CX069802

Overview
NameCX069802
Unique NameCX069802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_MYXXA (ATP synthase subunit alpha OS=Myxococcus xanthus GN=atpA PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.994e-26
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K SD+ GAGSLTALP+IETQAGDVSAYIPTNVISITDGQI LET+LF+ G+RPAINVGLSVSRVGS   + A++Q
Sbjct:  303 KLSDEEGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFFAGVRPAINVGLSVSRVGSAAQIKAMKQ 377          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_MAGSA (ATP synthase subunit alpha OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.994e-26
Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D  GAGSLTALPVIETQA DVSAYIPTNVISITDGQI LETELFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  311 KMGDAAGAGSLTALPVIETQANDVSAYIPTNVISITDGQIFLETELFYKGIRPAVNVGLSVSRVGSAAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_GRABC (ATP synthase subunit alpha OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.994e-26
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  GAGSLTALPVIETQAGDVSAYIPTNVISITDGQI LETELF++GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  312 KMNDAHGAGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFFKGIRPAVNVGLSVSRVGSSAQIKAMKQ 386          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_XENLA (ATP synthase subunit alpha, mitochondrial OS=Xenopus laevis GN=atp5a PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.605e-26
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  G GSLTALPVIETQAGDVSAYIPTNVISITDGQI LETELFY+GIRPAINVGLSVSRVGS     A++Q
Sbjct:  346 KMNDHFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQ 420          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_RICCK (ATP synthase subunit alpha OS=Rickettsia canadensis (strain McKiel) GN=atpA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.605e-26
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K SD  G+GSLTALP+IETQAGDVSAYIPTNVISITDGQI LE+ELFY+GIRPA+NVG+SVSRVGS   + A++Q
Sbjct:  311 KMSDAKGSGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFYKGIRPAVNVGISVSRVGSAAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_RAT (ATP synthase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Atp5a1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.605e-26
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  G GSLTALPVIETQAGDVSAYIPTNVISITDGQI LETELFY+GIRPAINVGLSVSRVGS     A++Q
Sbjct:  354 KMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQ 428          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_MOUSE (ATP synthase subunit alpha, mitochondrial OS=Mus musculus GN=Atp5a1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.605e-26
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  G GSLTALPVIETQAGDVSAYIPTNVISITDGQI LETELFY+GIRPAINVGLSVSRVGS     A++Q
Sbjct:  354 KMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQ 428          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_KLULA (ATP synthase subunit alpha, mitochondrial OS=Kluyveromyces lactis GN=ATP1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.605e-26
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K S++ G GSLTALPVIETQ GDVSAYIPTNVISITDGQI LE ELFY+GIRPAINVGLSVSRVGS   V AL+Q
Sbjct:  351 KMSEKNGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQ 425          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_ACICJ (ATP synthase subunit alpha OS=Acidiphilium cryptum (strain JF-5) GN=atpA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.605e-26
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K SD+ GAGSLTALPVIETQAGD+SAYIPTNVISITDGQI LETELF++GIRPA+NVG SVSRVGS   + A++Q
Sbjct:  312 KMSDEFGAGSLTALPVIETQAGDISAYIPTNVISITDGQIFLETELFFKGIRPAVNVGNSVSRVGSAAQIKAMKQ 386          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_YEAST (ATP synthase subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=ATP1 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 3.402e-26
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K S++ G+GSLTALPVIETQ GDVSAYIPTNVISITDGQI LE ELFY+GIRPAINVGLSVSRVGS   V AL+Q
Sbjct:  348 KLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQ 422          
The following BLAST results are available for this feature:
BLAST of CX069802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_MYXXA1.994e-2678.67ATP synthase subunit alpha OS=Myxococcus xanthus G... [more]
ATPA_MAGSA1.994e-2680.00ATP synthase subunit alpha OS=Magnetospirillum mag... [more]
ATPA_GRABC1.994e-2680.00ATP synthase subunit alpha OS=Granulibacter bethes... [more]
ATPA_XENLA2.605e-2681.33ATP synthase subunit alpha, mitochondrial OS=Xenop... [more]
ATPA_RICCK2.605e-2677.33ATP synthase subunit alpha OS=Rickettsia canadensi... [more]
ATPA_RAT2.605e-2681.33ATP synthase subunit alpha, mitochondrial OS=Rattu... [more]
ATPA_MOUSE2.605e-2681.33ATP synthase subunit alpha, mitochondrial OS=Mus m... [more]
ATPA_KLULA2.605e-2681.33ATP synthase subunit alpha, mitochondrial OS=Kluyv... [more]
ATPA_ACICJ2.605e-2678.67ATP synthase subunit alpha OS=Acidiphilium cryptum... [more]
ATPA_YEAST3.402e-2681.33ATP synthase subunit alpha, mitochondrial OS=Sacch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12H04-P8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069802 ID=CX069802; Name=CX069802; organism=Citrus sinensis; type=EST; length=856bp
ATTGTTAATAGCTCGTCTCACTCGCCTATATGGGAGACTTTGGCGAGTCC
CATTTCGTTCGATTTGCTCTAGATGGGAGAGCAAAGTGCGTTGGGATAAT
AGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAAGAGCACCCCCCGTAT
ATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGAACCCATCATCAATTA
ACGCGGATTCGATTCGTTTCTCAATTCGAAAATGAGACTCTAAAATCTCT
AAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCCTACGAAATATAAAGA
AAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAATCCTGCAGTAGCGGCG
GGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCAACGGGTACTGTTTCT
TGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAGCCAATCCACAATTGG
AGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAGGTATAGTACTCTGAA
AAGAAATAAGAATGAAGAAGATAAAACCCCACATTAAGATTTTAATTGGG
TTTTTTCTTTTAAAAATATCATTAGTGGATTCCCATTGGTTAGGAGAACC
CAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTTGGAGCGCGGAAACAT
TCACAATAGAGCCAACGCGACTGACAGATAAGCCGACGTTAATAGCGGGT
CTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACAAATTTGTCCGTCAGT
AATTGAAATAACATTTGTAGGAATATAAGCCGATACATCTCCAGCTTGTG
TTTCAATGACGGGTAAGGCGGTCAAGCTACCTGCACCTGTCTGGTCCGAT
CGTTTC
back to top