CX069770

Overview
NameCX069770
Unique NameCX069770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069770 vs. ExPASy Swiss-Prot
Match: Y3804_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.791e-11
Identity = 32/107 (29.91%), Postives = 61/107 (57.01%), Query Frame = -2
Query:  502 LQYLELGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKSE 816
            L+ L+L  N  SG +P  +G    L+ +DLS N FSG LP++   L  + + +++ N L+  FP  + ++ G+  LD S N+    ++PS +++   +  L L++++
Sbjct:  249 LKELQLQRNQFSGALPSDIGLCPHLNRVDLSSNHFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIGDMTGLVHLDFSSNEL-TGKLPSSISNLRSLKDLNLSENK 354          

HSP 2 Score: 36.965 bits (84), Expect = 2.791e-11
Identity = 26/85 (30.59%), Postives = 43/85 (50.59%), Query Frame = -1
Query:  206 IDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMDSLRIVKTLKVLDLSRNLVFGKLPKAIS----GLDKLNVSFNNLCGEIP 448
            ++LSEN++SG   E L     L+  +  G+    N+        L+ +D S N + G +P+  S     L +L++S N+L G IP
Sbjct:  348 LNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIPDGFFDLGLQEMDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIP 432          
BLAST of CX069770 vs. ExPASy Swiss-Prot
Match: Y4361_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 3.612e-11
Identity = 32/106 (30.19%), Postives = 57/106 (53.77%), Query Frame = -2
Query:  505 LQYLELGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQFHLQQIPSWVTSSPIIFSLKLAKS 816
            +Q + L  N  SG VP+      SL  ++LS N FSG +P++F  L  + +L+L+ N ++   P  + N   +E L+L  N+  +  IP+ ++  P +  L L ++
Sbjct:  526 VQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRL-MGHIPADLSRLPRLKVLDLGQN 630          

HSP 2 Score: 42.3578 bits (98), Expect = 3.612e-11
Identity = 36/110 (32.73%), Postives = 53/110 (48.18%), Query Frame = -1
Query:  146 IDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNMD-SLRIVKTLKVLDLSRNLVFGKLPKAI----SGLDKLNVSFNNLCGEIPKTKFP----ASAFVGNECLCGPPL 448
            +DL +N +SG     ++++  L       + L   +  S   +  L  +DLS N + G++P ++    S L   NVS NNL GEIP +        S F GN  LCG PL
Sbjct:  625 LDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPL 734          
BLAST of CX069770 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 4.689e-11
Identity = 25/84 (29.76%), Postives = 43/84 (51.19%), Query Frame = -2
Query:  571 LQYLELGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFP--VMNVKGIESLDLSYNQFH 816
            L +L+   N   G +P  LG   +L +++LS N+F+G +P    NL  +  +NL+ N L    P  + N   +E  D+ +N  +
Sbjct:  508 LSFLDFNSNNFEGPIPGSLGSCKNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSLERFDVGFNSLN 591          

HSP 2 Score: 38.891 bits (89), Expect = 4.689e-11
Identity = 38/125 (30.40%), Postives = 56/125 (44.80%), Query Frame = -1
Query:  152 IKMNLNNWKPAQTYFYDYIDLSENEISGGPVELLNRTDYLVEFRASGSKLKFNM-DSLRIVKTLKV-LDLSRNLVFGKLPKAISGLDKL---NVSFNNLCGEIPKTKFPASAF---VGNECLCGP 502
            +  N +NWK   T     + LSEN  SGG  + L     L   + + +     +  S+ +++ L   LDLS N + G++P  +  L KL   N+S NNL G +   K   S     V N    GP
Sbjct:  594 VPSNFSNWKGLTT-----LVLSENRFSGGIPQFLPELKKLSTLQIARNAFGGEIPSSIGLIEDLIYDLDLSGNGLTGEIPAKLGDLIKLTRLNISNNNLTGSLSVLKGLTSLLHVDVSNNQFTGP 713          
BLAST of CX069770 vs. ExPASy Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.919e-11
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = -2
Query:  577 LQYLELGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKG-IESLDLSYNQ 816
            LQ+L + H  +SG +PD L +  SLD++DLS N  +G +P SFS+L  + +L+L  N LT   P   V+G   SL LSYNQ
Sbjct:  122 LQFLTISHTNVSGVIPDSLARIRSLDSVDLSHNSLTGPIPNSFSDLPNLRSLDLRSNKLTGCIPAGLVQGQFRSLILSYNQ 202          
BLAST of CX069770 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = -2
Query:  574 LQYLELGHNVLSGKVPDFLGKFHSLDTLDLSWNQFSGTLPKSFSNLTKIFNLNLAYNSLTDPFPVMNVKGIESLDLSYNQF 816
            LQ + LG N L+G++PD   K   L+TLD S N+ SG LP+SF+NLT +  L+L  N  T    V+    I+ L++  NQF
Sbjct:  140 LQSINLGQNKLNGELPDMFQKLSKLETLDFSLNKLSGKLPQSFANLTSLKKLHLQDNRFTGDINVLRNLAIDDLNVEDNQF 220          
The following BLAST results are available for this feature:
BLAST of CX069770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
Y3804_ARATH2.791e-1129.91Probably inactive leucine-rich repeat receptor-lik... [more]
Y4361_ARATH3.612e-1130.19Probable LRR receptor-like serine/threonine-protei... [more]
PEPR1_ARATH4.689e-1129.76Leucine-rich repeat receptor-like protein kinase P... [more]
PGIP1_ORYSJ4.919e-1145.68Polygalacturonase inhibitor 1 OS=Oryza sativa subs... [more]
SRF5_ARATH6.424e-1143.21Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12F10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F10-L20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069770 ID=CX069770; Name=CX069770; organism=Citrus sinensis; type=EST; length=817bp
CAGTGGTTATTCTCTCCAAATGACAATAGTCAAAGCAATAACATAAACGT
TGAGGGACCCCTGCAGCTAATTTCCTTCATACACTCACTGCTCAATGATG
ATGAGTCGCTTACTTCCCACAAACGCACTTGCATGACGATGATGGCAATG
GAGGACCACAGAGACACTCGTTGCCCACAAAAGCACTGGCCGGAAATTTC
GTTTTTGGAATCTCACCACACAAATTATTAAAGCTCACGTTCAATTTATC
AAGTCCTGATATTGCCTTTGGCAGTTTCCCGAAAACCAAATTTCTCGACA
AATCCAAGACCTTCAATGTCTTCACAATCCTCAAACTGTCCATGTTGAAC
TTCAACTTGCTGCCTGAGGCCCGAAACTCCACCAAGTAATCTGTCCGGTT
CAGCAACTCAACCGGACCCCCCGATATTTCGTTTTCGGACAGATCAATGT
AGTCGTAAAAGTAAGTCTGAGCCGGCTTCCAGTTGTTCAGGTTCATTTTG
ATTCCGATTTGGCCAGCTTGAGAGAAAAAATAATCGGAGATGAAGTGACC
CAACTGGGAATTTGTTGGAGATGAAATTGGTTGTATGACAAGTCAAGCGA
CTCAATTCCTTTAACGTTCATTACAGGAAATGGGTCTGTGAGAGAATTGT
AAGCGAGATTGAGATTGAAAATCTTGGTGAGATTGCTGAAACTCTTTGGC
AAAGTTCCTGAAAACTGATTCCAGGAAAGATCCAGCGTGTCTAGAGAATG
GAATTTTCCGAGAAAATCTGGGACCTTTCCGGACAGGACATTGTGGCCTA
GCTCCAGATATTGCAGC
back to top