CX069802

Overview
NameCX069802
Unique NameCX069802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_RHIME (ATP synthase subunit alpha OS=Rhizobium meliloti GN=atpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.688e-25
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K SD+ GAGSLTALPVIETQ  DVSA+IPTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  311 KLSDERGAGSLTALPVIETQGNDVSAFIPTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_EHRCJ (ATP synthase subunit alpha OS=Ehrlichia canis (strain Jake) GN=atpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.688e-25
Identity = 55/75 (73.33%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K SD+ GAGSLTALP+IETQAGDVSAY+PTNVISITDGQI LE+E+FY+G RPA+NVGLSVSRVGS   + ++++
Sbjct:  313 KMSDEKGAGSLTALPIIETQAGDVSAYVPTNVISITDGQIFLESEIFYKGFRPAVNVGLSVSRVGSAAQIKSVKK 387          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_ANASK (ATP synthase subunit alpha OS=Anaeromyxobacter sp. (strain K) GN=atpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.688e-25
Identity = 57/75 (76.00%), Postives = 66/75 (88.00%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K SD+ GAGSLTALP+IETQAGDVSAYIPTNVISITDGQI LE+ LFY+G+RPAINVG+SVSRVG    + A++Q
Sbjct:  303 KLSDKEGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESNLFYQGVRPAINVGISVSRVGGSAQIKAMKQ 377          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_ANAD2 (ATP synthase subunit alpha OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=atpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.688e-25
Identity = 57/75 (76.00%), Postives = 66/75 (88.00%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K SD+ GAGSLTALP+IETQAGDVSAYIPTNVISITDGQI LE+ LFY+G+RPAINVG+SVSRVG    + A++Q
Sbjct:  303 KLSDKEGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESNLFYQGVRPAINVGISVSRVGGSAQIKAMKQ 377          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_XANP2 (ATP synthase subunit alpha OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  GAGSLTALPVIETQA DVSAYIPTNVISITDGQI LE++LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  311 KLNDSLGAGSLTALPVIETQANDVSAYIPTNVISITDGQIFLESDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_SULDN (ATP synthase subunit alpha OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=atpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25
Identity = 60/80 (75.00%), Postives = 66/80 (82.50%), Query Frame = -2
Query:  616 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 855
            K SD+ GAGSLTALP+IETQAGDVSAYIPTNVISITDGQI LETELF  G+RPAINVGLSVSRVG    + A +Q   T+
Sbjct:  305 KVSDERGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETELFNSGVRPAINVGLSVSRVGGAAQIKATKQVAGTL 384          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_RICPR (ATP synthase subunit alpha OS=Rickettsia prowazekii GN=atpA PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25
Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K S + G GSLTALP+IETQAGDVSAYIPTNVISITDGQI LE++LFY+GIRPA+NVG+SVSRVGS   + A++Q
Sbjct:  311 KMSKEKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFYKGIRPAVNVGISVSRVGSAAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_HELPY (ATP synthase subunit alpha OS=Helicobacter pylori GN=atpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D+ GAGSLTALP++ETQAGDVSAYIPTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  304 KLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_HELPS (ATP synthase subunit alpha OS=Helicobacter pylori (strain Shi470) GN=atpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D+ GAGSLTALP++ETQAGDVSAYIPTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  304 KLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_HELPJ (ATP synthase subunit alpha OS=Helicobacter pylori J99 GN=atpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D+ GAGSLTALP++ETQAGDVSAYIPTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  304 KLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378          
The following BLAST results are available for this feature:
BLAST of CX069802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_RHIME1.688e-2577.33ATP synthase subunit alpha OS=Rhizobium meliloti G... [more]
ATPA_EHRCJ1.688e-2573.33ATP synthase subunit alpha OS=Ehrlichia canis (str... [more]
ATPA_ANASK1.688e-2576.00ATP synthase subunit alpha OS=Anaeromyxobacter sp.... [more]
ATPA_ANAD21.688e-2576.00ATP synthase subunit alpha OS=Anaeromyxobacter deh... [more]
ATPA_XANP22.205e-2577.33ATP synthase subunit alpha OS=Xanthobacter autotro... [more]
ATPA_SULDN2.205e-2575.00ATP synthase subunit alpha OS=Sulfurimonas denitri... [more]
ATPA_RICPR2.205e-2574.67ATP synthase subunit alpha OS=Rickettsia prowazeki... [more]
ATPA_HELPY2.205e-2576.00ATP synthase subunit alpha OS=Helicobacter pylori ... [more]
ATPA_HELPS2.205e-2576.00ATP synthase subunit alpha OS=Helicobacter pylori ... [more]
ATPA_HELPJ2.205e-2576.00ATP synthase subunit alpha OS=Helicobacter pylori ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12H04-P8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069802 ID=CX069802; Name=CX069802; organism=Citrus sinensis; type=EST; length=856bp
ATTGTTAATAGCTCGTCTCACTCGCCTATATGGGAGACTTTGGCGAGTCC
CATTTCGTTCGATTTGCTCTAGATGGGAGAGCAAAGTGCGTTGGGATAAT
AGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAAGAGCACCCCCCGTAT
ATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGAACCCATCATCAATTA
ACGCGGATTCGATTCGTTTCTCAATTCGAAAATGAGACTCTAAAATCTCT
AAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCCTACGAAATATAAAGA
AAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAATCCTGCAGTAGCGGCG
GGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCAACGGGTACTGTTTCT
TGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAGCCAATCCACAATTGG
AGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAGGTATAGTACTCTGAA
AAGAAATAAGAATGAAGAAGATAAAACCCCACATTAAGATTTTAATTGGG
TTTTTTCTTTTAAAAATATCATTAGTGGATTCCCATTGGTTAGGAGAACC
CAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTTGGAGCGCGGAAACAT
TCACAATAGAGCCAACGCGACTGACAGATAAGCCGACGTTAATAGCGGGT
CTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACAAATTTGTCCGTCAGT
AATTGAAATAACATTTGTAGGAATATAAGCCGATACATCTCCAGCTTGTG
TTTCAATGACGGGTAAGGCGGTCAAGCTACCTGCACCTGTCTGGTCCGAT
CGTTTC
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