EY720328

Overview
NameEY720328
Unique NameEY720328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY720328 vs. ExPASy Swiss-Prot
Match: SODM_BRAFL (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.355e-38
Identity = 85/147 (57.82%), Postives = 98/147 (66.67%), Query Frame = 2 
Query:  191 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 631
            IS EIMQ+HHQKHH  YV N N A EQL +A++K D + ++ LQ AIKFNGGGH+NHSIFW NL P   GGGEP    L  AI   FGS EA  +KM+A   A+QGSGW WLGLD   K+L +    NQDPL      L PLLGIDV
Sbjct:    2 ISAEIMQVHHQKHHATYVNNLNAAEEQLAEAIHKQDVTKMIALQSAIKFNGGGHINHSIFWNNLCP--SGGGEPT-GPLAEAITRDFGSFEAFKEKMTAATVAVQGSGWGWLGLDPTSKKLRIVACPNQDPL-EGTTGLKPLLGIDV 144
[Close]
BLAST of EY720328 vs. ExPASy Swiss-Prot
Match: SODM1_STAAW (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MW2) GN=sodA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.943e-38
Identity = 82/201 (40.80%), Postives = 117/201 (58.21%), Query Frame = 2 
Query:  149 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLPYKNVKPDYLKNIWNVMDWKYASDVYH 733
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV++W+   ++Y+
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYN 196
[Close]
BLAST of EY720328 vs. ExPASy Swiss-Prot
Match: SODM1_STAAS (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MSSA476) GN=sodA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.943e-38
Identity = 82/201 (40.80%), Postives = 117/201 (58.21%), Query Frame = 2 
Query:  149 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLPYKNVKPDYLKNIWNVMDWKYASDVYH 733
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV++W+   ++Y+
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYN 196
[Close]
BLAST of EY720328 vs. ExPASy Swiss-Prot
Match: SODM1_STAAR (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MRSA252) GN=sodA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.943e-38
Identity = 82/201 (40.80%), Postives = 117/201 (58.21%), Query Frame = 2 
Query:  149 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLPYKNVKPDYLKNIWNVMDWKYASDVYH 733
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV++W+   ++Y+
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYN 196
[Close]
BLAST of EY720328 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.943e-38
Identity = 82/201 (40.80%), Postives = 117/201 (58.21%), Query Frame = 2 
Query:  149 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLPYKNVKPDYLKNIWNVMDWKYASDVYH 733
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV++W+   ++Y+
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYN 196
[Close]
BLAST of EY720328 vs. ExPASy Swiss-Prot
Match: SODM1_STAAM (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodA PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.943e-38
Identity = 82/201 (40.80%), Postives = 117/201 (58.21%), Query Frame = 2 
Query:  149 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLPYKNVKPDYLKNIWNVMDWKYASDVYH 733
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV++W+   ++Y+
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYN 196
[Close]
BLAST of EY720328 vs. ExPASy Swiss-Prot
Match: SODM1_STAAC (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain COL) GN=sodA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.943e-38
Identity = 82/201 (40.80%), Postives = 117/201 (58.21%), Query Frame = 2 
Query:  149 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLPYKNVKPDYLKNIWNVMDWKYASDVYH 733
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV++W+   ++Y+
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYN 196
[Close]
BLAST of EY720328 vs. ExPASy Swiss-Prot
Match: SODM1_STAAB (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.943e-38
Identity = 82/201 (40.80%), Postives = 117/201 (58.21%), Query Frame = 2 
Query:  149 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLPYKNVKPDYLKNIWNVMDWKYASDVYH 733
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV++W+   ++Y+
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYN 196
[Close]
BLAST of EY720328 vs. ExPASy Swiss-Prot
Match: SODM1_STAA8 (Superoxide dismutase [Mn] 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodA PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.943e-38
Identity = 82/201 (40.80%), Postives = 117/201 (58.21%), Query Frame = 2 
Query:  149 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLPYKNVKPDYLKNIWNVMDWKYASDVYH 733
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV++W+   ++Y+
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYN 196
[Close]
BLAST of EY720328 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.943e-38
Identity = 82/201 (40.80%), Postives = 117/201 (58.21%), Query Frame = 2 
Query:  149 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLPYKNVKPDYLKNIWNVMDWKYASDVYH 733
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV++W+   ++Y+
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYN 196
The following BLAST results are available for this feature:
BLAST of EY720328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
SODM_BRAFL1.355e-3857.82Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM1_STAAW3.943e-3840.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAS3.943e-3840.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAR3.943e-3840.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAN3.943e-3840.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAM3.943e-3840.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAC3.943e-3840.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAB3.943e-3840.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAA83.943e-3840.80Superoxide dismutase [Mn] 1 OS=Staphylococcus aure... [more]
SODM1_STAA33.943e-3840.80Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-H10-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720328 ID=EY720328; Name=EY720328; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGCGTCTCGGTTGAATTTCGAACGATCAAGAAACGTCACCG
TTTCATTCGCGATGGCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGC
TTGGGTAAATCCGTAGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCT
GCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAG
AGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTACTAAC
TACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATAC
GTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTC
ATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGA
GGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACGCATTT
TGGTTCTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTT
TGCAGGGCTCTGGATGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGG
CTTGTGGTTGAAACTACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCC
AACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
TACCGTACAAGAATGTCAAACCAGATTATCTGAAAAACATTTGGAACGTA
ATGGACTGGAAGTATGCTAGTGATGTGTATCACAAAGAATGCCCTTGAGC
TTGGAGCTCTTCCTTGACCATGGAGTTCTTCGTTTGATCTGGCGTCTCTC
CTGGGGTGCAAGAGACCAATATACTTGCACCTTTCCCGCTTAAGTGACAA
TTAACCATATTTGGC
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