CX069782

Overview
NameCX069782
Unique NameCX069782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4309 contig Csv1_Contig4309:40..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.325e-19
Identity = 43/110 (39.09%), Postives = 69/110 (62.73%), Query Frame = -3
Query:  515 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRLVSCLSH 835
            +AYHE+GHAVA  FL H +P+ KVT++PR   A G   ++PN++  L++K Q+       L GRA E+++ G  +++ GA ND+++VT M    V  +G++K    CL +
Sbjct:  429 IAYHEAGHAVAATFLPHHDPVQKVTLIPR-RQAKGLTWFLPNDDQFLVSKSQILSKIIAALAGRAMEEIVFGLPEVTIGAANDIKQVTFMARQMVTKFGMSKVGPICLEN 537          

HSP 2 Score: 33.8834 bits (76), Expect = 2.325e-19
Identity = 14/59 (23.73%), Postives = 34/59 (57.63%), Query Frame = -2
Query:  303 SSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGER 479
            S +  A +D EVR  +   Y++   ++ ++++ + ++   L+EKE +   + +R++ ER
Sbjct:  555 SEEMVAKVDLEVRSILKDCYIQARTILSQNRKLIDRVVNELVEKETIEAKEFMRIVEER 613          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.930e-19
Identity = 41/104 (39.42%), Postives = 70/104 (67.31%), Query Frame = -3
Query:  533 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLGK--ISTGAQNDLEKVTKMTYAQVAVYGLAKRL 835
            +A HE+GHA+ G   +  + + K++I+PRG A LG  Q +P E+  +  K+ L++   + LGGRAAE+V  GK  I+TGA+NDL++ T + Y  V+++G++ ++
Sbjct:  415 IAIHEAGHALMGLVSDDDDKVHKISIIPRGMA-LGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKV 517          

HSP 2 Score: 35.8094 bits (81), Expect = 3.930e-19
Identity = 21/80 (26.25%), Postives = 42/80 (52.50%), Query Frame = -2
Query:  219 IDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQGFEEEEKSSAPPE 458
            ID EV+  + + Y +   ++EE+KE +  + + LLEKE +  ++ + V         EL +  + ++ F+++ KS    E
Sbjct:  547 IDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVF---KLYGIELKDKCKKEELFDKDRKSEENKE 623          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.459e-18
Identity = 40/102 (39.22%), Postives = 67/102 (65.69%), Query Frame = -3
Query:  539 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAK 835
            VAYHE GHA+ G      + + KVT++PRG A  G   ++P+++  L++K+QLF      LGGRAAE+V+ G  +++TGA +DL+++T +    V  +G+++
Sbjct:  478 VAYHEVGHAICGTLTPGHDAVQKVTLIPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGESEVTTGAVSDLQQITGLAKQMVTTFGMSE 578          

HSP 2 Score: 36.1946 bits (82), Expect = 1.459e-18
Identity = 20/58 (34.48%), Postives = 30/58 (51.72%), Query Frame = -2
Query:  306 SSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGE 479
            S K    ID  V+    KAY   +  I  ++E + +I E+LLEKE +  D+   +L E
Sbjct:  604 SEKLANDIDTAVKTLSDKAYEIALSQIRNNREAMDKIVEILLEKETMSGDEFRAILSE 661          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.897e-18
Identity = 39/101 (38.61%), Postives = 65/101 (64.36%), Query Frame = -3
Query:  542 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVP-NENLLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLA 835
            VAYHE GHA+ G      +P+ KVT++PRG A  G   ++P ++  L++++QLF      LGGRAAE+++ G  +++TGA  DL+++T +    V  +G++
Sbjct:  472 VAYHEVGHAICGTLTPGHDPVQKVTLIPRGQAR-GLTWFIPMDDPTLISRQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS 571          

HSP 2 Score: 35.8094 bits (81), Expect = 1.897e-18
Identity = 20/58 (34.48%), Postives = 30/58 (51.72%), Query Frame = -2
Query:  306 SSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGE 479
            S K    ID  V+    +AY   +  I  ++E + +I E+LLEKE L  D+   +L E
Sbjct:  599 SEKLAEDIDTAVKRLSDEAYEIALSQIRSNREAMDKIVEVLLEKETLSGDEFRAILSE 656          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.668e-18
Identity = 42/101 (41.58%), Postives = 71/101 (70.30%), Query Frame = -3
Query:  536 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGLAKR 835
            +AYHE+GHA+AG F + A+ + K+TI+PRGT+ALG+  ++P ++  ++T++QL     + L GRAAE V  G++STGA ND+ + T +    +  YG++++
Sbjct:  399 IAYHETGHALAGTFTKGADKVHKITIIPRGTSALGYTFHIPEDDRHIVTEQQLLAEVDVLLSGRAAEFVAFGEVSTGAGNDISRATDIVRKMITDYGMSEK 499          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.186e-18
Identity = 44/108 (40.74%), Postives = 66/108 (61.11%), Query Frame = -3
Query:  521 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYV-PNENLLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRLVSCL 835
            +AYHE+GHA+    L +  P+ KVT++PR   A G   ++  NE  LL+K QL  M  + LGGRAAE+ + G  +++TGA NDL++VT +    V  +G++     CL
Sbjct:  412 IAYHETGHALTATLLPNHPPVQKVTLIPR-RQAKGLTWFMQDNERDLLSKSQLMSMIMVALGGRAAEEAVFGNAEVTTGASNDLQQVTNLARQMVTRFGMSSLGPLCL 518          

HSP 2 Score: 31.5722 bits (70), Expect = 9.186e-18
Identity = 16/58 (27.59%), Postives = 34/58 (58.62%), Query Frame = -2
Query:  306 SSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGE 479
            S +  A IDA+VR  +   Y + ++L++ ++  + +I E L+EKE L   +  +++ +
Sbjct:  538 SEEVIAQIDAQVRGMIEACYEKVLELMQANRVVMDRIVEELMEKETLDGKEFRQLVSQ 595          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.006e-17
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  533 AYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRL 832
            AYHESGHA+     + A P+ K TI+PRG+A     Q   N+   ++K QL     + +GGR AE+++ G   I+TGA +DL + T++    V+  G+++ +
Sbjct:  618 AYHESGHAIVALNTKGAHPIHKATIMPRGSALGMVTQLPSNDETSVSKRQLLARLDVCMGGRVAEELIFGLDHITTGASSDLSQATELAQYMVSSCGMSEAI 719          

HSP 2 Score: 39.2762 bits (90), Expect = 2.006e-17
Identity = 21/56 (37.50%), Postives = 34/56 (60.71%), Query Frame = -2
Query:  312 SSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVL 479
            SS   + IDAEV + + +AY R   L++ H++ +  +A  LLE E L  +D+ R+L
Sbjct:  729 SSDMQSRIDAEVVKLLREAYERVKSLLKRHEKQLHTLANALLEYETLTAEDIKRIL 784          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.392e-17
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = -3
Query:  542 AYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGK--ISTGAQNDLEKVTKMTYAQVAVYGLA 832
            AYHESGHA+     + A P+ K TI+PRG +ALG    +P+++   ++K+QL     + +GGR AE+++ G+  ++TGA+NDL   T++    V+  G++
Sbjct:  599 AYHESGHAIVALNTQGAHPIHKATILPRG-SALGMVTQLPSQDETSISKKQLLARLDVCMGGRVAEELIFGEDNVTTGARNDLHTATELAQYMVSNCGMS 697          

HSP 2 Score: 38.1206 bits (87), Expect = 3.392e-17
Identity = 18/49 (36.73%), Postives = 34/49 (69.39%), Query Frame = -2
Query:  312 IDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVL 458
            IDAEV + + +AY R  +L+++H++ +  +A  LLE+E L  D++ +V+
Sbjct:  717 IDAEVVKLLREAYGRVKRLLKKHEKQLHALANALLERETLTADEINKVV 765          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = -3
Query:  542 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGLA 835
            VAYHESGHAV     + +  + KV+I+PRG AALG+    P EN  L+ K +L     + LGGRAAE+V L +ISTGA NDLE+ T +    V+ YG++
Sbjct:  431 VAYHESGHAVISEMTKGSTRVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEEVFLEEISTGASNDLERATDIIKGMVSYYGMS 529          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.748e-17
Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = -3
Query:  539 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN--LLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAK 835
            VAYHE GHAV        + + KVT++PRG A  G   ++P E    L++++Q+F      LGGRAAE+V+ G  +++TGA  DL++VT++    V  +G+++
Sbjct:  480 VAYHEIGHAVCATLTAGHDEVQKVTLIPRGQAR-GLTWFLPGEEDPALVSRQQIFAGIVGGLGGRAAEEVVFGEPEVTTGAAGDLQQVTRVARRMVTAFGMSE 581          

HSP 2 Score: 35.4242 bits (80), Expect = 5.748e-17
Identity = 19/58 (32.76%), Postives = 31/58 (53.45%), Query Frame = -2
Query:  306 SSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGE 479
            S +  A IDA VR  V +AY      +  ++  + Q+ ++L+EKE L  D+   +L E
Sbjct:  608 SERLAADIDAAVRTIVDEAYEVAKAHVRRNRAAIDQLVDVLMEKETLGGDEFRAILSE 665          
The following BLAST results are available for this feature:
BLAST of CX069782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
FTSH_CYACA2.325e-1939.09Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH_AQUAE3.930e-1939.42Cell division protease ftsH homolog OS=Aquifex aeo... [more]
FTSH8_ARATH1.459e-1839.22Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ORYSJ1.897e-1838.61Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH_TREPA5.668e-1841.58Cell division protease ftsH homolog OS=Treponema p... [more]
FTSH_CYAME9.186e-1840.74Cell division protease ftsH homolog OS=Cyanidiosch... [more]
FTSHB_ARATH2.006e-1736.27Cell division protease ftsH homolog 11, chloroplas... [more]
FTSH9_ORYSJ3.392e-1738.00Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH_HELPJ3.674e-1748.48Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH6_ORYSJ5.748e-1738.83Cell division protease ftsH homolog 6, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12G04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G04-N8-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069782 ID=CX069782; Name=CX069782; organism=Citrus sinensis; type=EST; length=840bp
TTTTTTTTTTGTCAGAAAGATCTTAGGGATAAAATTAAATAAAAATTGAA
CACTATGAATATGATTACAAATTACAGAGTACCCTAATTCCAACGGGCGG
GGAAAAAAAAAGAAAAAATCATCTCAAGTATGAATTACAAACATTTAACC
TACATGGTTTCTCATGCCGGAGCAACCTGAGGCTCGAGTGGTGAAGAACC
ATCATCCACGGTTCCAGTCTCTGGGGGCGCTGAGCTCTTCTCTTCCTCTT
CGAAACCTTGCTTGAATCTGTCATAATTTGTGAGCTCACTGGATTTGAAT
GGCCGTTCACCCAGAACTCGAAGCAGATCATCTTGGTGAAGAACTTCCTT
TTCAAGCAATAACTCGGCAATCTGAGCTACATGCTCTTTGTGTTCCTCAA
TAAGTTGGACTGTGCGTACATATGCCTTGCCTACCCATTCTCGAACCTCG
GCATCTATGATTGCCCCAGTCTTGCTACTGTATGGCTTACTCATTTCGAA
TGTGTCTTCTCTTTGTGGGAAAGACAAGAGACCAACCTTTTCGCTAAACC
ATACACGGCAACTTGGGCATAGGTCATCTTTGTTACCTTCTCCAAGTCAT
TTTGAGCTCCAGTAGATATCTTCCCCAACAAAACCTGCTCAGCTGCTCGA
CCGCCAAGGGTCATACACGTCATATCAAAAAGCTGCTCCTTTGTCAGAAG
AAGGTTCTCGTTAGGGACATACTGGGCAAATCCAAGTGCAGCTGTACCTC
GAGGAACAATTGTCACTTTTAACAAGGGTTCTGCATGTTCCAGAAACCAT
CCAGCAACAGCATGGCCGGATTCATGGTAAGCAACTGTCC
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