CX069802

Overview
NameCX069802
Unique NameCX069802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_LEPIC (ATP synthase subunit alpha OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=atpA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.932e-21
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D+ GAGSLTALP+IETQ G+VSAYIPTNVISITDGQI L++ LF  G RPA++VG+SVSRVGS   + A++Q
Sbjct:  308 KLDDKYGAGSLTALPIIETQEGEVSAYIPTNVISITDGQIYLQSNLFASGNRPAVDVGISVSRVGSAAQIKAMKQ 382          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_LEPBL (ATP synthase subunit alpha OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=atpA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.932e-21
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D+ GAGSLTALP+IETQ G+VSAYIPTNVISITDGQI L++ LF  G RPA++VG+SVSRVGS   + A++Q
Sbjct:  304 KLDDKYGAGSLTALPIIETQEGEVSAYIPTNVISITDGQIYLQSNLFASGNRPAVDVGISVSRVGSAAQIKAMKQ 378          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_LEPBJ (ATP synthase subunit alpha OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=atpA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.932e-21
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D+ GAGSLTALP+IETQ G+VSAYIPTNVISITDGQI L++ LF  G RPA++VG+SVSRVGS   + A++Q
Sbjct:  304 KLDDKYGAGSLTALPIIETQEGEVSAYIPTNVISITDGQIYLQSNLFASGNRPAVDVGISVSRVGSAAQIKAMKQ 378          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_CLOPS (ATP synthase subunit alpha OS=Clostridium perfringens (strain SM101 / Type A) GN=atpA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.932e-21
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K S + G GSLTALP+IET AGDV+AYIPTNVISITDGQI LETELF  G RPA+N G+SVSRVG    + A++Q
Sbjct:  303 KLSKENGGGSLTALPIIETLAGDVTAYIPTNVISITDGQIFLETELFNAGQRPAVNPGISVSRVGGNAQIKAMKQ 377          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_CLOPE (ATP synthase subunit alpha OS=Clostridium perfringens GN=atpA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.932e-21
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K S + G GSLTALP+IET AGDV+AYIPTNVISITDGQI LETELF  G RPA+N G+SVSRVG    + A++Q
Sbjct:  303 KLSKENGGGSLTALPIIETLAGDVTAYIPTNVISITDGQIFLETELFNAGQRPAVNPGISVSRVGGNAQIKAMKQ 377          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_CLOP1 (ATP synthase subunit alpha OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=atpA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.932e-21
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K S + G GSLTALP+IET AGDV+AYIPTNVISITDGQI LETELF  G RPA+N G+SVSRVG    + A++Q
Sbjct:  303 KLSKENGGGSLTALPIIETLAGDVTAYIPTNVISITDGQIFLETELFNAGQRPAVNPGISVSRVGGNAQIKAMKQ 377          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_CLOB8 (ATP synthase subunit alpha OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=atpA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.932e-21
Identity = 50/75 (66.67%), Postives = 61/75 (81.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K S + G GS+TALP+IETQAGDV+AYIPTNVISITDGQI LE++LF  G RPA+N G+SVSRVG    + A++Q
Sbjct:  303 KLSKELGGGSITALPIIETQAGDVTAYIPTNVISITDGQIFLESDLFNAGQRPAVNAGISVSRVGGSAQIKAMKQ 377          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_CHLTE (ATP synthase subunit alpha OS=Chlorobium tepidum GN=atpA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.932e-21
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = -2
Query:  616 GAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 837
            G GSLTALPVIETQAGDVSAYIPTNVISITDGQI LE+ LF  G RPAINVG+SVSRVG    + A+++   T+
Sbjct:  329 GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESNLFNAGQRPAINVGISVSRVGGAAQIKAMKKVAGTL 402          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_CHLL2 (ATP synthase subunit alpha OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=atpA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.932e-21
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = -2
Query:  616 GAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 837
            G GSLTALPVIETQAGDVSAYIPTNVISITDGQI LE+ LF  G RPAINVG+SVSRVG    + A+++   T+
Sbjct:  329 GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESNLFNSGQRPAINVGISVSRVGGAAQIKAMKKVAGTL 402          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_BACV8 (ATP synthase subunit alpha OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=atpA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.932e-21
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = -2
Query:  616 GSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 831
            GSLTALP+IETQAGDVSAYIPTNVISITDGQI LET+LF +G RPAINVG+SVSRVG    + ++++   T+
Sbjct:  337 GSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGFRPAINVGISVSRVGGSAQIKSMKKVAGTL 408          
The following BLAST results are available for this feature:
BLAST of CX069802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_LEPIC1.932e-2168.00ATP synthase subunit alpha OS=Leptospira interroga... [more]
ATPA_LEPBL1.932e-2168.00ATP synthase subunit alpha OS=Leptospira borgpeter... [more]
ATPA_LEPBJ1.932e-2168.00ATP synthase subunit alpha OS=Leptospira borgpeter... [more]
ATPA_CLOPS1.932e-2169.33ATP synthase subunit alpha OS=Clostridium perfring... [more]
ATPA_CLOPE1.932e-2169.33ATP synthase subunit alpha OS=Clostridium perfring... [more]
ATPA_CLOP11.932e-2169.33ATP synthase subunit alpha OS=Clostridium perfring... [more]
ATPA_CLOB81.932e-2166.67ATP synthase subunit alpha OS=Clostridium beijerin... [more]
ATPA_CHLTE1.932e-2171.62ATP synthase subunit alpha OS=Chlorobium tepidum G... [more]
ATPA_CHLL21.932e-2171.62ATP synthase subunit alpha OS=Chlorobium limicola ... [more]
ATPA_BACV81.932e-2170.83ATP synthase subunit alpha OS=Bacteroides vulgatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12H04-P8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069802 ID=CX069802; Name=CX069802; organism=Citrus sinensis; type=EST; length=856bp
ATTGTTAATAGCTCGTCTCACTCGCCTATATGGGAGACTTTGGCGAGTCC
CATTTCGTTCGATTTGCTCTAGATGGGAGAGCAAAGTGCGTTGGGATAAT
AGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAAGAGCACCCCCCGTAT
ATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGAACCCATCATCAATTA
ACGCGGATTCGATTCGTTTCTCAATTCGAAAATGAGACTCTAAAATCTCT
AAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCCTACGAAATATAAAGA
AAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAATCCTGCAGTAGCGGCG
GGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCAACGGGTACTGTTTCT
TGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAGCCAATCCACAATTGG
AGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAGGTATAGTACTCTGAA
AAGAAATAAGAATGAAGAAGATAAAACCCCACATTAAGATTTTAATTGGG
TTTTTTCTTTTAAAAATATCATTAGTGGATTCCCATTGGTTAGGAGAACC
CAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTTGGAGCGCGGAAACAT
TCACAATAGAGCCAACGCGACTGACAGATAAGCCGACGTTAATAGCGGGT
CTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACAAATTTGTCCGTCAGT
AATTGAAATAACATTTGTAGGAATATAAGCCGATACATCTCCAGCTTGTG
TTTCAATGACGGGTAAGGCGGTCAAGCTACCTGCACCTGTCTGGTCCGAT
CGTTTC
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