CX069780
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB21B_ARATH (ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.885e-17 Identity = 56/162 (34.57%), Postives = 83/162 (51.23%), Query Frame = -2 Query: 2 IKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMKMSEKVVKAQSKSSGLASEAVGNHSIITAF 484 +KS TR + + Q +F I G +L R+R F K++ EV WFD+ E+S GAI ARL+ DA V+ LV D L+ QN++S +V+ V SW LA + + M PLI Y I MK ++S +A++AVG+ + +F Sbjct: 765 LKSDTRFWAIIFMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDETENSSGAIGARLSADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLPLIGLNGY---IYMKFMVGFSADAKEASQVANDAVGSIRTVASF 923
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB7B_ARATH (ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16 Identity = 46/138 (33.33%), Postives = 80/138 (57.97%), Query Frame = -2 Query: 2 QHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQP-LIIRVFYTKAIMMKMSEKVVKAQSKSSGLASEAVGNHSIITAF 409 Q+Y F I G +L R+R F ++L ++ WFD ++S G I ARL+TDA+ VK++V D L L+ QN+++ I A ++ +W LAL+A+ + P + + +Y + K ++S +AS+AV + + +F Sbjct: 743 QNYLFAIAGAKLIKRIRSLSFDRVLHQDISWFDDTKNSSGVIGARLSTDASTVKSIVGDVLGLIMQNMATIIGAFIIAFTANWLLALMALLVAPVMFFQGYYQIKFITGFGAKARGKYEEASQVASDAVSSIRTVASF 880
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: MDR49_DROME (Multidrug resistance protein homolog 49 OS=Drosophila melanogaster GN=Mdr49 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.651e-15 Identity = 44/134 (32.84%), Postives = 79/134 (58.96%), Query Frame = -2 Query: 23 NVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQE-DSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLI-IRVFYTKAIMMKMSEKVVKAQSKSSGLASEAVGN 418 N+ Q Y F G ++TTR+RK FG I+ ++ +FD E +S GA+C+RLA+D + V+ + + Q V++ ++ +V+G V SW L+ + PL+ + V+ +MK ++K + ++S +A EA+ N Sbjct: 793 NMLQTYMFTTAGVKMTTRLRKRAFGTIIGQDIAYFDDERNSVGALCSRLASDCSNVQGATGARVGTMLQAVATLVVGMVVGFVFSWQQTLLTLVTLPLVCLSVYLEGRFIMKSAQKAKASIEEASQVAVEAITN 926
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: MDR1_MOUSE (Multidrug resistance protein 1 OS=Mus musculus GN=Abcb1 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.147e-14 Identity = 52/167 (31.14%), Postives = 86/167 (51.50%), Query Frame = -2 Query: 5 DDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMKMSEKVVKAQSKSSG-LASEAVGNHSIITA 499 DDH + ++ F+T FQ + FG G LT RVR +F +L ++ WFD ++S G++ RLA+DA+ VK + L+++ QNV++ V+L LV W L L+ + + PLI+ + ++ K Q + SG +A+EA+ N I + Sbjct: 741 DDHETKRQNCNLFSLFFLVMGLISFVTYFFQGFTFGKAGEILTKRVRYMVFKSMLRQDISWFDDHKNSTGSLTTRLASDASSVKGAMGARLAVVTQNVANLGTGVILSLVYGWQLTLLLVVIIPLIVLGGIIEMKLLSGQALKDKKQLEISGKIATEAIENFRTIVS 907
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: ABCB2_DICDI (ABC transporter B family member 2 OS=Dictyostelium discoideum GN=abcB2 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.101e-13 Identity = 51/176 (28.98%), Postives = 87/176 (49.43%), Query Frame = -2 Query: 2 LSVYFTDDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFD-QEDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIM---MKMSEKVVKAQSKSSGLASEAVGNHSIITAF 517 L ++ D ++ ++R + N Q Y F +G +LT +R+ F I+ ++ WFD E+S G + A LAT+AT V+ + + L LL QN+ + + +V+ V W L LV + P+I F K M S+K +A ++ +ASEA+G +++F Sbjct: 826 LGIFQEQDTDELTRRSRNMALWFILLAVVAALANFIQIYCFTFIGEKLTFNLRRLSFESIMRQDIGWFDLTENSTGRLTANLATEATLVQGMTSQRLGLLIQNIVTIVAGLVIAFVSGWKLTLVVLACVPVI--GFAGKVEMDFFQGFSQKGKEAYAECGQVASEAIGGIRTVSSF 999
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: MDR2_CRIGR (Multidrug resistance protein 2 OS=Cricetulus griseus GN=PGY2 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 4.050e-13 Identity = 51/174 (29.31%), Postives = 85/174 (48.85%), Query Frame = -2 Query: 5 LSVYFTDDHRDIKSQT-RIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQE-DSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLII-RVFYTKAIMMKMSEKVVKAQSKSSGLASEAVGNHSIITA 517 + V+ DD K Q ++ F+T FQ + FG G LT R+R +F +L ++ WFD +S GA+ RLA+DA VK ++ L+ + QNV++ +++ LV W L L+ + + PLII ++ + K K S +A+EA+ N + + Sbjct: 734 IGVFTRDDDPKTKQQNCNLFSLFFLVMGMICFVTYFFQGFTFGKAGEILTKRLRYMVFKSMLRQDISWFDDHRNSTGALTTRLASDAANVKGAMSSRLAGITQNVANLGTGIIISLVYGWQLTLLLVVIAPLIILSGMMEMKVLSGQALKDKKELEVSGKIATEAIENFRTVVS 907
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: ABCB3_DICDI (ABC transporter B family member 3 OS=Dictyostelium discoideum GN=abcB3 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.021e-13 Identity = 45/148 (30.41%), Postives = 77/148 (52.03%), Query Frame = -2 Query: 2 ITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFD-QEDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMKMSEKVVKAQSKSSG------LASEAVGNHSIITAF 424 I+N FQ + F ++G +LT R+R+ F I+ +V WFD E+S G + + LATDA V+ + + L ++ QN+ + + +V+ W L LV I PL++ I K+ +++ S G +ASEA+ + +F Sbjct: 893 ISNFFQGFLFSVIGEKLTYRLRRDCFAAIMRQDVGWFDLPENSTGKLTSHLATDAALVQGMTSQRLGIVLQNILTMVGGLVIAFYSGWQLTLVIIACFPLVV-------ITSKVQMQILAGFSSKDGCGPAGQVASEAISGIRTVASF 1033
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: ABCBB_RABIT (Bile salt export pump OS=Oryctolagus cuniculus GN=ABCB11 PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.571e-12 Identity = 40/138 (28.99%), Postives = 70/138 (50.72%), Query Frame = -2 Query: 23 TNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMKM----SEKVVKAQSKSSGLASEAVGN 421 T Q Y F G LT R+RK F +L ++ WFD +S GA+ RLATDA++V+ + ++ + ++ +A+++ + SW L L + P + + A+ KM + + +A K+ + SEA+ N Sbjct: 812 TQFLQGYTFAKSGELLTKRLRKFGFRAMLGQDIGWFDDLRNSPGALTTRLATDASQVQGATGSQIGMMVNSFTNVTVAMIIAFLFSWKLTLGIVCFFPFLA---LSGALQTKMLTGFASRDKQALEKAGQITSEALSN 946 HSP 2 Score: 30.4166 bits (67), Expect = 1.571e-12 Identity = 15/44 (34.09%), Postives = 20/44 (45.45%), Query Frame = -1 Query: 486 APRWKPALLGCVGGLCDGSIQPPCCFCLGGILSLICLFHRRSQR 617 AP W LLG +G +G++ P F IL L + QR Sbjct: 749 APEWPYMLLGSMGAAVNGAVTPLYAFLFSQILGTFSLPDKEEQR 792
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: MDR1_RAT (Multidrug resistance protein 1 OS=Rattus norvegicus GN=Abcb1 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12 Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = -2 Query: 5 DDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVL--SWTLALVAIYMQPLIIRVFYTKAIMMKMSEKVVKAQSKSSG-LASEAVGNHSIITA 499 DDH + ++ F+T FQ + FG G LT R+R +F +L ++ WFD +++ G++ RLA+DA+ VK + L+++ QNV++ ++L LVL W L L+ + + PLI+ + ++ K + + SG +A+EA+ N + + Sbjct: 741 DDHETKQRNCNLFSLLFLVMGMISFVTYFFQGFTFGKAGEILTKRLRYMVFKSMLRQDISWFDDHKNTTGSLTTRLASDASNVKGAMGSRLAVVTQNVANLGTGIILSLVLVYGWQLTLLLVVIIPLIVLGGIIEMKLLSGQALKDKKELEISGKIATEAIENFRTVVS 909
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: MDR2_RAT (Multidrug resistance protein 2 OS=Rattus norvegicus GN=Abcb4 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12 Identity = 43/135 (31.85%), Postives = 74/135 (54.81%), Query Frame = -2 Query: 23 TNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMKMSEKVVKAQSKSSG-LASEAVGN 421 T Q + FG G LTTR+R F +L ++ WFD ++S GA+ RLATDA +V+ L+L+AQN ++ +++ + W L L+ + + P I + M+ + K K + +++G +A+EA+ N Sbjct: 767 TFFLQGFTFGKAGEILTTRLRSMAFKAMLRQDMSWFDDHKNSTGALSTRLATDAAQVQGATGTRLALIAQNTANLGTGIIISFIYGWQLTLLLLSVVPFIAVAGIVEMKMLAGNAKRDKKEMEAAGKIATEAIEN 901 The following BLAST results are available for this feature:
BLAST of CX069780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069780 ID=CX069780; Name=CX069780; organism=Citrus sinensis; type=EST; length=821bpback to top |