CX069768
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SALCH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Salmonella choleraesuis GN=rumA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 8.051e-18 Identity = 60/150 (40.00%), Postives = 77/150 (51.33%), Query Frame = -2 Query: 222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671 VLDLFCG G L LA V G E VP + NA N + N TF +L + A D V+ DP R G +++ ++KLK RIVYVSCNPAT ARD + L + Y++ L +DMFPHT H+E + L E Sbjct: 289 VLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGA-TGVMRHIIKLKPIRIVYVSCNPATLARDSEAL--------VNAGYEVTRLAMLDMFPHTGHLESMVLFE 429
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y5020_MYCMO (Uncharacterized RNA methyltransferase MMOB5020 OS=Mycoplasma mobile GN=MMOB5020 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.051e-17 Identity = 61/177 (34.46%), Postives = 88/177 (49.72%), Query Frame = -2 Query: 222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752 Q N A ++Y I + L + VLDL+ G GTI L +A K V G E +I DA N + N I N F+ D+ K F D VI DP R G+ +I+ +LKLK +I+Y+SCN T A + + H Y+++ ++ DMFP T HIE + +L+ Sbjct: 198 QVNKEVANLIYNQISEFINLNEN----VLDLYSGIGTISLLIAAKAKSVTGVERNLDSIEDANFNKEFNKIKNVNFIHQDVIKYLKQNKTYF---DTVIVDPARRGLEEDIIELILKLKPQKIIYLSCNVGTQASNFNKFKHE---------YQIEFIKSYDMFPQTYHIESLMVLK 358
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_ENTS8 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rumA PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.051e-17 Identity = 60/150 (40.00%), Postives = 78/150 (52.00%), Query Frame = -2 Query: 222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671 VLDLFCG G L LAR + V G E V + NA LN + N TF Q +L + A D V+ DP R G +++ ++KLK R+VYVSCNPAT RD + L + Y+ L +DMFPHT H+E + L E Sbjct: 290 VLDLFCGMGNFTLPLARRAESVVGVEGVAALVEKGDYNAGLNALKNVTFFQHNLEEDVTRQPWAQQGFDKVLLDPARAGA-AGVMQHIVKLKPRRVVYVSCNPATLMRDSETL--------LAAGYRTVRLAMLDMFPHTGHLESMALFE 430
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHEPW (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rumA PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17 Identity = 59/153 (38.56%), Postives = 78/153 (50.98%), Query Frame = -2 Query: 219 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 671 VLDLFCG G L LA+ V G E VP + A NAK + +F DL+ D K D ++ DP R G + ++ L KLK +VYVSCNPA+ ARD + + +K Y+L + VDMFP T H+E + L EL Sbjct: 303 VLDLFCGIGNFSLPLAKSGAEVIGVEGVPAMVEQATVNAKGAALDKVSFYHADLS---ADLSQQPWLGKVDKMLIDPARAGAYESMLS-LKKLKPQALVYVSCNPASLARDSEVI--------LKQGYRLTKIAMVDMFPQTHHLESMALFEL 443
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PSESM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas syringae pv. tomato GN=rumA PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17 Identity = 58/152 (38.16%), Postives = 78/152 (51.32%), Query Frame = -2 Query: 216 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 671 V+DLFCG G L LA K V E V + A NA N++ N F Q DL++ A V+ DP R G ++++ + K A R++YVSCNPAT ARD L +K Y+LK +DMFP T H+E + L E+S Sbjct: 308 VMDLFCGLGNFALPLASLAKDVVAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQPLTHADWAAEGFSAVLLDPPRDGA-FEVVRQIRKTGAQRLLYVSCNPATLARDTVEL--------VKQGYRLKRAGILDMFPQTAHVEAMALFEVS 450
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PROMH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Proteus mirabilis (strain HI4320) GN=rumA PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17 Identity = 57/148 (38.51%), Postives = 79/148 (53.38%), Query Frame = -2 Query: 228 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 671 VLDLFCG G L +A+ V V G E VP ++ A +NA+LN + N F DL+ A + V+ DP R G +++ ++ L A +IVYVSCNP T ARD L + Y+L L+ +DMFP T H+E + L Sbjct: 299 VLDLFCGMGNFTLPMAKRVDKVVGVEGVPALVAMAKKNAELNQLDNVQFWHADLSADFSAMPWAQEGFNKVLLDPARAGA-AQVMSHIVTLSAEKIVYVSCNPTTLARDSKIL--------LDSGYQLTQLRMLDMFPQTGHLESMAL 437
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_XYLFA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Xylella fastidiosa GN=rumA PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17 Identity = 61/167 (36.53%), Postives = 86/167 (51.50%), Query Frame = -2 Query: 222 KLIEDCAGLRGDG-SKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 719 K+I L G G + VLDLFCG G L LAR V V G E + A NA+ N + NA F DL + D D ++ DP R G ++++K L RIVYVSC+P + ARD D+L + G + L+++ +DMFPHT H+E + + + Sbjct: 283 KMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVDEVVGVEGDIGLVERARENARRNGLGNAEFFVADLTRDQRDAPWMRQGFDKLLLDPPRSGA-IEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQG-------FVLRAVGAMDMFPHTAHVESIAVFD 441
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_BURTA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rumA PE=3 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17 Identity = 65/165 (39.39%), Postives = 81/165 (49.09%), Query Frame = -2 Query: 222 RGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 692 RGD VLDLFCG G L LAR + V G E S A NAK N + T F +L ++ D +A D + DP R G + + K L ++ RIVYVSCNP+T ARD L H G Y+LK V+MFPHT H+E + L E Sbjct: 310 RGDR---VLDLFCGIGNFTLPLARLAREVVGIEGSETLTSRALANAKENGVDGHTSFASRNLFEVTADDLHALGAFDKFLVDPPREGA-LAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAG-------YRLKGAGVVNMFPHTSHVESIALFE 463
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_XYLFT (23S rRNA (uracil-5-)-methyltransferase rumA OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rumA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.342e-17 Identity = 61/167 (36.53%), Postives = 86/167 (51.50%), Query Frame = -2 Query: 222 KLIEDCAGLRGDG-SKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 719 K+I L G G + VLDLFCG G L LAR V V G E + A NA+ N + NA F DL + D D ++ DP R G ++++K L RIVYVSC+P + ARD D+L + G + L+++ +DMFPHT H+E + + + Sbjct: 283 KMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEVVGVEGDIGLVERARENARRNGLGNAEFFVADLTRDQRDAPWMRQGFDKLLLDPPRSGA-IEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQG-------FVLRAVGAMDMFPHTAHVESIAVFD 441
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_NITOC (23S rRNA (uracil-5-)-methyltransferase rumA OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rumA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.342e-17 Identity = 67/183 (36.61%), Postives = 90/183 (49.18%), Query Frame = -2 Query: 222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN------AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752 + NT + +L+E +G R VLDLFCG G L LA V G E ++ A NA N + NA F DLN G ++ + F K + DP R G + ++ + KL+ RIVYVSCNPAT ARD L + G Y+L+ +DMFPHT H+E + L E Sbjct: 279 EVNTKMVRRVLELLEIKSGER------VLDLFCGIGNFTLPLAIAGAEVVGIEGNAGLVARAVANATHNRLENAYFEMADLN--GAEWTHYVWAREGFSK---ALLDPPRSGA-LLAVQQMSKLRVQRIVYVSCNPATLARDAGELVNRQG-------YRLRYAGVIDMFPHTTHVETLALFE 442 The following BLAST results are available for this feature:
BLAST of CX069768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 373
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069768 ID=CX069768; Name=CX069768; organism=Citrus sinensis; type=EST; length=753bpback to top |