CX069768
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_LEGPH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rumA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.767e-18 Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = -2 Query: 222 SKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN---KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 680 S IVLDLFCG G L +A+ V G E + A NAK N+I+N F +L+ ++ +F K V+ DP R G ++++K + + RIVYVSCNP T ARD D L + G Y L + +DMFPHT H+E + L + Sbjct: 298 SDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEVRNLVNTSFSK---VLIDPPRSGA-LEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKG-------YVLITAGVMDMFPHTAHVESIALFQ 442
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_LEGPC (23S rRNA (uracil-5-)-methyltransferase rumA OS=Legionella pneumophila (strain Corby) GN=rumA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.767e-18 Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = -2 Query: 222 SKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN---KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 680 S IVLDLFCG G L +A+ V G E + A NAK N+I+N F +L+ ++ +F K V+ DP R G ++++K + + RIVYVSCNP T ARD D L + G Y L + +DMFPHT H+E + L + Sbjct: 298 SDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEVRNLVNTSFSK---VLIDPPRSGA-LEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKG-------YVLITAGVMDMFPHTAHVESIALFQ 442
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_LEGPA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Legionella pneumophila (strain Paris) GN=rumA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.767e-18 Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = -2 Query: 222 SKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN---KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 680 S IVLDLFCG G L +A+ V G E + A NAK N+I+N F +L+ ++ +F K V+ DP R G ++++K + + RIVYVSCNP T ARD D L + G Y L + +DMFPHT H+E + L + Sbjct: 298 SDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEVRSLVNTSFSK---VLIDPPRSGA-LEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKG-------YVLITAGVMDMFPHTAHVESIALFQ 442
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_HAHCH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Hahella chejuensis (strain KCTC 2396) GN=rumA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.614e-18 Identity = 64/162 (39.51%), Postives = 83/162 (51.23%), Query Frame = -2 Query: 222 LRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN---KIGGDFGNAFPKP-DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 695 L+ + +LDLFCG G L +AR HV G E + NA+LN ISN F DL+ + +A+ + D V+ DP R G +L K + + A RIVYVSCNPAT ARD L +G YKL +DMFPHT H+E + L E Sbjct: 292 LQPQAGETILDLFCGLGNFTLPIARSAAHVVGVEGSEDMVRRGYANAELNGISNVEFHAADLHLPLAPAKEAKHAWLRTYDKVLLDPPRSGAE-ELAKQMTRFGAKRIVYVSCNPATLARDAGILA-------TQG-YKLIKAGVMDMFPHTAHVESMALFE 444
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_ACIAD (23S rRNA (uracil-5-)-methyltransferase rumA OS=Acinetobacter sp. (strain ADP1) GN=rumA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.614e-18 Identity = 67/181 (37.02%), Postives = 87/181 (48.07%), Query Frame = -2 Query: 222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752 Q N + + KL C L+ + VLDLFCG G L LAR V V G E + + A NA N + N F DL K A D ++ DP R G +++ ++ +A RIVYVSCNPAT ARD L HG Y+LK + +DMF HT H+E + L E Sbjct: 288 QVNATVNQQMLKLA--CDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALHNVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGA-FEIMHYIANFEAKRIVYVSCNPATLARDAGVLAQHG---------YQLKKVGVMDMFTHTEHVESIALFE 456
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_ECO57 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Escherichia coli O157:H7 GN=rumA PE=3 SV=3) HSP 1 Score: 91.6633 bits (226), Expect = 4.720e-18 Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = -2 Query: 228 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 671 VLDLFCG G L LA V G E VP + +NA+LN + N TF +L + A D V+ DP R G +++ ++KL+ RIVYVSCNPAT ARD + L +K Y + L +DMFPHT H+E + L Sbjct: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNCLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL--------LKAGYTIARLAMLDMFPHTGHLESMVL 428
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PSEHT (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rumA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.164e-18 Identity = 66/179 (36.87%), Postives = 97/179 (54.19%), Query Frame = -2 Query: 222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL-NKIGGDFGNAFPKP-DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752 Q N + + K ++ L+GD + VLDLFCG G L LA+ K V G E V A++ A +NA N+I+NA F DL NKI + + F K D+++ DP+R G L + LK + I+YVSC+P T ARD + + ++L + ++MFPHT HIE + L + Sbjct: 274 QVNASVNQAMLKQAQNWLALKGDEN--VLDLFCGIGNFSLVLAKQAKTVIGVEGVASAVAMATQNAHTNSITNAQFNCFDLTNKI--ETASWFNKNLDVLVLDPSRTGAITVLEQLPLK-QFKTILYVSCDPVTLARDSAIIS--------QAGFELHKIGLMNMFPHTGHIETMALFQ 439
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_ALCBS (23S rRNA (uracil-5-)-methyltransferase rumA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rumA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.164e-18 Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = -2 Query: 222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671 VLDLFCG G + A+ V G EV + NA+ N++ N F DL++ A D ++ DP R G ++++K + +L A +IVYVSCNPAT ARD G+ G Y+LK+ +DMFPHT H+E + + E Sbjct: 300 VLDLFCGLGNFTIPAAKRAGKVVGVEVSQAMVERGYENARRNSLENLEFHAWDLSQDVSGQAWARQTYDRILIDPPRTGA-LEMVKLMPRLGASKIVYVSCNPATLARD-------AGELMALG-YRLKAAGVMDMFPHTTHVESIAVFE 440
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SALTY (23S rRNA (uracil-5-)-methyltransferase rumA OS=Salmonella typhimurium GN=rumA PE=3 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 8.051e-18 Identity = 60/150 (40.00%), Postives = 77/150 (51.33%), Query Frame = -2 Query: 222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671 VLDLFCG G L LA V G E VP + NA N + N TF +L + A D V+ DP R G +++ ++KLK RIVYVSCNPAT ARD + L + Y++ L +DMFPHT H+E + L E Sbjct: 289 VLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGA-TGVMRHIIKLKPIRIVYVSCNPATLARDSEAL--------VNAGYEVTRLAMLDMFPHTGHLESMVLFE 429
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SALPA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Salmonella paratyphi A GN=rumA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 8.051e-18 Identity = 60/150 (40.00%), Postives = 77/150 (51.33%), Query Frame = -2 Query: 222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671 VLDLFCG G L LA V G E VP + NA N + N TF +L + A D V+ DP R G +++ ++KLK RIVYVSCNPAT ARD + L + Y++ L +DMFPHT H+E + L E Sbjct: 289 VLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGA-TGVMRHIIKLKPIRIVYVSCNPATLARDSEAL--------VNAGYEVTRLAMLDMFPHTGHLESMVLFE 429 The following BLAST results are available for this feature:
BLAST of CX069768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 373
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069768 ID=CX069768; Name=CX069768; organism=Citrus sinensis; type=EST; length=753bpback to top |