CX069768
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHESH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella sediminis (strain HAW-EB3) GN=rumA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.510e-19 Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = -2 Query: 219 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 671 VLDLFCG G L LA+ V G E VP+ + A NA + + N +F DL+ D K D ++ DP R G + +++L K+K IVYVSC+P++ ARD + L +K YKLK L +DMFP T HIE + L EL Sbjct: 301 VLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVKQARENAADSGLDNVSFFHTDLS---ADLSKETWLGKVDKLLLDPARAGA-FESLQWLKKMKPKAIVYVSCDPSSLARDSEPL--------LKHGYKLKKLGLIDMFPQTHHIEAMALFEL 441
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y257_AQUAE (Uncharacterized RNA methyltransferase aq_257 OS=Aquifex aeolicus GN=aq_257 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18 Identity = 60/151 (39.74%), Postives = 79/151 (52.32%), Query Frame = -2 Query: 219 LDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK-IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 668 LDL CG G + L+ + G + P AI DA NAK+NN N F + K + G ++V+ DP R G+ + LLK K +IVY+SCNP T ARDL L KG Y+LK L+ +D FP T HIE + LLE+ Sbjct: 284 LDLHCGVGFFTIPLSEQGNFIEGADANPSAIKDAEYNAKINNRDNVIFEEATAFKHLKRRIGEVI---NLVVVDPPRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKIL--------TKGGYELKRLKLIDNFPQTYHIESIALLEV 423
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PSEE4 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas entomophila (strain L48) GN=rumA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18 Identity = 61/150 (40.67%), Postives = 79/150 (52.67%), Query Frame = -2 Query: 222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671 VLDLFCG G L LAR + V E V + A NA NN+ NA F Q DL++ V+ DP R G + ++++ + +L A R+VYVSCNPAT ARD L G G Y+LK +DMFP T H+E + L E Sbjct: 310 VLDLFCGLGNFALPLARQAREVVAVEGVQAMVERAEANAHGNNVYNARFFQADLSQPLAGAEWVAEGFSAVLLDPPRDGAY-EVVQGIARLGAKRLVYVSCNPATLARDTQVLV-GQG-------YRLKRAGILDMFPQTAHVEAMALFE 450
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_EDWI9 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Edwardsiella ictaluri (strain 93-146) GN=rumA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18 Identity = 59/150 (39.33%), Postives = 80/150 (53.33%), Query Frame = -2 Query: 222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671 VLDLFCG G L LAR V G E VP ++ A NA+ N +SN F +L + A D ++ DP R G +++ +++L R+VYVSCNP T ARD L ++G Y+L L +DMFPHT H+E + L E Sbjct: 294 VLDLFCGMGNFTLPLARLALRVVGVEGVPGLVATAQNNARNNGLSNVEFFHQNLEEDVTRQAWASQGFDKILLDPARAGA-PGVMQHIVRLAPRRVVYVSCNPTTLARDSQTL--------LQGGYRLTRLCMLDMFPHTGHLESMALFE 434
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y248_PARUW (Uncharacterized RNA methyltransferase pc0248 OS=Protochlamydia amoebophila (strain UWE25) GN=pc0248 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18 Identity = 61/177 (34.46%), Postives = 90/177 (50.85%), Query Frame = -2 Query: 222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752 Q + Q+ +YK I C+ SK +LDL+CG G L LA V G E AI A N+KLN++ + F++GD+ KI + D+VI +P R G+ +IK L+ ++Y+SC P+T ARDL LC + Y++ DMFP T H+E + L+ Sbjct: 266 QNHPEQSLYIYKKI--CSLTIQLKSKKILDLYCGFGITSLLLASQGHFVTGIEYNSDAIRFAKENSKLNHLPHVEFLEGDVEKILPICLKSQKCVDLVIVNPPRIGLSKSVIKILMSALPEDMIYISCMPSTLARDLSILCEDL--------YEIHECTAYDMFPQTSHVETLVHLK 432
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHEAM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rumA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18 Identity = 61/153 (39.87%), Postives = 83/153 (54.25%), Query Frame = -2 Query: 219 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 671 VLDLFCG G L LA+ V G E VP+ ++ A +NA +N + N +F DL++ D K D ++ DP R G + L K+L K+K +++YVSCNPA+ ARD L + Y+L L VDMFP T H E + L EL Sbjct: 301 VLDLFCGVGNFSLPLAKQGAEVVGVEGVPEMVAQAKQNAAINGLDNLSFYCADLSE---DLAAEPWLGKIDKLLLDPARAGAYESL-KWLKKMKPAKVLYVSCNPASLARDSVLL--------FEAGYQLTRLGLVDMFPQTHHSEGMALFEL 441
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y292_LEPIN (Uncharacterized RNA methyltransferase LA_0292 OS=Leptospira interrogans GN=LA_0292 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.119e-18 Identity = 65/175 (37.14%), Postives = 85/175 (48.57%), Query Frame = -2 Query: 234 QTNTHQAEVLYKLI-EDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF-PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 752 Q N Q E LY LI ED +K V+D +CG GTI L +A K V G E +I A +K N I N F++G K+ A D+V+ DP R G+ + LL K +I+YVSCNP T RD L +K + + PVD+FPHT H+E V Sbjct: 231 QVNPFQIENLYNLILEDLPE-----NKCVVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKG---KVLDTLRAALNENSDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLRDAIELTKS---------FKYEKITPVDLFPHTSHLESV 388
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y249_LEPIC (Uncharacterized RNA methyltransferase LIC_10249 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=LIC_10249 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.119e-18 Identity = 65/175 (37.14%), Postives = 85/175 (48.57%), Query Frame = -2 Query: 234 QTNTHQAEVLYKLI-EDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF-PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 752 Q N Q E LY LI ED +K V+D +CG GTI L +A K V G E +I A +K N I N F++G K+ A D+V+ DP R G+ + LL K +I+YVSCNP T RD L +K + + PVD+FPHT H+E V Sbjct: 231 QVNPFQIENLYNLILEDLPE-----NKCVVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKG---KVLDTLRAALNENSDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLRDAIELTKS---------FKYEKITPVDLFPHTSHLESV 388
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHISS (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shigella sonnei (strain Ss046) GN=rumA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.119e-18 Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = -2 Query: 228 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 671 VLDLFCG G L LA V G E VP + +NA+LN + N TF +L + A D V+ DP R G +++ ++KL+ RIVYVSCNPAT ARD + L +K Y + L +DMFPHT H+E + L Sbjct: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL--------LKAGYTIARLAMLDMFPHTGHLESMVL 428
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHIFL (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shigella flexneri GN=rumA PE=3 SV=3) HSP 1 Score: 92.8189 bits (229), Expect = 2.119e-18 Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = -2 Query: 228 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 671 VLDLFCG G L LA V G E VP + +NA+LN + N TF +L + A D V+ DP R G +++ ++KL+ RIVYVSCNPAT ARD + L +K Y + L +DMFPHT H+E + L Sbjct: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL--------LKAGYTIARLAMLDMFPHTGHLESMVL 428 The following BLAST results are available for this feature:
BLAST of CX069768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 373
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069768 ID=CX069768; Name=CX069768; organism=Citrus sinensis; type=EST; length=753bpback to top |