CX069768

Overview
NameCX069768
Unique NameCX069768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_LEGPH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rumA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.767e-18
Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = -2
Query:  222 SKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN---KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 680
            S IVLDLFCG G   L +A+    V G E     +  A  NAK N+I+N  F   +L+   ++      +F K   V+ DP R G  ++++K +  +   RIVYVSCNP T ARD D L +  G       Y L +   +DMFPHT H+E + L +
Sbjct:  298 SDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEVRNLVNTSFSK---VLIDPPRSGA-LEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKG-------YVLITAGVMDMFPHTAHVESIALFQ 442          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_LEGPC (23S rRNA (uracil-5-)-methyltransferase rumA OS=Legionella pneumophila (strain Corby) GN=rumA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.767e-18
Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = -2
Query:  222 SKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN---KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 680
            S IVLDLFCG G   L +A+    V G E     +  A  NAK N+I+N  F   +L+   ++      +F K   V+ DP R G  ++++K +  +   RIVYVSCNP T ARD D L +  G       Y L +   +DMFPHT H+E + L +
Sbjct:  298 SDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEVRNLVNTSFSK---VLIDPPRSGA-LEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKG-------YVLITAGVMDMFPHTAHVESIALFQ 442          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_LEGPA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Legionella pneumophila (strain Paris) GN=rumA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.767e-18
Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = -2
Query:  222 SKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN---KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 680
            S IVLDLFCG G   L +A+    V G E     +  A  NAK N+I+N  F   +L+   ++      +F K   V+ DP R G  ++++K +  +   RIVYVSCNP T ARD D L +  G       Y L +   +DMFPHT H+E + L +
Sbjct:  298 SDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEVRSLVNTSFSK---VLIDPPRSGA-LEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKG-------YVLITAGVMDMFPHTAHVESIALFQ 442          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_HAHCH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Hahella chejuensis (strain KCTC 2396) GN=rumA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.614e-18
Identity = 64/162 (39.51%), Postives = 83/162 (51.23%), Query Frame = -2
Query:  222 LRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN---KIGGDFGNAFPKP-DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 695
            L+    + +LDLFCG G   L +AR   HV G E     +     NA+LN ISN  F   DL+       +  +A+ +  D V+ DP R G   +L K + +  A RIVYVSCNPAT ARD   L         +G YKL     +DMFPHT H+E + L E
Sbjct:  292 LQPQAGETILDLFCGLGNFTLPIARSAAHVVGVEGSEDMVRRGYANAELNGISNVEFHAADLHLPLAPAKEAKHAWLRTYDKVLLDPPRSGAE-ELAKQMTRFGAKRIVYVSCNPATLARDAGILA-------TQG-YKLIKAGVMDMFPHTAHVESMALFE 444          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_ACIAD (23S rRNA (uracil-5-)-methyltransferase rumA OS=Acinetobacter sp. (strain ADP1) GN=rumA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.614e-18
Identity = 67/181 (37.02%), Postives = 87/181 (48.07%), Query Frame = -2
Query:  222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752
            Q N    + + KL   C  L+    + VLDLFCG G   L LAR V     V G E   + +  A  NA  N + N  F   DL K       A    D ++ DP R G   +++ ++   +A RIVYVSCNPAT ARD   L  HG         Y+LK +  +DMF HT H+E + L E
Sbjct:  288 QVNATVNQQMLKLA--CDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALHNVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGA-FEIMHYIANFEAKRIVYVSCNPATLARDAGVLAQHG---------YQLKKVGVMDMFTHTEHVESIALFE 456          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_ECO57 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Escherichia coli O157:H7 GN=rumA PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.720e-18
Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = -2
Query:  228 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 671
            VLDLFCG G   L LA     V G E VP  +    +NA+LN + N TF   +L +       A    D V+ DP R G    +++ ++KL+  RIVYVSCNPAT ARD + L        +K  Y +  L  +DMFPHT H+E + L
Sbjct:  290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNCLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL--------LKAGYTIARLAMLDMFPHTGHLESMVL 428          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PSEHT (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rumA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.164e-18
Identity = 66/179 (36.87%), Postives = 97/179 (54.19%), Query Frame = -2
Query:  222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL-NKIGGDFGNAFPKP-DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752
            Q N    + + K  ++   L+GD +  VLDLFCG G   L LA+  K V G E V  A++ A +NA  N+I+NA F   DL NKI  +  + F K  D+++ DP+R G    L +  LK +   I+YVSC+P T ARD   +         +  ++L  +  ++MFPHT HIE + L +
Sbjct:  274 QVNASVNQAMLKQAQNWLALKGDEN--VLDLFCGIGNFSLVLAKQAKTVIGVEGVASAVAMATQNAHTNSITNAQFNCFDLTNKI--ETASWFNKNLDVLVLDPSRTGAITVLEQLPLK-QFKTILYVSCDPVTLARDSAIIS--------QAGFELHKIGLMNMFPHTGHIETMALFQ 439          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_ALCBS (23S rRNA (uracil-5-)-methyltransferase rumA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rumA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.164e-18
Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = -2
Query:  222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671
            VLDLFCG G   +  A+    V G EV    +     NA+ N++ N  F   DL++       A    D ++ DP R G  ++++K + +L A +IVYVSCNPAT ARD        G+    G Y+LK+   +DMFPHT H+E + + E
Sbjct:  300 VLDLFCGLGNFTIPAAKRAGKVVGVEVSQAMVERGYENARRNSLENLEFHAWDLSQDVSGQAWARQTYDRILIDPPRTGA-LEMVKLMPRLGASKIVYVSCNPATLARD-------AGELMALG-YRLKAAGVMDMFPHTTHVESIAVFE 440          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SALTY (23S rRNA (uracil-5-)-methyltransferase rumA OS=Salmonella typhimurium GN=rumA PE=3 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 8.051e-18
Identity = 60/150 (40.00%), Postives = 77/150 (51.33%), Query Frame = -2
Query:  222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671
            VLDLFCG G   L LA     V G E VP  +     NA  N + N TF   +L +       A    D V+ DP R G    +++ ++KLK  RIVYVSCNPAT ARD + L        +   Y++  L  +DMFPHT H+E + L E
Sbjct:  289 VLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGA-TGVMRHIIKLKPIRIVYVSCNPATLARDSEAL--------VNAGYEVTRLAMLDMFPHTGHLESMVLFE 429          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SALPA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Salmonella paratyphi A GN=rumA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.051e-18
Identity = 60/150 (40.00%), Postives = 77/150 (51.33%), Query Frame = -2
Query:  222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671
            VLDLFCG G   L LA     V G E VP  +     NA  N + N TF   +L +       A    D V+ DP R G    +++ ++KLK  RIVYVSCNPAT ARD + L        +   Y++  L  +DMFPHT H+E + L E
Sbjct:  289 VLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGA-TGVMRHIIKLKPIRIVYVSCNPATLARDSEAL--------VNAGYEVTRLAMLDMFPHTGHLESMVLFE 429          
The following BLAST results are available for this feature:
BLAST of CX069768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
RUMA_LEGPH2.767e-1837.8223S rRNA (uracil-5-)-methyltransferase rumA OS=Leg... [more]
RUMA_LEGPC2.767e-1837.8223S rRNA (uracil-5-)-methyltransferase rumA OS=Leg... [more]
RUMA_LEGPA2.767e-1837.8223S rRNA (uracil-5-)-methyltransferase rumA OS=Leg... [more]
RUMA_HAHCH3.614e-1839.5123S rRNA (uracil-5-)-methyltransferase rumA OS=Hah... [more]
RUMA_ACIAD3.614e-1837.0223S rRNA (uracil-5-)-methyltransferase rumA OS=Aci... [more]
RUMA_ECO574.720e-1840.5423S rRNA (uracil-5-)-methyltransferase rumA OS=Esc... [more]
RUMA_PSEHT6.164e-1836.8723S rRNA (uracil-5-)-methyltransferase rumA OS=Pse... [more]
RUMA_ALCBS6.164e-1837.3323S rRNA (uracil-5-)-methyltransferase rumA OS=Alc... [more]
RUMA_SALTY8.051e-1840.0023S rRNA (uracil-5-)-methyltransferase rumA OS=Sal... [more]
RUMA_SALPA8.051e-1840.0023S rRNA (uracil-5-)-methyltransferase rumA OS=Sal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069768 ID=CX069768; Name=CX069768; organism=Citrus sinensis; type=EST; length=753bp
GCTAATTAGACCGAATCAATCGAATTTCCAATTTTCAAATACTGTGTTTT
CTGCATGAATGAAGCTACAATTCAAAGAAATATAATCATGTAGCTGGAAA
TCACCCATCCAGATGTACAAATTAAAGATTACTGTCAGTTGGACCAGGAA
TAGCTTGGGCCCCTGCCAACCTAGTAGGAGTGCAGCAGCTAGCTTGGAAT
TGCAGCTTAAGGTCAAGAAAGTTCAAGTAGGCATACACATTCGATATGAG
GAGTGTGAGGGAACATATCTACTGGTTGTAAACTTTTTAGTTTATAACAT
CCCTTTATGTTTTGATCTCCCACACCATGACAAAGGTAATCAAGGTCACG
TGCACACGTGGCCGGATTACACGATACATAAACAATGCGTGGTGCCTTCA
GCTTTAGTAGGAACTTGATCAATTTCATGTGCATACCAGGGCGGTTTGGA
TCTGAAATGACAATGTCTGGCTTTGGAAAAGCATTGCCAAAATCTCCACC
AATTTTGTTGAGATCCCCTTGAACAAAAGTAGCATTAGAAATATTGTTCA
ACTTTGCATTTCTACAAGCATCTGATATAGCTTGAGGAACTACTTCATAT
CCATAAACATGTTTAACCCATCTTGCAAGTGTTAAACCAATGGTACCGGT
TCCACAAAATAGGTCAAGCACAATCTTGGAGCCATCACCTCTGAGACCAG
CACAATCTTCAATGAGTTTATAAAGAACCTCTGCCTGGTGAGTATTTGTC
TGG
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