CX069782

Overview
NameCX069782
Unique NameCX069782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.170e-13
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = -3
Query:  542 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLA 835
            +AYHE GHA+ G      +P+ KVT++PRG A  G   + P+E+  L+T+ Q+       LGGR AE+V+ G  +++TGA ND+EK+T +    V   G++
Sbjct:  469 IAYHEVGHALIGTLCPGHDPVEKVTLIPRGQAQ-GLTWFTPDEDQSLMTRNQMIARIAGLLGGRVAEEVIFGDDEVTTGAGNDIEKITYLARQMVTKLGMS 568          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = -3
Query:  533 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL----LLTKEQLFDMTCMTLGGRAAEQVLLGK--ISTGAQNDLEKVTKMTYAQVAVYGLAKRL 835
            VAYHE+GHA+ G  +   +P+ K++I+PRG A  G   + P+E      L ++  L +   + LGGR AE+V+ G+  ++TGA ND  +V+++    V  +G +K++
Sbjct:  491 VAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKI 596          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 39/103 (37.86%), Postives = 63/103 (61.17%), Query Frame = -3
Query:  533 AYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVP-NENLLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRL 832
            AYHESGHA+  ++ + A P+ K TI+PRG   LG    +P N+    T+ QL     +++GGR AE+++ G   I+TGA +D +  TK+    V  +G++++L
Sbjct:  539 AYHESGHAIIAYYTKDAMPINKATIMPRG-PTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKL 640          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 39/103 (37.86%), Postives = 63/103 (61.17%), Query Frame = -3
Query:  533 AYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVP-NENLLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRL 832
            AYHESGHA+  ++ + A P+ K TI+PRG   LG    +P N+    T+ QL     +++GGR AE+++ G   I+TGA +D +  TK+    V  +G++++L
Sbjct:  597 AYHESGHAIIAYYTKDAMPINKATIMPRG-PTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKL 698          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = -3
Query:  533 AYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN-ENLLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRL 832
            AYHE GHA+   F ++A    K TI+PRG ++LG    +P+ +    T+E+   M  +T+GGRAAE++L G  KI++GA ND++K T++    V  +G++ R+
Sbjct:  528 AYHEGGHALVALFTKNAMRPYKATIMPRG-SSLGMTISLPDMDKDSWTREEYLAMLDVTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRMVTEFGMSDRI 629          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = -3
Query:  506 TVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTL-GGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRLVSCLSHKEK 838
            + AYHE+GHA+ G  +   +P+ KVTI+PRG  ALG   ++P  + +    Q  +    TL GGR AE+++ G   +STGA ND++  T +    V  +G +++L   L  +E+
Sbjct:  410 STAYHEAGHAIIGRLVPEHDPVHKVTIIPRG-RALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEE 522          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = -3
Query:  506 TVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTL-GGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRLVSCLSHKEK 838
            + AYHE+GHA+ G  +   +P+ KVTI+PRG  ALG   ++P  + +    Q  +    TL GGR AE+++ G   +STGA ND++  T +    V  +G +++L   L  +E+
Sbjct:  410 STAYHEAGHAIIGRLVPEHDPVHKVTIIPRG-RALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEE 522          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = -3
Query:  506 TVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTL-GGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRLVSCLSHKEK 838
            + AYHE+GHA+ G  +   +P+ KVTI+PRG  ALG   ++P  + +    Q  +    TL GGR AE+++ G   +STGA ND++  T +    V  +G +++L   L  +E+
Sbjct:  410 STAYHEAGHAIIGRLVPEHDPVHKVTIIPRG-RALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEE 522          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = -3
Query:  506 TVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTL-GGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRLVSCLSHKEK 838
            + AYHE+GHA+ G  +   +P+ KVTI+PRG  ALG   ++P  + +    Q  +    TL GGR AE+++ G   +STGA ND++  T +    V  +G +++L   L  +E+
Sbjct:  410 STAYHEAGHAIIGRLVPEHDPVHKVTIIPRG-RALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEE 522          
BLAST of CX069782 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = -3
Query:  506 TVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTL-GGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGLAKRLVSCLSHKEK 838
            + AYHE+GHA+ G  +   +P+ KVTI+PRG  ALG   ++P  + +    Q  +    TL GGR AE+++ G   +STGA ND++  T +    V  +G +++L   L  +E+
Sbjct:  410 STAYHEAGHAIIGRLVPEHDPVHKVTIIPRG-RALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEE 522          
The following BLAST results are available for this feature:
BLAST of CX069782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
FTSH2_SYNY37.170e-1339.60Cell division protease ftsH homolog 2 OS=Synechocy... [more]
FTSH1_ORYSJ1.597e-1235.51Cell division protease ftsH homolog 1, chloroplast... [more]
YMEL1_MOUSE2.086e-1237.86ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
YMEL1_HUMAN2.086e-1237.86ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
YME1_SCHPO2.086e-1239.81Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
FTSH_SHIFL2.086e-1235.96Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_SALTY2.086e-1235.96Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI2.086e-1235.96Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_ECOLI2.086e-1235.96Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO572.086e-1235.96Cell division protease ftsH OS=Escherichia coli O1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12G04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G04-N8-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069782 ID=CX069782; Name=CX069782; organism=Citrus sinensis; type=EST; length=840bp
TTTTTTTTTTGTCAGAAAGATCTTAGGGATAAAATTAAATAAAAATTGAA
CACTATGAATATGATTACAAATTACAGAGTACCCTAATTCCAACGGGCGG
GGAAAAAAAAAGAAAAAATCATCTCAAGTATGAATTACAAACATTTAACC
TACATGGTTTCTCATGCCGGAGCAACCTGAGGCTCGAGTGGTGAAGAACC
ATCATCCACGGTTCCAGTCTCTGGGGGCGCTGAGCTCTTCTCTTCCTCTT
CGAAACCTTGCTTGAATCTGTCATAATTTGTGAGCTCACTGGATTTGAAT
GGCCGTTCACCCAGAACTCGAAGCAGATCATCTTGGTGAAGAACTTCCTT
TTCAAGCAATAACTCGGCAATCTGAGCTACATGCTCTTTGTGTTCCTCAA
TAAGTTGGACTGTGCGTACATATGCCTTGCCTACCCATTCTCGAACCTCG
GCATCTATGATTGCCCCAGTCTTGCTACTGTATGGCTTACTCATTTCGAA
TGTGTCTTCTCTTTGTGGGAAAGACAAGAGACCAACCTTTTCGCTAAACC
ATACACGGCAACTTGGGCATAGGTCATCTTTGTTACCTTCTCCAAGTCAT
TTTGAGCTCCAGTAGATATCTTCCCCAACAAAACCTGCTCAGCTGCTCGA
CCGCCAAGGGTCATACACGTCATATCAAAAAGCTGCTCCTTTGTCAGAAG
AAGGTTCTCGTTAGGGACATACTGGGCAAATCCAAGTGCAGCTGTACCTC
GAGGAACAATTGTCACTTTTAACAAGGGTTCTGCATGTTCCAGAAACCAT
CCAGCAACAGCATGGCCGGATTCATGGTAAGCAACTGTCC
back to top