CX069768
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y1137_PYRHO (Uncharacterized RNA methyltransferase PH1137 OS=Pyrococcus horikoshii GN=PH1137 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20 Identity = 69/176 (39.20%), Postives = 92/176 (52.27%), Query Frame = -2 Query: 225 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 752 QTN++QA L K + + +G + VLD++ G GT G+ LA+ V G++ AI A +NAK+N + V D F D VI DP R G+H KLIK L + K IVYVSCNP T ARD++ L YK+ + +DMFPHTPH+E V L Sbjct: 253 QTNSYQAVNLVKKVSELV----EGER-VLDMYSGVGTFGIYLAKRGFKVVGFDSNEFAIEMARKNAKINKVDAVFDVATDREVEVNGF-------DTVIVDPPRVGLHPKLIKKLNREKPEVIVYVSCNPKTFARDIEKL-----------EYKIDEIVALDMFPHTPHLELVAKL 405
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_ALISL (23S rRNA (uracil-5-)-methyltransferase rumA OS=Aliivibrio salmonicida (strain LFI1238) GN=rumA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20 Identity = 64/150 (42.67%), Postives = 81/150 (54.00%), Query Frame = -2 Query: 222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671 VLDLFCG G L LA+ VK V G E V + + A NAK N + N TF Q +L + A K ++ DP R G +++ + KLK +VYVSCNPAT ARD L I+ YKL L +DMFPHT H+E + L E Sbjct: 297 VLDLFCGLGNFSLPLAQKVKTVVGIEGVEEMVKRAQSNAKRNELDNVTFYQANLEEPIDQQVWASTKFTKILLDPARAGA-AGVMQTVAKLKPETVVYVSCNPATLARDSQLL--------IQRGYKLTRLGMLDMFPHTGHLESMALFE 437
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PSEPF (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas fluorescens (strain Pf0-1) GN=rumA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20 Identity = 66/163 (40.49%), Postives = 84/163 (51.53%), Query Frame = -2 Query: 216 LRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD---FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 695 L+ + VLDLFCG G L LA+ + V E V + A NA NN+ N F Q DL++ D GN F V+ DP R G ++++ L L A R+VYVSCNPAT ARD L IK Y+LK +DMFP T H+E + L E S Sbjct: 300 LKPTADERVLDLFCGLGNFALPLAKAAREVVAVEGVQTMVDRAAANAASNNLHNTKFFQADLSQPLTDAEWIGNGF---SAVLLDPPRDGA-FEVVRKLAALGAKRLVYVSCNPATLARDTVEL--------IKQGYRLKRAGILDMFPQTAHVEAMALFEAS 450
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PSEF5 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rumA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20 Identity = 64/152 (42.11%), Postives = 80/152 (52.63%), Query Frame = -2 Query: 216 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 671 VLDLFCG G L LAR V+ V E V ++ A NA NN+ N F Q DL++ A V+ DP R G ++++ L L A R+VYVSCNPAT ARD L IK Y+LK +DMFP T H+E + L E S Sbjct: 308 VLDLFCGLGNFALPLARQVREVVAVEGVATMVARAAENAASNNLHNTRFFQADLSQPLSAAEWADEGFSAVLLDPPRDGA-FEVVRQLATLGAKRLVYVSCNPATLARDTVEL--------IKQGYRLKRAGILDMFPQTAHVEAMALFEAS 450
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_HAEIN (23S rRNA (uracil-5-)-methyltransferase rumA OS=Haemophilus influenzae GN=rumA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20 Identity = 60/148 (40.54%), Postives = 81/148 (54.73%), Query Frame = -2 Query: 228 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 671 VLDLFCG G L LA+ VK G E V + + A +NA+ N I N F Q DL++ + A + ++ DP R G L L +LKA +I+YVSCNPAT RD + LC+ YK++ +DMFPHT H+E + L Sbjct: 296 VLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQKAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNKILLDPPRSGAAFAL-NALCELKAEKILYVSCNPATLVRDAEILCN--------FGYKIEKSAVIDMFPHTGHLESITL 434
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_HAES1 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Haemophilus somnus (strain 129Pt) GN=rumA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.043e-20 Identity = 61/150 (40.67%), Postives = 81/150 (54.00%), Query Frame = -2 Query: 222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671 VLDLFCG G L ++R+VK G E V + A RN + N+ N F Q DL++ + A D ++ DP R G L L L A +IVYVSCNPAT RD++ L +K Y+LK + +DMFPHT H+E + L E Sbjct: 296 VLDLFCGMGNFTLPISRYVKSAVGIEGVLPMVEKARRNGERNHCHNVQFYQCDLSQSFTEQEWAKVPFDKILLDPPRSGAAFAL-NALCYLMAEKIVYVSCNPATLVRDVELL--------LKFGYQLKKVAMIDMFPHTSHLESISLFE 436
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_VIBF1 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rumA PE=3 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20 Identity = 62/150 (41.33%), Postives = 83/150 (55.33%), Query Frame = -2 Query: 222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671 VLDLFCG G L LA+ VK V G E V + + A NA+ N +SN +F Q +L + + A K ++ DP R G +++ + KLK +VYVSCNPAT ARD L I+ +KL L +DMFPHT H+E + L E Sbjct: 297 VLDLFCGLGNFSLPLAKKVKTVVGIEGVDEMVQRAKLNAERNQLSNVSFYQANLEEEVSEQVWASTKFTKILLDPARAGA-AGVMETVAKLKPQTVVYVSCNPATLARDSQLL--------IQHGFKLTRLGMLDMFPHTGHLESMALFE 437
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PHOAS (23S rRNA (uracil-5-)-methyltransferase rumA (Fragment) OS=Photobacterium angustum (strain S14 / CCUG 15956) GN=rumA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20 Identity = 60/148 (40.54%), Postives = 82/148 (55.41%), Query Frame = -2 Query: 228 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 671 VLDLFCG G L LAR K V G E V + ++ A NA N + NATF Q +L++ A + D ++ DP R G +++ ++ L ++VYVSCNPAT ARD L ++ YKL L +DMFPHT H+E + L Sbjct: 68 VLDLFCGLGNFSLPLARRAKAVVGVEGVDEMVARATANAAANGLDNATFYQANLDEDVTKLVWAQEQFDKILLDPARAGA-AGVMQHIVNLAPSKVVYVSCNPATLARDSQML--------LQQGYKLARLGMMDMFPHTGHLESMTL 206
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y1078_PYRAB (Uncharacterized RNA methyltransferase PYRAB10780 OS=Pyrococcus abyssi GN=PYRAB10780 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19 Identity = 66/176 (37.50%), Postives = 92/176 (52.27%), Query Frame = -2 Query: 225 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 752 QTN++QA L + + + +G KI LD++ G GT G+ LA+ +V G++ AI A RN ++NN+ V D F D VI DP R G+H +L+K L + K IVYVSCNP T ARD+ L Y++ + +DMFPHTPH+E V L Sbjct: 252 QTNSYQAVNLVRKVSELV----EGEKI-LDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGF-------DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-----------DYRIDEIVALDMFPHTPHVELVAKL 404
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: TRM2_MOUSE (tRNA (uracil-5-)-methyltransferase homolog OS=Mus musculus GN=Trmt2b PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19 Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = -2 Query: 228 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF--GNAFPKPDIVISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCNP-ATCARDLDYLC--HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 752 Q NT AE+LY++I + +G+ + ++LD+ CGTG IGL++A+ V+G E+V QA+ DA A N ++N F G I K + + +P R G+H ++++ + + +V+VSC P R+ LC Q + + L+ PVD+FPHTPH E V L Sbjct: 312 QINTAGAEMLYRIIGELSGVNSES--LLLDICCGTGVIGLSVAQRASQVHGIELVEQAVEDARWTAAFNGVTNCEFHAGRAETILPQLLKSQKDEKLTVAVVNPARAGLHYRVVRAIRNCRTIHTLVFVSCKPHGESTRNFIELCCPPNSAKQLLGDPFVLREAVPVDLFPHTPHCELVLL 490 The following BLAST results are available for this feature:
BLAST of CX069768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 373
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069768 ID=CX069768; Name=CX069768; organism=Citrus sinensis; type=EST; length=753bpback to top |