CX069768

Overview
NameCX069768
Unique NameCX069768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SALCH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Salmonella choleraesuis GN=rumA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.051e-18
Identity = 60/150 (40.00%), Postives = 77/150 (51.33%), Query Frame = -2
Query:  222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671
            VLDLFCG G   L LA     V G E VP  +     NA  N + N TF   +L +       A    D V+ DP R G    +++ ++KLK  RIVYVSCNPAT ARD + L        +   Y++  L  +DMFPHT H+E + L E
Sbjct:  289 VLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGA-TGVMRHIIKLKPIRIVYVSCNPATLARDSEAL--------VNAGYEVTRLAMLDMFPHTGHLESMVLFE 429          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y5020_MYCMO (Uncharacterized RNA methyltransferase MMOB5020 OS=Mycoplasma mobile GN=MMOB5020 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.051e-17
Identity = 61/177 (34.46%), Postives = 88/177 (49.72%), Query Frame = -2
Query:  222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752
            Q N   A ++Y  I +   L  +    VLDL+ G GTI L +A   K V G E    +I DA  N + N I N  F+  D+ K        F   D VI DP R G+   +I+ +LKLK  +I+Y+SCN  T A + +   H          Y+++ ++  DMFP T HIE + +L+
Sbjct:  198 QVNKEVANLIYNQISEFINLNEN----VLDLYSGIGTISLLIAAKAKSVTGVERNLDSIEDANFNKEFNKIKNVNFIHQDVIKYLKQNKTYF---DTVIVDPARRGLEEDIIELILKLKPQKIIYLSCNVGTQASNFNKFKHE---------YQIEFIKSYDMFPQTYHIESLMVLK 358          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_ENTS8 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rumA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.051e-17
Identity = 60/150 (40.00%), Postives = 78/150 (52.00%), Query Frame = -2
Query:  222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671
            VLDLFCG G   L LAR  + V G E V   +     NA LN + N TF Q +L +       A    D V+ DP R G    +++ ++KLK  R+VYVSCNPAT  RD + L        +   Y+   L  +DMFPHT H+E + L E
Sbjct:  290 VLDLFCGMGNFTLPLARRAESVVGVEGVAALVEKGDYNAGLNALKNVTFFQHNLEEDVTRQPWAQQGFDKVLLDPARAGA-AGVMQHIVKLKPRRVVYVSCNPATLMRDSETL--------LAAGYRTVRLAMLDMFPHTGHLESMALFE 430          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHEPW (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rumA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 59/153 (38.56%), Postives = 78/153 (50.98%), Query Frame = -2
Query:  219 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 671
            VLDLFCG G   L LA+    V G E VP  +  A  NAK   +   +F   DL+    D        K D ++ DP R G +  ++  L KLK   +VYVSCNPA+ ARD + +        +K  Y+L  +  VDMFP T H+E + L EL
Sbjct:  303 VLDLFCGIGNFSLPLAKSGAEVIGVEGVPAMVEQATVNAKGAALDKVSFYHADLS---ADLSQQPWLGKVDKMLIDPARAGAYESMLS-LKKLKPQALVYVSCNPASLARDSEVI--------LKQGYRLTKIAMVDMFPQTHHLESMALFEL 443          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PSESM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas syringae pv. tomato GN=rumA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 58/152 (38.16%), Postives = 78/152 (51.32%), Query Frame = -2
Query:  216 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 671
            V+DLFCG G   L LA   K V   E V   +  A  NA  N++ N  F Q DL++       A      V+ DP R G   ++++ + K  A R++YVSCNPAT ARD   L        +K  Y+LK    +DMFP T H+E + L E+S
Sbjct:  308 VMDLFCGLGNFALPLASLAKDVVAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQPLTHADWAAEGFSAVLLDPPRDGA-FEVVRQIRKTGAQRLLYVSCNPATLARDTVEL--------VKQGYRLKRAGILDMFPQTAHVEAMALFEVS 450          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PROMH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Proteus mirabilis (strain HI4320) GN=rumA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 57/148 (38.51%), Postives = 79/148 (53.38%), Query Frame = -2
Query:  228 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 671
            VLDLFCG G   L +A+ V  V G E VP  ++ A +NA+LN + N  F   DL+        A    + V+ DP R G   +++  ++ L A +IVYVSCNP T ARD   L        +   Y+L  L+ +DMFP T H+E + L
Sbjct:  299 VLDLFCGMGNFTLPMAKRVDKVVGVEGVPALVAMAKKNAELNQLDNVQFWHADLSADFSAMPWAQEGFNKVLLDPARAGA-AQVMSHIVTLSAEKIVYVSCNPTTLARDSKIL--------LDSGYQLTQLRMLDMFPQTGHLESMAL 437          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_XYLFA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Xylella fastidiosa GN=rumA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 61/167 (36.53%), Postives = 86/167 (51.50%), Query Frame = -2
Query:  222 KLIEDCAGLRGDG-SKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 719
            K+I     L G G  + VLDLFCG G   L LAR V  V G E     +  A  NA+ N + NA F   DL +   D        D ++ DP R G  ++++K L      RIVYVSC+P + ARD D+L +  G       + L+++  +DMFPHT H+E + + +
Sbjct:  283 KMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVDEVVGVEGDIGLVERARENARRNGLGNAEFFVADLTRDQRDAPWMRQGFDKLLLDPPRSGA-IEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQG-------FVLRAVGAMDMFPHTAHVESIAVFD 441          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_BURTA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rumA PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 65/165 (39.39%), Postives = 81/165 (49.09%), Query Frame = -2
Query:  222 RGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 692
            RGD    VLDLFCG G   L LAR  + V G E      S A  NAK N +   T F   +L ++  D  +A    D  + DP R G  + + K L ++          RIVYVSCNP+T ARD   L H  G       Y+LK    V+MFPHT H+E + L E
Sbjct:  310 RGDR---VLDLFCGIGNFTLPLARLAREVVGIEGSETLTSRALANAKENGVDGHTSFASRNLFEVTADDLHALGAFDKFLVDPPREGA-LAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAG-------YRLKGAGVVNMFPHTSHVESIALFE 463          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_XYLFT (23S rRNA (uracil-5-)-methyltransferase rumA OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rumA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.342e-17
Identity = 61/167 (36.53%), Postives = 86/167 (51.50%), Query Frame = -2
Query:  222 KLIEDCAGLRGDG-SKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 719
            K+I     L G G  + VLDLFCG G   L LAR V  V G E     +  A  NA+ N + NA F   DL +   D        D ++ DP R G  ++++K L      RIVYVSC+P + ARD D+L +  G       + L+++  +DMFPHT H+E + + +
Sbjct:  283 KMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEVVGVEGDIGLVERARENARRNGLGNAEFFVADLTRDQRDAPWMRQGFDKLLLDPPRSGA-IEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQG-------FVLRAVGAMDMFPHTAHVESIAVFD 441          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_NITOC (23S rRNA (uracil-5-)-methyltransferase rumA OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rumA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.342e-17
Identity = 67/183 (36.61%), Postives = 90/183 (49.18%), Query Frame = -2
Query:  222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN------AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752
            + NT     + +L+E  +G R      VLDLFCG G   L LA     V G E     ++ A  NA  N + NA F   DLN  G ++ +       F K    + DP R G  +  ++ + KL+  RIVYVSCNPAT ARD   L +  G       Y+L+    +DMFPHT H+E + L E
Sbjct:  279 EVNTKMVRRVLELLEIKSGER------VLDLFCGIGNFTLPLAIAGAEVVGIEGNAGLVARAVANATHNRLENAYFEMADLN--GAEWTHYVWAREGFSK---ALLDPPRSGA-LLAVQQMSKLRVQRIVYVSCNPATLARDAGELVNRQG-------YRLRYAGVIDMFPHTTHVETLALFE 442          
The following BLAST results are available for this feature:
BLAST of CX069768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
RUMA_SALCH8.051e-1840.0023S rRNA (uracil-5-)-methyltransferase rumA OS=Sal... [more]
Y5020_MYCMO1.051e-1734.46Uncharacterized RNA methyltransferase MMOB5020 OS=... [more]
RUMA_ENTS81.051e-1740.0023S rRNA (uracil-5-)-methyltransferase rumA OS=Ent... [more]
RUMA_SHEPW1.373e-1738.5623S rRNA (uracil-5-)-methyltransferase rumA OS=She... [more]
RUMA_PSESM1.373e-1738.1623S rRNA (uracil-5-)-methyltransferase rumA OS=Pse... [more]
RUMA_PROMH1.373e-1738.5123S rRNA (uracil-5-)-methyltransferase rumA OS=Pro... [more]
RUMA_XYLFA1.794e-1736.5323S rRNA (uracil-5-)-methyltransferase rumA OS=Xyl... [more]
RUMA_BURTA1.794e-1739.3923S rRNA (uracil-5-)-methyltransferase rumA OS=Bur... [more]
RUMA_XYLFT2.342e-1736.5323S rRNA (uracil-5-)-methyltransferase rumA OS=Xyl... [more]
RUMA_NITOC2.342e-1736.6123S rRNA (uracil-5-)-methyltransferase rumA OS=Nit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069768 ID=CX069768; Name=CX069768; organism=Citrus sinensis; type=EST; length=753bp
GCTAATTAGACCGAATCAATCGAATTTCCAATTTTCAAATACTGTGTTTT
CTGCATGAATGAAGCTACAATTCAAAGAAATATAATCATGTAGCTGGAAA
TCACCCATCCAGATGTACAAATTAAAGATTACTGTCAGTTGGACCAGGAA
TAGCTTGGGCCCCTGCCAACCTAGTAGGAGTGCAGCAGCTAGCTTGGAAT
TGCAGCTTAAGGTCAAGAAAGTTCAAGTAGGCATACACATTCGATATGAG
GAGTGTGAGGGAACATATCTACTGGTTGTAAACTTTTTAGTTTATAACAT
CCCTTTATGTTTTGATCTCCCACACCATGACAAAGGTAATCAAGGTCACG
TGCACACGTGGCCGGATTACACGATACATAAACAATGCGTGGTGCCTTCA
GCTTTAGTAGGAACTTGATCAATTTCATGTGCATACCAGGGCGGTTTGGA
TCTGAAATGACAATGTCTGGCTTTGGAAAAGCATTGCCAAAATCTCCACC
AATTTTGTTGAGATCCCCTTGAACAAAAGTAGCATTAGAAATATTGTTCA
ACTTTGCATTTCTACAAGCATCTGATATAGCTTGAGGAACTACTTCATAT
CCATAAACATGTTTAACCCATCTTGCAAGTGTTAAACCAATGGTACCGGT
TCCACAAAATAGGTCAAGCACAATCTTGGAGCCATCACCTCTGAGACCAG
CACAATCTTCAATGAGTTTATAAAGAACCTCTGCCTGGTGAGTATTTGTC
TGG
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