CX069768
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHESA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella sp. (strain ANA-3) GN=rumA PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.492e-21 Identity = 64/154 (41.56%), Postives = 86/154 (55.84%), Query Frame = -2 Query: 216 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 671 +LDLFCG G L LA+ V G E VP+ +S A NA N +SN TF GDL+ D K D ++ DP R G + +++L K+K ++VYVSCNPA+ ARD L ++ YKL+ L +DMFP T HIE + L EL+ Sbjct: 307 ILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGDLS---ADLSCEPWMGKIDKLLLDPARAGA-FESLQWLKKMKPRQVVYVSCNPASLARDSAVL--------LERGYKLQKLGLIDMFPQTHHIEAMALFELA 448
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y1779_STRMU (Uncharacterized RNA methyltransferase SMU_1779c OS=Streptococcus mutans GN=SMU_1779c PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21 Identity = 62/176 (35.23%), Postives = 90/176 (51.14%), Query Frame = -2 Query: 225 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 752 Q N Q +VLY + + ++D +CG G+IGL A VK V G +++P+AI+DA RNA+ +N + G + + + +I DP R G+ KL+K LL + ++VYVSCN +T ARDL L Y++ +Q VDMFPHT E V L Sbjct: 284 QLNPQQTQVLYHQALQALDVTAEDH--LIDAYCGVGSIGLAFANKVKSVRGMDIIPEAITDAKRNAERMGYTNTYYEMGKAENVIPKWYKDGYQASALIVDPPRTGLDEKLLKTLLTYQPEKMVYVSCNVSTLARDLVQLVK---------VYEVNYIQSVDMFPHTARTEAVVKL 448
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHESM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella sp. (strain MR-4) GN=rumA PE=3 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21 Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = -2 Query: 216 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 671 +LDLFCG G L LA+ V G E VP +S A NA N +SN TF GDL+ D K D ++ DP R G + +++L K+K ++VYVSCNPA+ ARD L ++ YKL+ L +DMFP T HIE + L EL+ Sbjct: 307 ILDLFCGMGNFSLPLAKLGAEVIGVEGVPDMVSQARENAAANGLSNLTFYHGDLS---ADLSCEPWMGKIDKLLLDPARAGA-FESLQWLKKMKPRQVVYVSCNPASLARDSAVL--------LERGYKLQKLGLIDMFPQTHHIEAMALFELA 448
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHEDO (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rumA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21 Identity = 69/181 (38.12%), Postives = 96/181 (53.04%), Query Frame = -2 Query: 216 AEVLYKLIEDCAG-LRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEV-----VPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 734 AEV +++E L + VLDLFCG G L LA +++ G EV VP+ + A NAK NN++N +F DL+ D N K D ++ DP R G L ++L K+K ++VYVSCNPA+ ARD L + Y+LK L +DMFP T HIE + L E++ Sbjct: 299 AEVNQRMVEQAVNWLDLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQARENAKRNNLANLSFYHADLS---ADLSNEKWLGKIDKLLLDPARAGAFESL-QWLQKMKPKKVVYVSCNPASLARDSSVL--------LSQGYQLKQLSMIDMFPQTHHIEAMALFEIA 467
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_VIBHB (23S rRNA (uracil-5-)-methyltransferase rumA OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rumA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.780e-21 Identity = 67/155 (43.23%), Postives = 84/155 (54.19%), Query Frame = -2 Query: 216 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN---AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 671 VLDLFCG G L +A+ KHV G E V + + A NA LN I+NA F +L + DF A + D V+ DP R G +I + L A RIVYVSCNPAT ARD L ++ Y+L L +DMFPHT H+E + L E S Sbjct: 297 VLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKAVNNASLNQINNARFYHANLEQ---DFEGQVWAAEQFDKVLLDPARAGA-SGIIDQVSVLGARRIVYVSCNPATLARDSQSL--------LEQGYQLTKLGMLDMFPHTSHLESMALFEKS 439
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y413_STRA5 (Uncharacterized RNA methyltransferase SAG0413 OS=Streptococcus agalactiae serotype V GN=SAG0413 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20 Identity = 61/177 (34.46%), Postives = 90/177 (50.85%), Query Frame = -2 Query: 222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752 Q N Q ++LY ++ D ++D +CG GTIGL A VK V G +++P+AI DA NA +N + G I + + + + +I DP R G+ KL+ +LK+ ++VYVSCN +T ARDL + Y + +Q VDMFPHT E V L+ Sbjct: 283 QLNPKQTQILYSEAVKALDVKEDDD--LIDAYCGVGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALYMGFTNTHYEAGKAEDIIPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDL---------VTLTKVYHVHYIQSVDMFPHTARTEAVVKLQ 448
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_VIBFM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Vibrio fischeri (strain MJ11) GN=rumA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20 Identity = 63/150 (42.00%), Postives = 83/150 (55.33%), Query Frame = -2 Query: 222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671 VLDLFCG G L LA+ VK V G E V + A NA+ N++SN +F Q +L + D A K ++ DP R G +++ + KLK +VYVSCNPAT ARD L I+ +KL L +DMFPHT H+E + L E Sbjct: 297 VLDLFCGLGNFSLPLAKKVKTVVGIEGVDDMVQRAKLNAERNHLSNVSFYQANLEEEASDQVWASTKFTKILLDPARAGA-AGVMETVAKLKPQTVVYVSCNPATLARDSQLL--------IQHGFKLTRLGMLDMFPHTGHLESMALFE 437
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: TRM2_DANRE (tRNA (uracil-5-)-methyltransferase homolog OS=Danio rerio GN=Trmt2b PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20 Identity = 64/183 (34.97%), Postives = 97/183 (53.01%), Query Frame = -2 Query: 222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD--IVISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCNP-ATCARDLDYLCHGVG-DQNIKG-CYKLKSLQPVDMFPHTPHIECVCLLE 752 Q N AE LYK + + + G+ +LD+ CGTG IG++L+ ++ V G E++ QA+ DA NA LN + N F+ G + D + + +P+R G+H ++++ L A R+VY+SC P R+ LC VG + I G +K PVD+FPHTPH E V + E Sbjct: 292 QVNREAAEALYKTVAELSQPCVGGT--LLDVCCGTGAIGISLSPQMERVIGIELIEQAVEDAKFNAALNRVCNCEFLAGKAEVVLPDLMGSLSSDGGLTAVVNPSRAGLHYRVVRALRNHSAIRRLVYISCKPDGEAMRNFRELCCSVGLVRRITGEAFKPVVAVPVDLFPHTPHCELVLVFE 472
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_SHEWM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rumA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20 Identity = 65/154 (42.21%), Postives = 87/154 (56.49%), Query Frame = -2 Query: 216 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 671 VLDLFCG G L LA+ V G E VP+ ++ A NAK +++S+ TF DL+ D K D ++ DP R G + +++L K+K IVYVSC+P++ ARD + L +K YKLK L VDMFP T HIE + L ELS Sbjct: 302 VLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVAQARINAKQSDLSDVTFFHTDLS---ADLSKEPWLGKVDKLLLDPARAGA-FESLQWLKKMKPKSIVYVSCDPSSLARDSEPL--------LKHGYKLKKLGLVDMFPQTHHIEAMALFELS 443
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y448_STRA3 (Uncharacterized RNA methyltransferase gbs0448 OS=Streptococcus agalactiae serotype III GN=gbs0448 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20 Identity = 60/177 (33.90%), Postives = 90/177 (50.85%), Query Frame = -2 Query: 222 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 752 Q N Q ++LY ++ D ++D +CG GTIGL A VK V G +++P+AI DA NA +N + G + + + + + +I DP R G+ KL+ +LK+ ++VYVSCN +T ARDL + Y + +Q VDMFPHT E V L+ Sbjct: 283 QLNPKQTQILYSEAVKALDVKEDDD--LIDAYCGVGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDVIPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDL---------VTLTKVYHVHYIQSVDMFPHTARTEAVVKLQ 448 The following BLAST results are available for this feature:
BLAST of CX069768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 373
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069768 ID=CX069768; Name=CX069768; organism=Citrus sinensis; type=EST; length=753bpback to top |