CX069782 | Citrus Genome Database

Overview


Name	CX069782
Unique Name	CX069782
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	840

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4309	contig	Csv1_Contig4309:40..880.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.467e-21
Identity = 39/107 (36.45%), Postives = 67/107 (62.62%), Query Frame = -3

Query:  533 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL----LLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRL 835
            VAYHE+GHA+ G  +   +P+ K++I+PRG A  G   + P+E+     L ++  L +   + LGGR AE+++ G  +++TGA NDL++V ++    V  +G++ RL
Sbjct:  420 VAYHEAGHALVGALMPDYDPVQKISIIPRGRAG-GLTWFTPSEDRMESGLYSRSYLQNQMAVALGGRIAEEIIFGEEEVTTGASNDLQQVARVARQMVTRFGMSDRL 525

HSP 2 Score: 45.8246 bits (107), Expect = 3.467e-21
Identity = 23/65 (35.38%), Postives = 40/65 (61.54%), Query Frame = -2

Query:  294 KPYSSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFK 488
            + +S +T A ID EV + V +AY R  Q++ E++  + Q+AE+L+EKE +  ++L  +L     K
Sbjct:  547 RDFSDETAAAIDEEVSQLVDQAYQRAKQVLVENRGILDQLAEILVEKETVDSEELQTLLANNNAK 611

[Close]

BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 5.850e-21
Identity = 37/107 (34.58%), Postives = 63/107 (58.88%), Query Frame = -3

Query:  533 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL----LLTKEQLFDMTCMTLGGRAAEQVLLGK--ISTGAQNDLEKVTKMTYAQVAVYGLAKRL 835
            VAYHE+GHA+ G  +   +P+ K++I+PRG A  G   + P+E      L ++  L +   + LG R AE+V+ G+  ++TGA ND  +V+++    V   G +K++
Sbjct:  512 VAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGERVAEEVIFGQDNVTTGASNDFMQVSRVARQMVERLGFSKKI 617

HSP 2 Score: 52.373 bits (124), Expect = 5.850e-21
Identity = 28/85 (32.94%), Postives = 48/85 (56.47%), Query Frame = -2

Query:  321 RVWFSEKVGLLSF------PQREDTFEMSKPYSSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLL 557
            R+ FS+K+G ++       P         K YS  T  ++DAEVRE V +AY R  ++I  H + + ++A+LL+EKE +  ++ +
Sbjct:  610 RLGFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDAEVRELVERAYERATEIITTHIDILHKLAQLLIEKETVDGEEFM 694

[Close]

BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.859e-21
Identity = 38/107 (35.51%), Postives = 64/107 (59.81%), Query Frame = -3

Query:  533 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL----LLTKEQLFDMTCMTLGGRAAEQVLLGK--ISTGAQNDLEKVTKMTYAQVAVYGLAKRL 835
            VAYHE+GHA+ G  +   +P+ K++I+PRG A  G   + P+E      L ++  L +   + LGGR AE+V+ G+  ++TGA ND  +V+++    V   G +K++
Sbjct:  489 VAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEDNVTTGASNDFMQVSRVARQMVERLGFSKKI 594

HSP 2 Score: 49.2914 bits (116), Expect = 5.859e-21
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = -2

Query:  348 RVWFSEKVGLLSF------PQREDTFEMSKPYSSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEK 557
            R+ FS+K+G ++       P         K YS  T  ++D+EVRE V KAY R  Q+I  H + + ++A+LL+EK
Sbjct:  587 RLGFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDSEVRELVEKAYERAKQIITTHIDILHKLAQLLIEK 662

[Close]

BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.623e-21
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = -3

Query:  533 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGLAKRL 835
            VAYHE+GH + G  L +A  + KVTIVPRG A  G+   +P E+ +LL+KE + +     +GGR AE+++    +TGA ND E+ T+M  A V  YG++++L
Sbjct:  446 VAYHEAGHTIVGLVLSNARVVHKVTIVPRGRAG-GYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIFNVQTTGASNDFEQATQMARAMVTEYGMSEKL 546

HSP 2 Score: 35.8094 bits (81), Expect = 7.623e-21
Identity = 30/110 (27.27%), Postives = 49/110 (44.55%), Query Frame = -2

Query:  240 SEKVGLLSFPQREDTFEMSKPYSS---KTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDL--LRVLGERP---FKSSELTNYDRFKQGFEEEE 545
            SEK+G + +           P  S   +T   ID EVR  + +A  +  ++I+ ++E    IAE LL+ E L    +  L   G+ P    + S   +YD  K    +E+
Sbjct:  543 SEKLGPVQYEGNHAMLGAQSPQKSISEQTAYEIDEEVRSLLNEARNKAAEIIQSNRETHKLIAEALLKYETLDSTQIKALYETGKMPEAVEEESHALSYDEVKSKMNDEK 652

[Close]

BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 7.623e-21
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = -3

Query:  533 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGLAKRL 835
            VAYHE+GH + G  L +A  + KVTIVPRG A  G+   +P E+ +LL+KE + +     +GGR AE+++    +TGA ND E+ T+M  A V  YG++++L
Sbjct:  446 VAYHEAGHTIVGLVLSNARVVHKVTIVPRGRAG-GYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIFNVQTTGASNDFEQATQMARAMVTEYGMSEKL 546

HSP 2 Score: 35.8094 bits (81), Expect = 7.623e-21
Identity = 30/110 (27.27%), Postives = 49/110 (44.55%), Query Frame = -2

Query:  240 SEKVGLLSFPQREDTFEMSKPYSS---KTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDL--LRVLGERP---FKSSELTNYDRFKQGFEEEE 545
            SEK+G + +           P  S   +T   ID EVR  + +A  +  ++I+ ++E    IAE LL+ E L    +  L   G+ P    + S   +YD  K    +E+
Sbjct:  543 SEKLGPVQYEGNHAMLGAQSPQKSISEQTAYEIDEEVRSLLNEARNKAAEIIQSNRETHKLIAEALLKYETLDSTQIKALYETGKMPEAVEEESHALSYDEVKSKMNDEK 652

[Close]

BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.672e-20
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = -3

Query:  533 AYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGLAKRL 832
            AYHE GH +A W +   EP+ KVTI+ RG    G A  VP E+  L T+ ++       +GGRAAE+++  + +TGA +D+EK TK+  + V  +G++ +L
Sbjct:  423 AYHEGGHTLAAWAMPDIEPIYKVTILARGRTG-GHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREPTTGAVSDIEKATKIARSMVTEFGMSSKL 522

HSP 2 Score: 41.2022 bits (95), Expect = 1.672e-20
Identity = 28/106 (26.42%), Postives = 49/106 (46.23%), Query Frame = -2

Query:  165 YSSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQGFEEEEKSSAPPETGTVDDGSSPLEPQVAPA 482
            YS +    ID EVR+ +  A+    +++ E+++ +  +A  LLEKE LH+ +L  +      K   LT +D F      ++     P    ++ G    +P   PA
Sbjct:  546 YSHEVARDIDDEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELEGIFASVE-KRPRLTMFDDFGGRIPSDKPPIKTPGELAIERGEPWPQPVPEPA 650

[Close]

BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.673e-20
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = -3

Query:  533 AYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGLAKRL 832
            AYHE GH +A W +   EP+ KVTI+ RG    G A  VP E+  L T+ ++       +GGRAAE+++  + +TGA +D+E+ TK+  + V  +G++ +L
Sbjct:  423 AYHEGGHTLAAWAMPDIEPIYKVTILARGRTG-GHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREPTTGAVSDIEQATKIARSMVTEFGMSSKL 522

HSP 2 Score: 42.743 bits (99), Expect = 1.673e-20
Identity = 28/106 (26.42%), Postives = 50/106 (47.17%), Query Frame = -2

Query:  165 YSSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQGFEEEEKSSAPPETGTVDDGSSPLEPQVAPA 482
            YS +    ID EVR+ +  A+    +++ E+++ +  +A  LLEKE LH+ +L  +  +   K   LT +D F      ++     P    ++ G    +P   PA
Sbjct:  546 YSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFADVE-KRPRLTMFDDFGGRIPSDKPPIKTPGELAIERGEPWPQPVPEPA 650

[Close]

BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.673e-20
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = -3

Query:  533 AYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGLAKRL 832
            AYHE GH +A W +   EP+ KVTI+ RG    G A  VP E+  L T+ ++       +GGRAAE+++  + +TGA +D+E+ TK+  + V  +G++ +L
Sbjct:  423 AYHEGGHTLAAWAMPDIEPIYKVTILARGRTG-GHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREPTTGAVSDIEQATKIARSMVTEFGMSSKL 522

HSP 2 Score: 42.743 bits (99), Expect = 1.673e-20
Identity = 28/106 (26.42%), Postives = 50/106 (47.17%), Query Frame = -2

Query:  165 YSSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQGFEEEEKSSAPPETGTVDDGSSPLEPQVAPA 482
            YS +    ID EVR+ +  A+    +++ E+++ +  +A  LLEKE LH+ +L  +  +   K   LT +D F      ++     P    ++ G    +P   PA
Sbjct:  546 YSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFADVE-KRPRLTMFDDFGGRIPSDKPPIKTPGELAIERGEPWPQPVPEPA 650

[Close]

BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.673e-20
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = -3

Query:  533 AYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGLAKRL 832
            AYHE GH +A W +   EP+ KVTI+ RG    G A  VP E+  L T+ ++       +GGRAAE+++  + +TGA +D+E+ TK+  + V  +G++ +L
Sbjct:  423 AYHEGGHTLAAWAMPDIEPIYKVTILARGRTG-GHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREPTTGAVSDIEQATKIARSMVTEFGMSSKL 522

HSP 2 Score: 42.743 bits (99), Expect = 1.673e-20
Identity = 28/106 (26.42%), Postives = 50/106 (47.17%), Query Frame = -2

Query:  165 YSSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQGFEEEEKSSAPPETGTVDDGSSPLEPQVAPA 482
            YS +    ID EVR+ +  A+    +++ E+++ +  +A  LLEKE LH+ +L  +  +   K   LT +D F      ++     P    ++ G    +P   PA
Sbjct:  546 YSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFADVE-KRPRLTMFDDFGGRIPSDKPPIKTPGELAIERGEPWPQPVPEPA 650

[Close]

BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.804e-20
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = -3

Query:  542 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLA 835
            +AYHE GHA+ G  L+  +P+ KVT++PRG A  G   + PNE   L TK QL       +GGRAAE+ + G  +++TGA  DL++VT+M    V  +G++
Sbjct:  430 IAYHEVGHAIVGTLLKDHDPVQKVTLIPRGQAQ-GLTWFTPNEEQGLTTKAQLMARIAGAMGGRAAEEEVFGDDEVTTGAGGDLQQVTEMARQMVTRFGMS 529

HSP 2 Score: 38.891 bits (89), Expect = 4.804e-20
Identity = 16/59 (27.12%), Postives = 36/59 (61.02%), Query Frame = -2

Query:  306 YSSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGE 482
            YS +    IDA+VR+   + +    ++++E +E V ++ +LL+EKE +  ++  +++ E
Sbjct:  555 YSEEVATRIDAQVRQLAEQGHQMARKIVQEQREVVDRLVDLLIEKETIDGEEFRQIVAE 613

The following BLAST results are available for this feature:

BLAST of CX069782 vs. ExPASy Swiss-Prot

BLAST of CX069782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80


Match Name	E-value	Identity	Description
FTSH4_SYNY3	3.467e-21	36.45	Cell division protease ftsH homolog 4 OS=Synechocy...	[more]
FTSH_TOBAC	5.850e-21	34.58	Cell division protease ftsH homolog, chloroplastic...	[more]
FTSH_CAPAN	5.859e-21	35.51	Cell division protease ftsH homolog, chloroplastic...	[more]
FTSH_STRR6	7.623e-21	43.14	Cell division protease ftsH homolog OS=Streptococc...	[more]
FTSH_STRPN	7.623e-21	43.14	Cell division protease ftsH homolog OS=Streptococc...	[more]
FTSH_MYCLE	1.672e-20	39.60	Cell division protease ftsH homolog OS=Mycobacteri...	[more]
FTSH_MYCTU	1.673e-20	38.61	Cell division protease ftsH homolog OS=Mycobacteri...	[more]
FTSH_MYCTA	1.673e-20	38.61	Cell division protease ftsH homolog OS=Mycobacteri...	[more]
FTSH_MYCBO	1.673e-20	38.61	Cell division protease ftsH homolog OS=Mycobacteri...	[more]
FTSH1_SYNY3	4.804e-20	42.57	Cell division protease ftsH homolog 1 OS=Synechocy...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_12G04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G04-N8-1-4.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX069782 ID=CX069782; Name=CX069782; organism=Citrus sinensis; type=EST; length=840bp
TTTTTTTTTTGTCAGAAAGATCTTAGGGATAAAATTAAATAAAAATTGAA
CACTATGAATATGATTACAAATTACAGAGTACCCTAATTCCAACGGGCGG
GGAAAAAAAAAGAAAAAATCATCTCAAGTATGAATTACAAACATTTAACC
TACATGGTTTCTCATGCCGGAGCAACCTGAGGCTCGAGTGGTGAAGAACC
ATCATCCACGGTTCCAGTCTCTGGGGGCGCTGAGCTCTTCTCTTCCTCTT
CGAAACCTTGCTTGAATCTGTCATAATTTGTGAGCTCACTGGATTTGAAT
GGCCGTTCACCCAGAACTCGAAGCAGATCATCTTGGTGAAGAACTTCCTT
TTCAAGCAATAACTCGGCAATCTGAGCTACATGCTCTTTGTGTTCCTCAA
TAAGTTGGACTGTGCGTACATATGCCTTGCCTACCCATTCTCGAACCTCG
GCATCTATGATTGCCCCAGTCTTGCTACTGTATGGCTTACTCATTTCGAA
TGTGTCTTCTCTTTGTGGGAAAGACAAGAGACCAACCTTTTCGCTAAACC
ATACACGGCAACTTGGGCATAGGTCATCTTTGTTACCTTCTCCAAGTCAT
TTTGAGCTCCAGTAGATATCTTCCCCAACAAAACCTGCTCAGCTGCTCGA
CCGCCAAGGGTCATACACGTCATATCAAAAAGCTGCTCCTTTGTCAGAAG
AAGGTTCTCGTTAGGGACATACTGGGCAAATCCAAGTGCAGCTGTACCTC
GAGGAACAATTGTCACTTTTAACAAGGGTTCTGCATGTTCCAGAAACCAT
CCAGCAACAGCATGGCCGGATTCATGGTAAGCAACTGTCC