CX069782

Overview
NameCX069782
Unique NameCX069782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4309 contig Csv1_Contig4309:40..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.267e-17
Identity = 48/99 (48.48%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  542 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGLA 835
            VAYHESGHAV     + +  + KV+I+PRG AALG+    P EN  L+ K +L     + LGGRAAE V L +ISTGA NDLE+ T +    V+ YG++
Sbjct:  431 VAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDVFLEEISTGASNDLERATDIIKGMVSYYGMS 529          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.267e-17
Identity = 48/99 (48.48%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  542 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGLA 835
            VAYHESGHAV     + +  + KV+I+PRG AALG+    P EN  L+ K +L     + LGGRAAE V L +ISTGA NDLE+ T +    V+ YG++
Sbjct:  437 VAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDVFLQEISTGASNDLERATDIIKGMVSYYGMS 535          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.482e-17
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = -3
Query:  542 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLA 835
            +AYHE GHA+ G  L+  + + K+T+ PRG  A G   + P E+  LL++  L      TLGGRAAEQV+ G  +++TGA +DL++VT +    V  +G++
Sbjct:  444 IAYHEVGHAITGSVLKSHDEVEKITLTPRG-GAKGLTWFTPEEDQSLLSRSALLARIITTLGGRAAEQVIFGEPEVTTGASSDLQQVTNLARQMVTRFGMS 543          

HSP 2 Score: 31.9574 bits (71), Expect = 7.482e-17
Identity = 15/57 (26.32%), Postives = 31/57 (54.39%), Query Frame = -2
Query:  312 YSSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVL 482
            Y+      ID EVR+ +   Y + ++++ +++  +  I E LL+KE +  D+   +L
Sbjct:  570 YAENIADRIDDEVRKIITYCYEKAIEIVLDNRVVIDLIVEKLLDKETMDGDEFRELL 626          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = -3
Query:  533 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGLAKRL 835
            VAYHE GH V G  L+ A+ + KVTIVPRG A  G+A  +P E+    TK +L D     LGGR AE+++ G++STGA ND ++ T +    V  +G++++L
Sbjct:  420 VAYHEGGHTVIGLVLDEADMVHKVTIVPRGQAG-GYAVMLPREDRYFQTKPELLDKIVGLLGGRVAEEIIFGEVSTGAHNDFQRATNIARRMVTEFGMSEKL 520          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.396e-16
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = -3
Query:  533 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGLAKRL 835
            VA+HE+GH V G  LE+A+ + KVTIVPRG A  G+A  +P E+   +T+ +L D     LGGR AE+V  G++STGA ND ++ T +    V  YG++++L
Sbjct:  425 VAWHEAGHTVVGVKLENADMVHKVTIVPRGMAG-GYAVMLPKEDRYFMTQPELLDKIIGLLGGRVAEEVTFGEVSTGAHNDFQRATGIARKMVTEYGMSEKL 525          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.136e-16
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = -3
Query:  542 AYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVP-NENLLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLA 832
            AYHE GHA+ G +   A P+ K TI+PRG  ALG  Q +P  +     +EQ+     + + GR AE+++ G  K+++GA +D++  T +  A V   GL+
Sbjct:  415 AYHEGGHALVGLYCPAASPIHKATIIPRGN-ALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLS 513          

HSP 2 Score: 37.3502 bits (85), Expect = 2.136e-16
Identity = 22/90 (24.44%), Postives = 40/90 (44.44%), Query Frame = -2
Query:  210 SSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQGFEEEEKSSAPPETGT 479
            S  T  +IDAEV+  + + Y     ++ +H + +  +A  L+E E L    +  +L  R   S E   +        + +K  +P +T T
Sbjct:  538 SEATAELIDAEVKRIITQGYEFAKDILTKHIDQLHTLANALIEYETLSGQQIKNLLSGRALDSEEENKFPFNDSSTIKIDKEKSPEKTKT 627          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.660e-15
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = -3
Query:  539 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAK 835
            VAYHE GHA+     E  +P+ KVT+VPRG A  G   ++P E+  L++K+QLF      LGGRAAE V+ G  +I+TGA  DL++VT++    V ++G+++
Sbjct:  482 VAYHEVGHAICATLTEGHDPVQKVTLVPRGQAR-GLTWFLPGEDPTLVSKQQLFARIVGGLGGRAAEDVIFGEPEITTGAAGDLQQVTEIARQMVTMFGMSE 582          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.464e-13
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  533 AYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRL 832
            AYHE+GH +   + + A PL KVTI+PRG +    A     ++  LTK Q+     + +GGR AE+++ G  K++TGA +DL K T++    V V+G++ ++
Sbjct:  460 AYHEAGHTLVSLYTKDATPLHKVTIIPRGQSLGHTAMLPEKDSYQLTKAQMLATLDVMMGGRVAEELIFGDDKVTTGAADDLSKATQLAVQMVKVFGMSDKV 561          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.464e-13
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = -3
Query:  467 TVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLL-LTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRLVSCLSHKEK---------THSK*VSHTVARL 838
            + AYHE+GH + G  +   +P  KVTI+PRG  ALG   ++P +++L + K +L        GGR AE+++ G   +STGA ND++  T +    V  +G +K+L   L  +E+         T SK +S   AR+
Sbjct:  410 STAYHEAGHVIVGRLVPEHDPAHKVTIIPRG-RALGVTFFLPKDDVLSINKNKLESQISTLYGGRLAEEIIYGVNNVSTGAHNDIKVATNLARNMVTQWGFSKKLGPLLYSEEEGEIFLGRTVTKSKHMSDETARI 544          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.464e-13
Identity = 40/101 (39.60%), Postives = 65/101 (64.36%), Query Frame = -3
Query:  542 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLA 835
            VAYHE GHAV G      + + KVT++PRG A  G   ++P+++  L++K+QLF      LGGRAAE+++ G  +++TGA  DL+++T +    V  +G++
Sbjct:  485 VAYHEVGHAVCGTLTPGHDAVQKVTLIPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGDSEVTTGAVGDLQQITGLARQMVTTFGMS 584          
The following BLAST results are available for this feature:
BLAST of CX069782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
FTSH_HELPY6.267e-1748.48Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELFE6.267e-1748.48Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_ODOSI7.482e-1740.59Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH_BACSU8.184e-1744.12Cell division protease ftsH homolog OS=Bacillus su... [more]
FTSH_BACPF1.396e-1645.10Cell division protease ftsH homolog OS=Bacillus ps... [more]
FTSH_RICCN2.136e-1637.00Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH6_ARATH7.660e-1544.12Cell division protease ftsH homolog 6, chloroplast... [more]
YME1_CAEEL2.464e-1337.25Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]
FTSH_BUCBP2.464e-1334.56Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH2_ARATH2.464e-1339.60Cell division protease ftsH homolog 2, chloroplast... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12G04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G04-N8-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069782 ID=CX069782; Name=CX069782; organism=Citrus sinensis; type=EST; length=840bp
TTTTTTTTTTGTCAGAAAGATCTTAGGGATAAAATTAAATAAAAATTGAA
CACTATGAATATGATTACAAATTACAGAGTACCCTAATTCCAACGGGCGG
GGAAAAAAAAAGAAAAAATCATCTCAAGTATGAATTACAAACATTTAACC
TACATGGTTTCTCATGCCGGAGCAACCTGAGGCTCGAGTGGTGAAGAACC
ATCATCCACGGTTCCAGTCTCTGGGGGCGCTGAGCTCTTCTCTTCCTCTT
CGAAACCTTGCTTGAATCTGTCATAATTTGTGAGCTCACTGGATTTGAAT
GGCCGTTCACCCAGAACTCGAAGCAGATCATCTTGGTGAAGAACTTCCTT
TTCAAGCAATAACTCGGCAATCTGAGCTACATGCTCTTTGTGTTCCTCAA
TAAGTTGGACTGTGCGTACATATGCCTTGCCTACCCATTCTCGAACCTCG
GCATCTATGATTGCCCCAGTCTTGCTACTGTATGGCTTACTCATTTCGAA
TGTGTCTTCTCTTTGTGGGAAAGACAAGAGACCAACCTTTTCGCTAAACC
ATACACGGCAACTTGGGCATAGGTCATCTTTGTTACCTTCTCCAAGTCAT
TTTGAGCTCCAGTAGATATCTTCCCCAACAAAACCTGCTCAGCTGCTCGA
CCGCCAAGGGTCATACACGTCATATCAAAAAGCTGCTCCTTTGTCAGAAG
AAGGTTCTCGTTAGGGACATACTGGGCAAATCCAAGTGCAGCTGTACCTC
GAGGAACAATTGTCACTTTTAACAAGGGTTCTGCATGTTCCAGAAACCAT
CCAGCAACAGCATGGCCGGATTCATGGTAAGCAACTGTCC
back to top