjct:   47 KYDSTHGRYS-GEVSHEGENIVIDGKK-IRVYQERDPVNIPWGKDGVDYVIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYTPD 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.735e-15
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            L+YD+ HG++K   ++V D   L+   K V  +  R+P  IPW++TGA+Y+VESTGVFT               V+ISAPS DAPM+V+GVN + Y
Sbjct:   46 LRYDTTHGNFK-GTIEV-DGADLVVNGKKVKFYTERDPAAIPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMYVMGVNNETY 139          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.735e-15
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            +YDS HG +K   +K ++ K ++ G K + +F  R+P  I W   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN  +Y
Sbjct:   36 QYDSTHGKFK-GTVKAENGKLVING-KAITIFQERDPTNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHDKY 128          
The following BLAST results are available for this feature:
BLAST of CX069822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
G3P_SORMA5.964e-1644.79Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_LENED5.964e-1647.37Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P_COLGL7.789e-1647.92Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_CRIGR1.017e-1546.32Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P2_SCHPO1.017e-1545.36Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P2_DROPS1.017e-1547.96Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_SCLSC1.329e-1547.47Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_PICCI1.329e-1543.88Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_NEUCR1.735e-1544.79Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_MESAU1.735e-1546.32Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13A08-A15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069822 ID=CX069822; Name=CX069822; organism=Citrus sinensis; type=EST; length=299bp
CTTAAGTACGATAGTGTTCACGGTCATTGGAAGCACAACGAGTTGAAGGT
CAAGGACGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCG
GATTCAGGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTAT
GTTGTGGAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCA
CTTGAAGGGTGGTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATG
CTCCCATGTTTGTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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