CX069768

Overview
NameCX069768
Unique NameCX069768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12452 contig Csv1_Contig12452:185..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHESA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella sp. (strain ANA-3) GN=rumA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.492e-21
Identity = 64/154 (41.56%), Postives = 86/154 (55.84%), Query Frame = -2
Query:  216 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 671
            +LDLFCG G   L LA+    V G E VP+ +S A  NA  N +SN TF  GDL+    D        K D ++ DP R G   + +++L K+K  ++VYVSCNPA+ ARD   L        ++  YKL+ L  +DMFP T HIE + L EL+
Sbjct:  307 ILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGDLS---ADLSCEPWMGKIDKLLLDPARAGA-FESLQWLKKMKPRQVVYVSCNPASLARDSAVL--------LERGYKLQKLGLIDMFPQTHHIEAMALFELA 448          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y1779_STRMU (Uncharacterized RNA methyltransferase SMU_1779c OS=Streptococcus mutans GN=SMU_1779c PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 62/176 (35.23%), Postives = 90/176 (51.14%), Query Frame = -2
Query:  225 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 752
            Q N  Q +VLY        +  +    ++D +CG G+IGL  A  VK V G +++P+AI+DA RNA+    +N  +  G    +   +     +   +I DP R G+  KL+K LL  +  ++VYVSCN +T ARDL  L            Y++  +Q VDMFPHT   E V  L
Sbjct:  284 QLNPQQTQVLYHQALQALDVTAEDH--LIDAYCGVGSIGLAFANKVKSVRGMDIIPEAITDAKRNAERMGYTNTYYEMGKAENVIPKWYKDGYQASALIVDPPRTGLDEKLLKTLLTYQPEKMVYVSCNVSTLARDLVQLVK---------VYEVNYIQSVDMFPHTARTEAVVKL 448          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHESM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella sp. (strain MR-4) GN=rumA PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = -2
Query:  216 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 671
            +LDLFCG G   L LA+    V G E VP  +S A  NA  N +SN TF  GDL+    D        K D ++ DP R G   + +++L K+K  ++VYVSCNPA+ ARD   L        ++  YKL+ L  +DMFP T HIE + L EL+
Sbjct:  307 ILDLFCGMGNFSLPLAKLGAEVIGVEGVPDMVSQARENAAANGLSNLTFYHGDLS---ADLSCEPWMGKIDKLLLDPARAGA-FESLQWLKKMKPRQVVYVSCNPASLARDSAVL--------LERGYKLQKLGLIDMFPQTHHIEAMALFELA 448          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHEDO (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rumA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 69/181 (38.12%), Postives = 96/181 (53.04%), Query Frame = -2
Query:  216 AEVLYKLIEDCAG-LRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEV-----VPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 734
            AEV  +++E     L     + VLDLFCG G   L LA   +++ G EV     VP+ +  A  NAK NN++N +F   DL+    D  N     K D ++ DP R G    L ++L K+K  ++VYVSCNPA+ ARD   L        +   Y+LK L  +DMFP T HIE + L E++
Sbjct:  299 AEVNQRMVEQAVNWLDLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQARENAKRNNLANLSFYHADLS---ADLSNEKWLGKIDKLLLDPARAGAFESL-QWLQKMKPKKVVYVSCNPASLARDSSVL--------LSQGYQLKQLSMIDMFPQTHHIEAMALFEIA 467          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_VIBHB (23S rRNA (uracil-5-)-methyltransferase rumA OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rumA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.780e-21
Identity = 67/155 (43.23%), Postives = 84/155 (54.19%), Query Frame = -2
Query:  216 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN---AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 671
            VLDLFCG G   L +A+  KHV G E V + +  A  NA LN I+NA F   +L +   DF     A  + D V+ DP R G    +I  +  L A RIVYVSCNPAT ARD   L        ++  Y+L  L  +DMFPHT H+E + L E S
Sbjct:  297 VLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKAVNNASLNQINNARFYHANLEQ---DFEGQVWAAEQFDKVLLDPARAGA-SGIIDQVSVLGARRIVYVSCNPATLARDSQSL--------LEQGYQLTKLGMLDMFPHTSHLESMALFEKS 439          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y413_STRA5 (Uncharacterized RNA methyltransferase SAG0413 OS=Streptococcus agalactiae serotype V GN=SAG0413 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 61/177 (34.46%), Postives = 90/177 (50.85%), Query Frame = -2
Query:  222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752
            Q N  Q ++LY        ++ D    ++D +CG GTIGL  A  VK V G +++P+AI DA  NA     +N  +  G    I   + +   + + +I DP R G+  KL+  +LK+   ++VYVSCN +T ARDL           +   Y +  +Q VDMFPHT   E V  L+
Sbjct:  283 QLNPKQTQILYSEAVKALDVKEDDD--LIDAYCGVGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALYMGFTNTHYEAGKAEDIIPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDL---------VTLTKVYHVHYIQSVDMFPHTARTEAVVKLQ 448          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_VIBFM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Vibrio fischeri (strain MJ11) GN=rumA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 63/150 (42.00%), Postives = 83/150 (55.33%), Query Frame = -2
Query:  222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671
            VLDLFCG G   L LA+ VK V G E V   +  A  NA+ N++SN +F Q +L +   D   A  K   ++ DP R G    +++ + KLK   +VYVSCNPAT ARD   L        I+  +KL  L  +DMFPHT H+E + L E
Sbjct:  297 VLDLFCGLGNFSLPLAKKVKTVVGIEGVDDMVQRAKLNAERNHLSNVSFYQANLEEEASDQVWASTKFTKILLDPARAGA-AGVMETVAKLKPQTVVYVSCNPATLARDSQLL--------IQHGFKLTRLGMLDMFPHTGHLESMALFE 437          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: TRM2_DANRE (tRNA (uracil-5-)-methyltransferase homolog OS=Danio rerio GN=Trmt2b PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 64/183 (34.97%), Postives = 97/183 (53.01%), Query Frame = -2
Query:  222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD--IVISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCNP-ATCARDLDYLCHGVG-DQNIKG-CYKLKSLQPVDMFPHTPHIECVCLLE 752
            Q N   AE LYK + + +     G+  +LD+ CGTG IG++L+  ++ V G E++ QA+ DA  NA LN + N  F+ G    +  D   +         + +P+R G+H ++++ L    A  R+VY+SC P     R+   LC  VG  + I G  +K     PVD+FPHTPH E V + E
Sbjct:  292 QVNREAAEALYKTVAELSQPCVGGT--LLDVCCGTGAIGISLSPQMERVIGIELIEQAVEDAKFNAALNRVCNCEFLAGKAEVVLPDLMGSLSSDGGLTAVVNPSRAGLHYRVVRALRNHSAIRRLVYISCKPDGEAMRNFRELCCSVGLVRRITGEAFKPVVAVPVDLFPHTPHCELVLVFE 472          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHEWM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rumA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 65/154 (42.21%), Postives = 87/154 (56.49%), Query Frame = -2
Query:  216 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 671
            VLDLFCG G   L LA+    V G E VP+ ++ A  NAK +++S+ TF   DL+    D        K D ++ DP R G   + +++L K+K   IVYVSC+P++ ARD + L        +K  YKLK L  VDMFP T HIE + L ELS
Sbjct:  302 VLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVAQARINAKQSDLSDVTFFHTDLS---ADLSKEPWLGKVDKLLLDPARAGA-FESLQWLKKMKPKSIVYVSCDPSSLARDSEPL--------LKHGYKLKKLGLVDMFPQTHHIEAMALFELS 443          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y448_STRA3 (Uncharacterized RNA methyltransferase gbs0448 OS=Streptococcus agalactiae serotype III GN=gbs0448 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20
Identity = 60/177 (33.90%), Postives = 90/177 (50.85%), Query Frame = -2
Query:  222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752
            Q N  Q ++LY        ++ D    ++D +CG GTIGL  A  VK V G +++P+AI DA  NA     +N  +  G    +   + +   + + +I DP R G+  KL+  +LK+   ++VYVSCN +T ARDL           +   Y +  +Q VDMFPHT   E V  L+
Sbjct:  283 QLNPKQTQILYSEAVKALDVKEDDD--LIDAYCGVGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDVIPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDL---------VTLTKVYHVHYIQSVDMFPHTARTEAVVKLQ 448          
The following BLAST results are available for this feature:
BLAST of CX069768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
RUMA_SHESA3.492e-2141.5623S rRNA (uracil-5-)-methyltransferase rumA OS=She... [more]
Y1779_STRMU5.957e-2135.23Uncharacterized RNA methyltransferase SMU_1779c OS... [more]
RUMA_SHESM5.957e-2141.5623S rRNA (uracil-5-)-methyltransferase rumA OS=She... [more]
RUMA_SHEDO5.957e-2138.1223S rRNA (uracil-5-)-methyltransferase rumA OS=She... [more]
RUMA_VIBHB7.780e-2143.2323S rRNA (uracil-5-)-methyltransferase rumA OS=Vib... [more]
Y413_STRA51.016e-2034.46Uncharacterized RNA methyltransferase SAG0413 OS=S... [more]
RUMA_VIBFM1.327e-2042.0023S rRNA (uracil-5-)-methyltransferase rumA OS=Vib... [more]
TRM2_DANRE1.733e-2034.97tRNA (uracil-5-)-methyltransferase homolog OS=Dani... [more]
RUMA_SHEWM1.733e-2042.2123S rRNA (uracil-5-)-methyltransferase rumA OS=She... [more]
Y448_STRA32.264e-2033.90Uncharacterized RNA methyltransferase gbs0448 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069768 ID=CX069768; Name=CX069768; organism=Citrus sinensis; type=EST; length=753bp
GCTAATTAGACCGAATCAATCGAATTTCCAATTTTCAAATACTGTGTTTT
CTGCATGAATGAAGCTACAATTCAAAGAAATATAATCATGTAGCTGGAAA
TCACCCATCCAGATGTACAAATTAAAGATTACTGTCAGTTGGACCAGGAA
TAGCTTGGGCCCCTGCCAACCTAGTAGGAGTGCAGCAGCTAGCTTGGAAT
TGCAGCTTAAGGTCAAGAAAGTTCAAGTAGGCATACACATTCGATATGAG
GAGTGTGAGGGAACATATCTACTGGTTGTAAACTTTTTAGTTTATAACAT
CCCTTTATGTTTTGATCTCCCACACCATGACAAAGGTAATCAAGGTCACG
TGCACACGTGGCCGGATTACACGATACATAAACAATGCGTGGTGCCTTCA
GCTTTAGTAGGAACTTGATCAATTTCATGTGCATACCAGGGCGGTTTGGA
TCTGAAATGACAATGTCTGGCTTTGGAAAAGCATTGCCAAAATCTCCACC
AATTTTGTTGAGATCCCCTTGAACAAAAGTAGCATTAGAAATATTGTTCA
ACTTTGCATTTCTACAAGCATCTGATATAGCTTGAGGAACTACTTCATAT
CCATAAACATGTTTAACCCATCTTGCAAGTGTTAAACCAATGGTACCGGT
TCCACAAAATAGGTCAAGCACAATCTTGGAGCCATCACCTCTGAGACCAG
CACAATCTTCAATGAGTTTATAAAGAACCTCTGCCTGGTGAGTATTTGTC
TGG
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