CX069781

Overview
NameCX069781
Unique NameCX069781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4309 contig Csv1_Contig4309:1..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX069781 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 40/115 (34.78%), Postives = 65/115 (56.52%), Query Frame = 3 
Query:    3 EKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN-ENLLLTKEQLFDMTCMTLGGRAAEQVLLGKIST--GAQNDLEKVTKMTYAQVAVYGLA 338
            E+K  V++   R+  A+HE+GHA+   +   A PL K TI+PRG  ALG    +P  + + +TK +      + +GG+ AE+++ GK +T  G  +DL+  T    A V  YG++
Sbjct:  523 ERKTMVLTDAARKATAFHEAGHAIMAKYTNGATPLYKATILPRG-RALGITFQLPEMDKVDITKRECQARLDVCMGGKIAEELIYGKDNTTSGCGSDLQSATGTARAMVTQYGMS 636
The following BLAST results are available for this feature:
BLAST of CX069781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
YME1_YEAST2.479e-1134.78Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12G04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G04-N8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069781 ID=CX069781; Name=CX069781; organism=Citrus sinensis; type=EST; length=882bp
CGGAGAAGAAGAATAAGGTTATAAGCAAGTTGGAGCGCCGGACAGTTGCT
TACCATGAATCCGGCCATGCTGTTGCTGGATGGTTTCTGGAACATGCAGA
ACCCTTGTTAAAAGTGACAATTGTTCCTCGAGGTACAGCTGCACTTGGAT
TTGCCCAGTATGTCCCTAACGAGAACCTTCTTCTGACAAAGGAGCAGCTT
TTTGATATGACGTGTATGACCCTTGGCGGTCGAGCAGCTGAGCAGGTTTT
GTTGGGGAAGATATCTACTGGAGCTCAAAATGACTTGGAGAAGGTAACAA
AGATGACCTATGCCCAAGTTGCCGTGTATGGTTTAGCGAAAAGGTTGGTC
TCTTGTCTTTCCCACAAAGAGAAGACACATTCGAAATGAGTAAGCCATAC
AGTAGCAAGACTGGGGCAATCATAGATGCCGAGGTTCGAGAATGGGTAGG
CAAGGCATATGTACGCACAGTCCAACTTATTGAGGAACACAAAGAGCATG
TAGCTCAGATTGCCGAGTTATTGCTTGAAAAGGAAGTTCTTCACCAAGAT
GATCTGCTTCGAGTTCTGGGTGAACGGCCATTCAAATCCAGTGAGCTCAC
AAATTATGACAGATTCAAGCAAGGTTTCGAAGAGGAAGAGAAGAGCTCAG
CGCCCCCAGAGACTGGAACCGTGGATGATGGTTCTTCACCACTCGAGCCT
CAGGTTGCTCCGGCATGAGAAACCATGTAGGTTAAATGTTTGTAATTCAT
ACTTGAGATGATTTTTTCTTTTTTTTTCCCCGCCCGTTGGAATTAGGGTA
CTCTGTAATTTGTAATCATATTCATAGTGTTCAATTTTTATTTAATTTTA
TCCCTAAGATCTTTCTGACAAAAAAAAAACCT
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