CX069768

Overview
NameCX069768
Unique NameCX069768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHESH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella sediminis (strain HAW-EB3) GN=rumA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.510e-19
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = -2
Query:  219 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 671
            VLDLFCG G   L LA+    V G E VP+ +  A  NA  + + N +F   DL+    D        K D ++ DP R G   + +++L K+K   IVYVSC+P++ ARD + L        +K  YKLK L  +DMFP T HIE + L EL
Sbjct:  301 VLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVKQARENAADSGLDNVSFFHTDLS---ADLSKETWLGKVDKLLLDPARAGA-FESLQWLKKMKPKAIVYVSCDPSSLARDSEPL--------LKHGYKLKKLGLIDMFPQTHHIEAMALFEL 441          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y257_AQUAE (Uncharacterized RNA methyltransferase aq_257 OS=Aquifex aeolicus GN=aq_257 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18
Identity = 60/151 (39.74%), Postives = 79/151 (52.32%), Query Frame = -2
Query:  219 LDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK-IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 668
            LDL CG G   + L+     + G +  P AI DA  NAK+NN  N  F +    K +    G      ++V+ DP R G+  +    LLK K  +IVY+SCNP T ARDL  L         KG Y+LK L+ +D FP T HIE + LLE+
Sbjct:  284 LDLHCGVGFFTIPLSEQGNFIEGADANPSAIKDAEYNAKINNRDNVIFEEATAFKHLKRRIGEVI---NLVVVDPPRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKIL--------TKGGYELKRLKLIDNFPQTYHIESIALLEV 423          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PSEE4 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas entomophila (strain L48) GN=rumA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18
Identity = 61/150 (40.67%), Postives = 79/150 (52.67%), Query Frame = -2
Query:  222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671
            VLDLFCG G   L LAR  + V   E V   +  A  NA  NN+ NA F Q DL++              V+ DP R G + ++++ + +L A R+VYVSCNPAT ARD   L  G G       Y+LK    +DMFP T H+E + L E
Sbjct:  310 VLDLFCGLGNFALPLARQAREVVAVEGVQAMVERAEANAHGNNVYNARFFQADLSQPLAGAEWVAEGFSAVLLDPPRDGAY-EVVQGIARLGAKRLVYVSCNPATLARDTQVLV-GQG-------YRLKRAGILDMFPQTAHVEAMALFE 450          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_EDWI9 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Edwardsiella ictaluri (strain 93-146) GN=rumA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18
Identity = 59/150 (39.33%), Postives = 80/150 (53.33%), Query Frame = -2
Query:  222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671
            VLDLFCG G   L LAR    V G E VP  ++ A  NA+ N +SN  F   +L +       A    D ++ DP R G    +++ +++L   R+VYVSCNP T ARD   L        ++G Y+L  L  +DMFPHT H+E + L E
Sbjct:  294 VLDLFCGMGNFTLPLARLALRVVGVEGVPGLVATAQNNARNNGLSNVEFFHQNLEEDVTRQAWASQGFDKILLDPARAGA-PGVMQHIVRLAPRRVVYVSCNPTTLARDSQTL--------LQGGYRLTRLCMLDMFPHTGHLESMALFE 434          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y248_PARUW (Uncharacterized RNA methyltransferase pc0248 OS=Protochlamydia amoebophila (strain UWE25) GN=pc0248 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18
Identity = 61/177 (34.46%), Postives = 90/177 (50.85%), Query Frame = -2
Query:  222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752
            Q +  Q+  +YK I  C+      SK +LDL+CG G   L LA     V G E    AI  A  N+KLN++ +  F++GD+ KI      +    D+VI +P R G+   +IK L+      ++Y+SC P+T ARDL  LC  +        Y++      DMFP T H+E +  L+
Sbjct:  266 QNHPEQSLYIYKKI--CSLTIQLKSKKILDLYCGFGITSLLLASQGHFVTGIEYNSDAIRFAKENSKLNHLPHVEFLEGDVEKILPICLKSQKCVDLVIVNPPRIGLSKSVIKILMSALPEDMIYISCMPSTLARDLSILCEDL--------YEIHECTAYDMFPQTSHVETLVHLK 432          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHEAM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rumA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18
Identity = 61/153 (39.87%), Postives = 83/153 (54.25%), Query Frame = -2
Query:  219 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 671
            VLDLFCG G   L LA+    V G E VP+ ++ A +NA +N + N +F   DL++   D        K D ++ DP R G +  L K+L K+K  +++YVSCNPA+ ARD   L         +  Y+L  L  VDMFP T H E + L EL
Sbjct:  301 VLDLFCGVGNFSLPLAKQGAEVVGVEGVPEMVAQAKQNAAINGLDNLSFYCADLSE---DLAAEPWLGKIDKLLLDPARAGAYESL-KWLKKMKPAKVLYVSCNPASLARDSVLL--------FEAGYQLTRLGLVDMFPQTHHSEGMALFEL 441          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y292_LEPIN (Uncharacterized RNA methyltransferase LA_0292 OS=Leptospira interrogans GN=LA_0292 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.119e-18
Identity = 65/175 (37.14%), Postives = 85/175 (48.57%), Query Frame = -2
Query:  234 QTNTHQAEVLYKLI-EDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF-PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 752
            Q N  Q E LY LI ED        +K V+D +CG GTI L +A   K V G E    +I  A   +K N I N  F++G   K+      A     D+V+ DP R G+  +    LL  K  +I+YVSCNP T  RD   L            +K + + PVD+FPHT H+E V
Sbjct:  231 QVNPFQIENLYNLILEDLPE-----NKCVVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKG---KVLDTLRAALNENSDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLRDAIELTKS---------FKYEKITPVDLFPHTSHLESV 388          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y249_LEPIC (Uncharacterized RNA methyltransferase LIC_10249 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=LIC_10249 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.119e-18
Identity = 65/175 (37.14%), Postives = 85/175 (48.57%), Query Frame = -2
Query:  234 QTNTHQAEVLYKLI-EDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF-PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 752
            Q N  Q E LY LI ED        +K V+D +CG GTI L +A   K V G E    +I  A   +K N I N  F++G   K+      A     D+V+ DP R G+  +    LL  K  +I+YVSCNP T  RD   L            +K + + PVD+FPHT H+E V
Sbjct:  231 QVNPFQIENLYNLILEDLPE-----NKCVVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKG---KVLDTLRAALNENSDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLRDAIELTKS---------FKYEKITPVDLFPHTSHLESV 388          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHISS (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shigella sonnei (strain Ss046) GN=rumA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.119e-18
Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = -2
Query:  228 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 671
            VLDLFCG G   L LA     V G E VP  +    +NA+LN + N TF   +L +       A    D V+ DP R G    +++ ++KL+  RIVYVSCNPAT ARD + L        +K  Y +  L  +DMFPHT H+E + L
Sbjct:  290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL--------LKAGYTIARLAMLDMFPHTGHLESMVL 428          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHIFL (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shigella flexneri GN=rumA PE=3 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.119e-18
Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = -2
Query:  228 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 671
            VLDLFCG G   L LA     V G E VP  +    +NA+LN + N TF   +L +       A    D V+ DP R G    +++ ++KL+  RIVYVSCNPAT ARD + L        +K  Y +  L  +DMFPHT H+E + L
Sbjct:  290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL--------LKAGYTIARLAMLDMFPHTGHLESMVL 428          
The following BLAST results are available for this feature:
BLAST of CX069768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
RUMA_SHESH9.510e-1939.8723S rRNA (uracil-5-)-methyltransferase rumA OS=She... [more]
Y257_AQUAE1.242e-1839.74Uncharacterized RNA methyltransferase aq_257 OS=Aq... [more]
RUMA_PSEE41.242e-1840.6723S rRNA (uracil-5-)-methyltransferase rumA OS=Pse... [more]
RUMA_EDWI91.242e-1839.3323S rRNA (uracil-5-)-methyltransferase rumA OS=Edw... [more]
Y248_PARUW1.622e-1834.46Uncharacterized RNA methyltransferase pc0248 OS=Pr... [more]
RUMA_SHEAM1.622e-1839.8723S rRNA (uracil-5-)-methyltransferase rumA OS=She... [more]
Y292_LEPIN2.119e-1837.14Uncharacterized RNA methyltransferase LA_0292 OS=L... [more]
Y249_LEPIC2.119e-1837.14Uncharacterized RNA methyltransferase LIC_10249 OS... [more]
RUMA_SHISS2.119e-1840.5423S rRNA (uracil-5-)-methyltransferase rumA OS=Shi... [more]
RUMA_SHIFL2.119e-1840.5423S rRNA (uracil-5-)-methyltransferase rumA OS=Shi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069768 ID=CX069768; Name=CX069768; organism=Citrus sinensis; type=EST; length=753bp
GCTAATTAGACCGAATCAATCGAATTTCCAATTTTCAAATACTGTGTTTT
CTGCATGAATGAAGCTACAATTCAAAGAAATATAATCATGTAGCTGGAAA
TCACCCATCCAGATGTACAAATTAAAGATTACTGTCAGTTGGACCAGGAA
TAGCTTGGGCCCCTGCCAACCTAGTAGGAGTGCAGCAGCTAGCTTGGAAT
TGCAGCTTAAGGTCAAGAAAGTTCAAGTAGGCATACACATTCGATATGAG
GAGTGTGAGGGAACATATCTACTGGTTGTAAACTTTTTAGTTTATAACAT
CCCTTTATGTTTTGATCTCCCACACCATGACAAAGGTAATCAAGGTCACG
TGCACACGTGGCCGGATTACACGATACATAAACAATGCGTGGTGCCTTCA
GCTTTAGTAGGAACTTGATCAATTTCATGTGCATACCAGGGCGGTTTGGA
TCTGAAATGACAATGTCTGGCTTTGGAAAAGCATTGCCAAAATCTCCACC
AATTTTGTTGAGATCCCCTTGAACAAAAGTAGCATTAGAAATATTGTTCA
ACTTTGCATTTCTACAAGCATCTGATATAGCTTGAGGAACTACTTCATAT
CCATAAACATGTTTAACCCATCTTGCAAGTGTTAAACCAATGGTACCGGT
TCCACAAAATAGGTCAAGCACAATCTTGGAGCCATCACCTCTGAGACCAG
CACAATCTTCAATGAGTTTATAAAGAACCTCTGCCTGGTGAGTATTTGTC
TGG
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