CX069802

Overview
NameCX069802
Unique NameCX069802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_HELPH (ATP synthase subunit alpha OS=Helicobacter pylori (strain HPAG1) GN=atpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D+ GAGSLTALP++ETQAGDVSAYIPTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  304 KLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_HELPG (ATP synthase subunit alpha OS=Helicobacter pylori (strain G27) GN=atpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D+ GAGSLTALP++ETQAGDVSAYIPTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  304 KLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_HELP2 (ATP synthase subunit alpha OS=Helicobacter pylori (strain P12) GN=atpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D+ GAGSLTALP++ETQAGDVSAYIPTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  304 KLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA1_GLUOX (ATP synthase subunit alpha 1 OS=Gluconobacter oxydans GN=atpA1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K SD  G GSLTALPVIETQAGD +AYIPTNVISITDGQI LET+LFYRGIRPA+NVG SVSRVGS   + A++Q
Sbjct:  312 KMSDANGGGSLTALPVIETQAGDTAAYIPTNVISITDGQIFLETDLFYRGIRPAVNVGGSVSRVGSAAQIKAMKQ 386          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_PARL1 (ATP synthase subunit alpha OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.880e-25
Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D+ G GSLTALP+IETQA DVSAYIPTNVISITDGQI LET+LFY+G+RPA+NVGLSVSRVGS   + A++Q
Sbjct:  311 KLNDENGNGSLTALPIIETQANDVSAYIPTNVISITDGQIFLETDLFYQGVRPAVNVGLSVSRVGSSAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_HELAH (ATP synthase subunit alpha OS=Helicobacter acinonychis (strain Sheeba) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.880e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K  D+ GAGSLTALP++ETQAGDVSAYIPTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  304 KVCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_CARHZ (ATP synthase subunit alpha OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.880e-25
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K SD+ G GSLTALP+IETQAGDVSAYIPTNVISITDGQI LE++LFY G+RPA+NVGLSVSRVG    + A++Q
Sbjct:  303 KLSDEYGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIYLESDLFYAGVRPAVNVGLSVSRVGGAAQIKAMKQ 377          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_RHIL3 (ATP synthase subunit alpha OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.761e-25
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  GAGSLTALPVIETQ  DVSA+IPTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  311 KMNDDMGAGSLTALPVIETQGNDVSAFIPTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSAAQIKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_OCHA4 (ATP synthase subunit alpha OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.761e-25
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D+ GAGSLTALPVIETQ  DVSA+IPTNVISITDGQI LET LFY+GIRPA+NVGLSVSRVGS   V A++Q
Sbjct:  311 KLNDENGAGSLTALPVIETQGNDVSAFIPTNVISITDGQIFLETNLFYQGIRPAVNVGLSVSRVGSSAQVKAMKQ 385          
BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPA_MESSB (ATP synthase subunit alpha OS=Mesorhizobium sp. (strain BNC1) GN=atpA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.761e-25
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = -2
Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            K +D  G+GSLTALPVIETQA DVSAYIPTNVISITDGQI LET LF++G+RPA+NVGLSVSRVGS   V A++Q
Sbjct:  311 KMNDDNGSGSLTALPVIETQANDVSAYIPTNVISITDGQIFLETNLFFQGVRPAVNVGLSVSRVGSAAQVKAMKQ 385          
The following BLAST results are available for this feature:
BLAST of CX069802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_HELPH2.205e-2576.00ATP synthase subunit alpha OS=Helicobacter pylori ... [more]
ATPA_HELPG2.205e-2576.00ATP synthase subunit alpha OS=Helicobacter pylori ... [more]
ATPA_HELP22.205e-2576.00ATP synthase subunit alpha OS=Helicobacter pylori ... [more]
ATPA1_GLUOX2.205e-2577.33ATP synthase subunit alpha 1 OS=Gluconobacter oxyd... [more]
ATPA_PARL12.880e-2574.67ATP synthase subunit alpha OS=Parvibaculum lavamen... [more]
ATPA_HELAH2.880e-2576.00ATP synthase subunit alpha OS=Helicobacter acinony... [more]
ATPA_CARHZ2.880e-2574.67ATP synthase subunit alpha OS=Carboxydothermus hyd... [more]
ATPA_RHIL33.761e-2576.00ATP synthase subunit alpha OS=Rhizobium leguminosa... [more]
ATPA_OCHA43.761e-2577.33ATP synthase subunit alpha OS=Ochrobactrum anthrop... [more]
ATPA_MESSB3.761e-2576.00ATP synthase subunit alpha OS=Mesorhizobium sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12H04-P8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069802 ID=CX069802; Name=CX069802; organism=Citrus sinensis; type=EST; length=856bp
ATTGTTAATAGCTCGTCTCACTCGCCTATATGGGAGACTTTGGCGAGTCC
CATTTCGTTCGATTTGCTCTAGATGGGAGAGCAAAGTGCGTTGGGATAAT
AGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAAGAGCACCCCCCGTAT
ATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGAACCCATCATCAATTA
ACGCGGATTCGATTCGTTTCTCAATTCGAAAATGAGACTCTAAAATCTCT
AAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCCTACGAAATATAAAGA
AAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAATCCTGCAGTAGCGGCG
GGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCAACGGGTACTGTTTCT
TGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAGCCAATCCACAATTGG
AGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAGGTATAGTACTCTGAA
AAGAAATAAGAATGAAGAAGATAAAACCCCACATTAAGATTTTAATTGGG
TTTTTTCTTTTAAAAATATCATTAGTGGATTCCCATTGGTTAGGAGAACC
CAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTTGGAGCGCGGAAACAT
TCACAATAGAGCCAACGCGACTGACAGATAAGCCGACGTTAATAGCGGGT
CTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACAAATTTGTCCGTCAGT
AATTGAAATAACATTTGTAGGAATATAAGCCGATACATCTCCAGCTTGTG
TTTCAATGACGGGTAAGGCGGTCAAGCTACCTGCACCTGTCTGGTCCGAT
CGTTTC
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