CX069780

Overview
NameCX069780
Unique NameCX069780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB21B_ARATH (ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.885e-17
Identity = 56/162 (34.57%), Postives = 83/162 (51.23%), Query Frame = -2
Query:    2 IKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMKMSEKVVKAQSKSSGLASEAVGNHSIITAF 484
            +KS TR +            +    Q  +F I G +L  R+R   F K++  EV WFD+ E+S GAI ARL+ DA  V+ LV D L+   QN++S    +V+  V SW LA + + M PLI    Y   I MK          ++S +A++AVG+   + +F
Sbjct:  765 LKSDTRFWAIIFMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDETENSSGAIGARLSADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLPLIGLNGY---IYMKFMVGFSADAKEASQVANDAVGSIRTVASF 923          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB7B_ARATH (ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16
Identity = 46/138 (33.33%), Postives = 80/138 (57.97%), Query Frame = -2
Query:    2 QHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQP-LIIRVFYTKAIMMKMSEKVVKAQSKSSGLASEAVGNHSIITAF 409
            Q+Y F I G +L  R+R   F ++L  ++ WFD  ++S G I ARL+TDA+ VK++V D L L+ QN+++ I A ++    +W LAL+A+ + P +  + +Y    +     K      ++S +AS+AV +   + +F
Sbjct:  743 QNYLFAIAGAKLIKRIRSLSFDRVLHQDISWFDDTKNSSGVIGARLSTDASTVKSIVGDVLGLIMQNMATIIGAFIIAFTANWLLALMALLVAPVMFFQGYYQIKFITGFGAKARGKYEEASQVASDAVSSIRTVASF 880          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: MDR49_DROME (Multidrug resistance protein homolog 49 OS=Drosophila melanogaster GN=Mdr49 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.651e-15
Identity = 44/134 (32.84%), Postives = 79/134 (58.96%), Query Frame = -2
Query:   23 NVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQE-DSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLI-IRVFYTKAIMMKMSEKVVKAQSKSSGLASEAVGN 418
            N+ Q Y F   G ++TTR+RK  FG I+  ++ +FD E +S GA+C+RLA+D + V+      +  + Q V++ ++ +V+G V SW   L+ +   PL+ + V+     +MK ++K   +  ++S +A EA+ N
Sbjct:  793 NMLQTYMFTTAGVKMTTRLRKRAFGTIIGQDIAYFDDERNSVGALCSRLASDCSNVQGATGARVGTMLQAVATLVVGMVVGFVFSWQQTLLTLVTLPLVCLSVYLEGRFIMKSAQKAKASIEEASQVAVEAITN 926          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: MDR1_MOUSE (Multidrug resistance protein 1 OS=Mus musculus GN=Abcb1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.147e-14
Identity = 52/167 (31.14%), Postives = 86/167 (51.50%), Query Frame = -2
Query:    5 DDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMKMSEKVVKAQSKSSG-LASEAVGNHSIITA 499
            DDH   +    ++           F+T  FQ + FG  G  LT RVR  +F  +L  ++ WFD  ++S G++  RLA+DA+ VK  +   L+++ QNV++    V+L LV  W L L+ + + PLI+     +  ++       K Q + SG +A+EA+ N   I +
Sbjct:  741 DDHETKRQNCNLFSLFFLVMGLISFVTYFFQGFTFGKAGEILTKRVRYMVFKSMLRQDISWFDDHKNSTGSLTTRLASDASSVKGAMGARLAVVTQNVANLGTGVILSLVYGWQLTLLLVVIIPLIVLGGIIEMKLLSGQALKDKKQLEISGKIATEAIENFRTIVS 907          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: ABCB2_DICDI (ABC transporter B family member 2 OS=Dictyostelium discoideum GN=abcB2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.101e-13
Identity = 51/176 (28.98%), Postives = 87/176 (49.43%), Query Frame = -2
Query:    2 LSVYFTDDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFD-QEDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIM---MKMSEKVVKAQSKSSGLASEAVGNHSIITAF 517
            L ++   D  ++  ++R              + N  Q Y F  +G +LT  +R+  F  I+  ++ WFD  E+S G + A LAT+AT V+ + +  L LL QN+ + +  +V+  V  W L LV +   P+I   F  K  M      S+K  +A ++   +ASEA+G    +++F
Sbjct:  826 LGIFQEQDTDELTRRSRNMALWFILLAVVAALANFIQIYCFTFIGEKLTFNLRRLSFESIMRQDIGWFDLTENSTGRLTANLATEATLVQGMTSQRLGLLIQNIVTIVAGLVIAFVSGWKLTLVVLACVPVI--GFAGKVEMDFFQGFSQKGKEAYAECGQVASEAIGGIRTVSSF 999          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: MDR2_CRIGR (Multidrug resistance protein 2 OS=Cricetulus griseus GN=PGY2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.050e-13
Identity = 51/174 (29.31%), Postives = 85/174 (48.85%), Query Frame = -2
Query:    5 LSVYFTDDHRDIKSQT-RIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQE-DSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLII-RVFYTKAIMMKMSEKVVKAQSKSSGLASEAVGNHSIITA 517
            + V+  DD    K Q   ++           F+T  FQ + FG  G  LT R+R  +F  +L  ++ WFD   +S GA+  RLA+DA  VK  ++  L+ + QNV++    +++ LV  W L L+ + + PLII        ++   + K  K    S  +A+EA+ N   + +
Sbjct:  734 IGVFTRDDDPKTKQQNCNLFSLFFLVMGMICFVTYFFQGFTFGKAGEILTKRLRYMVFKSMLRQDISWFDDHRNSTGALTTRLASDAANVKGAMSSRLAGITQNVANLGTGIIISLVYGWQLTLLLVVIAPLIILSGMMEMKVLSGQALKDKKELEVSGKIATEAIENFRTVVS 907          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: ABCB3_DICDI (ABC transporter B family member 3 OS=Dictyostelium discoideum GN=abcB3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.021e-13
Identity = 45/148 (30.41%), Postives = 77/148 (52.03%), Query Frame = -2
Query:    2 ITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFD-QEDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMKMSEKVVKAQSKSSG------LASEAVGNHSIITAF 424
            I+N FQ + F ++G +LT R+R+  F  I+  +V WFD  E+S G + + LATDA  V+ + +  L ++ QN+ + +  +V+     W L LV I   PL++       I  K+  +++   S   G      +ASEA+     + +F
Sbjct:  893 ISNFFQGFLFSVIGEKLTYRLRRDCFAAIMRQDVGWFDLPENSTGKLTSHLATDAALVQGMTSQRLGIVLQNILTMVGGLVIAFYSGWQLTLVIIACFPLVV-------ITSKVQMQILAGFSSKDGCGPAGQVASEAISGIRTVASF 1033          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: ABCBB_RABIT (Bile salt export pump OS=Oryctolagus cuniculus GN=ABCB11 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.571e-12
Identity = 40/138 (28.99%), Postives = 70/138 (50.72%), Query Frame = -2
Query:   23 TNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMKM----SEKVVKAQSKSSGLASEAVGN 421
            T   Q Y F   G  LT R+RK  F  +L  ++ WFD   +S GA+  RLATDA++V+      + ++  + ++  +A+++  + SW L L  +   P +     + A+  KM    + +  +A  K+  + SEA+ N
Sbjct:  812 TQFLQGYTFAKSGELLTKRLRKFGFRAMLGQDIGWFDDLRNSPGALTTRLATDASQVQGATGSQIGMMVNSFTNVTVAMIIAFLFSWKLTLGIVCFFPFLA---LSGALQTKMLTGFASRDKQALEKAGQITSEALSN 946          

HSP 2 Score: 30.4166 bits (67), Expect = 1.571e-12
Identity = 15/44 (34.09%), Postives = 20/44 (45.45%), Query Frame = -1
Query:  486 APRWKPALLGCVGGLCDGSIQPPCCFCLGGILSLICLFHRRSQR 617
            AP W   LLG +G   +G++ P   F    IL    L  +  QR
Sbjct:  749 APEWPYMLLGSMGAAVNGAVTPLYAFLFSQILGTFSLPDKEEQR 792          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: MDR1_RAT (Multidrug resistance protein 1 OS=Rattus norvegicus GN=Abcb1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12
Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = -2
Query:    5 DDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVL--SWTLALVAIYMQPLIIRVFYTKAIMMKMSEKVVKAQSKSSG-LASEAVGNHSIITA 499
            DDH   +    ++           F+T  FQ + FG  G  LT R+R  +F  +L  ++ WFD  +++ G++  RLA+DA+ VK  +   L+++ QNV++    ++L LVL   W L L+ + + PLI+     +  ++       K + + SG +A+EA+ N   + +
Sbjct:  741 DDHETKQRNCNLFSLLFLVMGMISFVTYFFQGFTFGKAGEILTKRLRYMVFKSMLRQDISWFDDHKNTTGSLTTRLASDASNVKGAMGSRLAVVTQNVANLGTGIILSLVLVYGWQLTLLLVVIIPLIVLGGIIEMKLLSGQALKDKKELEISGKIATEAIENFRTVVS 909          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: MDR2_RAT (Multidrug resistance protein 2 OS=Rattus norvegicus GN=Abcb4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12
Identity = 43/135 (31.85%), Postives = 74/135 (54.81%), Query Frame = -2
Query:   23 TNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMKMSEKVVKAQSKSSG-LASEAVGN 421
            T   Q + FG  G  LTTR+R   F  +L  ++ WFD  ++S GA+  RLATDA +V+      L+L+AQN ++    +++  +  W L L+ + + P I      +  M+  + K  K + +++G +A+EA+ N
Sbjct:  767 TFFLQGFTFGKAGEILTTRLRSMAFKAMLRQDMSWFDDHKNSTGALSTRLATDAAQVQGATGTRLALIAQNTANLGTGIIISFIYGWQLTLLLLSVVPFIAVAGIVEMKMLAGNAKRDKKEMEAAGKIATEAIEN 901          
The following BLAST results are available for this feature:
BLAST of CX069780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
AB21B_ARATH7.885e-1734.57ABC transporter B family member 21 OS=Arabidopsis ... [more]
AB7B_ARATH2.996e-1633.33ABC transporter B family member 7 OS=Arabidopsis t... [more]
MDR49_DROME5.651e-1532.84Multidrug resistance protein homolog 49 OS=Drosoph... [more]
MDR1_MOUSE2.147e-1431.14Multidrug resistance protein 1 OS=Mus musculus GN=... [more]
ABCB2_DICDI3.101e-1328.98ABC transporter B family member 2 OS=Dictyostelium... [more]
MDR2_CRIGR4.050e-1329.31Multidrug resistance protein 2 OS=Cricetulus grise... [more]
ABCB3_DICDI9.021e-1330.41ABC transporter B family member 3 OS=Dictyostelium... [more]
ABCBB_RABIT1.571e-1228.99Bile salt export pump OS=Oryctolagus cuniculus GN=... [more]
MDR1_RAT2.625e-1228.40Multidrug resistance protein 1 OS=Rattus norvegicu... [more]
MDR2_RAT5.848e-1231.85Multidrug resistance protein 2 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12G03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G03-N6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069780 ID=CX069780; Name=CX069780; organism=Citrus sinensis; type=EST; length=821bp
CAAATGCTGTAATGATGCTGTGGTTGCCAACAGCCTCACTTGCTAATCCA
CTGCTCTTGCTCTGTGCTTTCACTACTTTCTCAGACATCTTCATCATTAT
TGCTTTAGTATAGAACACCCTAATAATCAATGGCTGCATATAAATGGCTA
CGAGTGCAAGTGTCCATGATAAAACCAGCCCCAAAACAACAGCTAAAATT
GCCGATGAGACATTCTGAGCTAACAGTGACAGGTAATCAGCTACAAGAGT
CTTAACCCTTGTCGCATCTGTAGCCAACCTTGCACATATAGCTCCACCAC
TGTCCTCTTGATCAAACCATTCAACCTCAAATGTTAAGATCTTGCCAAAG
AGTGTCTTTCTGACCCTTGTCGTCAGCCTCCCTCCCATTATTCCAAAGTA
ATAATGCTGAAACACATTCGTGATGAAAACAGAGACAGCAAAAGATAAAA
ATGCAAAGCTGTAGATTCTGGTTTGTGATTTAATATCTCTGTGATCGTCT
GTGAAATAGACAGATAAGTGATAAGATTCCCCCCAAGCAGAAACAACACG
GAGGCTGAATCGATCCATCGCATAGACCACCAACGCAGCCTAGTAGTGCC
GGCTTCCACCTGGGGGCCATCATTACCCATAAGGTGCCTGACTGATGGGG
AAACATTGTGATCTTCTTGCAACTTATCGGTTTTCCCGTCATGACTGGAA
CTTCGCATACCTAAGCTTTTCAGAATGTGAATCCAGTGCACTTGTGGCTT
CATCATGCAGCCGGAGTTTGGGGCCCCTTTACAATGCCCTTGAAATGGAA
GTCCTTTGTTTCTGCTCCTCT
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