CX069768

Overview
NameCX069768
Unique NameCX069768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y1137_PYRHO (Uncharacterized RNA methyltransferase PH1137 OS=Pyrococcus horikoshii GN=PH1137 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20
Identity = 69/176 (39.20%), Postives = 92/176 (52.27%), Query Frame = -2
Query:  225 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 752
            QTN++QA  L K + +      +G + VLD++ G GT G+ LA+    V G++    AI  A +NAK+N +     V  D       F       D VI DP R G+H KLIK L + K   IVYVSCNP T ARD++ L            YK+  +  +DMFPHTPH+E V  L
Sbjct:  253 QTNSYQAVNLVKKVSELV----EGER-VLDMYSGVGTFGIYLAKRGFKVVGFDSNEFAIEMARKNAKINKVDAVFDVATDREVEVNGF-------DTVIVDPPRVGLHPKLIKKLNREKPEVIVYVSCNPKTFARDIEKL-----------EYKIDEIVALDMFPHTPHLELVAKL 405          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_ALISL (23S rRNA (uracil-5-)-methyltransferase rumA OS=Aliivibrio salmonicida (strain LFI1238) GN=rumA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20
Identity = 64/150 (42.67%), Postives = 81/150 (54.00%), Query Frame = -2
Query:  222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671
            VLDLFCG G   L LA+ VK V G E V + +  A  NAK N + N TF Q +L +       A  K   ++ DP R G    +++ + KLK   +VYVSCNPAT ARD   L        I+  YKL  L  +DMFPHT H+E + L E
Sbjct:  297 VLDLFCGLGNFSLPLAQKVKTVVGIEGVEEMVKRAQSNAKRNELDNVTFYQANLEEPIDQQVWASTKFTKILLDPARAGA-AGVMQTVAKLKPETVVYVSCNPATLARDSQLL--------IQRGYKLTRLGMLDMFPHTGHLESMALFE 437          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PSEPF (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas fluorescens (strain Pf0-1) GN=rumA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 66/163 (40.49%), Postives = 84/163 (51.53%), Query Frame = -2
Query:  216 LRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD---FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 695
            L+    + VLDLFCG G   L LA+  + V   E V   +  A  NA  NN+ N  F Q DL++   D    GN F     V+ DP R G   ++++ L  L A R+VYVSCNPAT ARD   L        IK  Y+LK    +DMFP T H+E + L E S
Sbjct:  300 LKPTADERVLDLFCGLGNFALPLAKAAREVVAVEGVQTMVDRAAANAASNNLHNTKFFQADLSQPLTDAEWIGNGF---SAVLLDPPRDGA-FEVVRKLAALGAKRLVYVSCNPATLARDTVEL--------IKQGYRLKRAGILDMFPQTAHVEAMALFEAS 450          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PSEF5 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rumA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 64/152 (42.11%), Postives = 80/152 (52.63%), Query Frame = -2
Query:  216 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 671
            VLDLFCG G   L LAR V+ V   E V   ++ A  NA  NN+ N  F Q DL++       A      V+ DP R G   ++++ L  L A R+VYVSCNPAT ARD   L        IK  Y+LK    +DMFP T H+E + L E S
Sbjct:  308 VLDLFCGLGNFALPLARQVREVVAVEGVATMVARAAENAASNNLHNTRFFQADLSQPLSAAEWADEGFSAVLLDPPRDGA-FEVVRQLATLGAKRLVYVSCNPATLARDTVEL--------IKQGYRLKRAGILDMFPQTAHVEAMALFEAS 450          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_HAEIN (23S rRNA (uracil-5-)-methyltransferase rumA OS=Haemophilus influenzae GN=rumA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 60/148 (40.54%), Postives = 81/148 (54.73%), Query Frame = -2
Query:  228 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 671
            VLDLFCG G   L LA+ VK   G E V + +  A +NA+ N I N  F Q DL++   +   A    + ++ DP R G    L   L +LKA +I+YVSCNPAT  RD + LC+          YK++    +DMFPHT H+E + L
Sbjct:  296 VLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQKAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNKILLDPPRSGAAFAL-NALCELKAEKILYVSCNPATLVRDAEILCN--------FGYKIEKSAVIDMFPHTGHLESITL 434          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_HAES1 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Haemophilus somnus (strain 129Pt) GN=rumA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.043e-20
Identity = 61/150 (40.67%), Postives = 81/150 (54.00%), Query Frame = -2
Query:  222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671
            VLDLFCG G   L ++R+VK   G E V   +  A RN + N+  N  F Q DL++   +   A    D ++ DP R G    L   L  L A +IVYVSCNPAT  RD++ L        +K  Y+LK +  +DMFPHT H+E + L E
Sbjct:  296 VLDLFCGMGNFTLPISRYVKSAVGIEGVLPMVEKARRNGERNHCHNVQFYQCDLSQSFTEQEWAKVPFDKILLDPPRSGAAFAL-NALCYLMAEKIVYVSCNPATLVRDVELL--------LKFGYQLKKVAMIDMFPHTSHLESISLFE 436          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_VIBF1 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rumA PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 62/150 (41.33%), Postives = 83/150 (55.33%), Query Frame = -2
Query:  222 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 671
            VLDLFCG G   L LA+ VK V G E V + +  A  NA+ N +SN +F Q +L +   +   A  K   ++ DP R G    +++ + KLK   +VYVSCNPAT ARD   L        I+  +KL  L  +DMFPHT H+E + L E
Sbjct:  297 VLDLFCGLGNFSLPLAKKVKTVVGIEGVDEMVQRAKLNAERNQLSNVSFYQANLEEEVSEQVWASTKFTKILLDPARAGA-AGVMETVAKLKPQTVVYVSCNPATLARDSQLL--------IQHGFKLTRLGMLDMFPHTGHLESMALFE 437          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: RUMA_PHOAS (23S rRNA (uracil-5-)-methyltransferase rumA (Fragment) OS=Photobacterium angustum (strain S14 / CCUG 15956) GN=rumA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 60/148 (40.54%), Postives = 82/148 (55.41%), Query Frame = -2
Query:  228 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 671
            VLDLFCG G   L LAR  K V G E V + ++ A  NA  N + NATF Q +L++       A  + D ++ DP R G    +++ ++ L   ++VYVSCNPAT ARD   L        ++  YKL  L  +DMFPHT H+E + L
Sbjct:   68 VLDLFCGLGNFSLPLARRAKAVVGVEGVDEMVARATANAAANGLDNATFYQANLDEDVTKLVWAQEQFDKILLDPARAGA-AGVMQHIVNLAPSKVVYVSCNPATLARDSQML--------LQQGYKLARLGMMDMFPHTGHLESMTL 206          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: Y1078_PYRAB (Uncharacterized RNA methyltransferase PYRAB10780 OS=Pyrococcus abyssi GN=PYRAB10780 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19
Identity = 66/176 (37.50%), Postives = 92/176 (52.27%), Query Frame = -2
Query:  225 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 752
            QTN++QA  L + + +      +G KI LD++ G GT G+ LA+   +V G++    AI  A RN ++NN+     V  D       F       D VI DP R G+H +L+K L + K   IVYVSCNP T ARD+  L            Y++  +  +DMFPHTPH+E V  L
Sbjct:  252 QTNSYQAVNLVRKVSELV----EGEKI-LDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGF-------DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-----------DYRIDEIVALDMFPHTPHVELVAKL 404          
BLAST of CX069768 vs. ExPASy Swiss-Prot
Match: TRM2_MOUSE (tRNA (uracil-5-)-methyltransferase homolog OS=Mus musculus GN=Trmt2b PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19
Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = -2
Query:  228 QTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF--GNAFPKPDIVISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCNP-ATCARDLDYLC--HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 752
            Q NT  AE+LY++I + +G+  +   ++LD+ CGTG IGL++A+    V+G E+V QA+ DA   A  N ++N  F  G    I           K  + + +P R G+H ++++ +   +    +V+VSC P     R+   LC       Q +   + L+   PVD+FPHTPH E V L
Sbjct:  312 QINTAGAEMLYRIIGELSGVNSES--LLLDICCGTGVIGLSVAQRASQVHGIELVEQAVEDARWTAAFNGVTNCEFHAGRAETILPQLLKSQKDEKLTVAVVNPARAGLHYRVVRAIRNCRTIHTLVFVSCKPHGESTRNFIELCCPPNSAKQLLGDPFVLREAVPVDLFPHTPHCELVLL 490          
The following BLAST results are available for this feature:
BLAST of CX069768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
Y1137_PYRHO2.264e-2039.20Uncharacterized RNA methyltransferase PH1137 OS=Py... [more]
RUMA_ALISL2.264e-2042.6723S rRNA (uracil-5-)-methyltransferase rumA OS=Ali... [more]
RUMA_PSEPF2.956e-2040.4923S rRNA (uracil-5-)-methyltransferase rumA OS=Pse... [more]
RUMA_PSEF53.861e-2042.1123S rRNA (uracil-5-)-methyltransferase rumA OS=Pse... [more]
RUMA_HAEIN3.861e-2040.5423S rRNA (uracil-5-)-methyltransferase rumA OS=Hae... [more]
RUMA_HAES15.043e-2040.6723S rRNA (uracil-5-)-methyltransferase rumA OS=Hae... [more]
RUMA_VIBF16.586e-2041.3323S rRNA (uracil-5-)-methyltransferase rumA OS=Vib... [more]
RUMA_PHOAS8.602e-2040.5423S rRNA (uracil-5-)-methyltransferase rumA (Fragm... [more]
Y1078_PYRAB1.123e-1937.50Uncharacterized RNA methyltransferase PYRAB10780 O... [more]
TRM2_MOUSE1.123e-1933.15tRNA (uracil-5-)-methyltransferase homolog OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069768 ID=CX069768; Name=CX069768; organism=Citrus sinensis; type=EST; length=753bp
GCTAATTAGACCGAATCAATCGAATTTCCAATTTTCAAATACTGTGTTTT
CTGCATGAATGAAGCTACAATTCAAAGAAATATAATCATGTAGCTGGAAA
TCACCCATCCAGATGTACAAATTAAAGATTACTGTCAGTTGGACCAGGAA
TAGCTTGGGCCCCTGCCAACCTAGTAGGAGTGCAGCAGCTAGCTTGGAAT
TGCAGCTTAAGGTCAAGAAAGTTCAAGTAGGCATACACATTCGATATGAG
GAGTGTGAGGGAACATATCTACTGGTTGTAAACTTTTTAGTTTATAACAT
CCCTTTATGTTTTGATCTCCCACACCATGACAAAGGTAATCAAGGTCACG
TGCACACGTGGCCGGATTACACGATACATAAACAATGCGTGGTGCCTTCA
GCTTTAGTAGGAACTTGATCAATTTCATGTGCATACCAGGGCGGTTTGGA
TCTGAAATGACAATGTCTGGCTTTGGAAAAGCATTGCCAAAATCTCCACC
AATTTTGTTGAGATCCCCTTGAACAAAAGTAGCATTAGAAATATTGTTCA
ACTTTGCATTTCTACAAGCATCTGATATAGCTTGAGGAACTACTTCATAT
CCATAAACATGTTTAACCCATCTTGCAAGTGTTAAACCAATGGTACCGGT
TCCACAAAATAGGTCAAGCACAATCTTGGAGCCATCACCTCTGAGACCAG
CACAATCTTCAATGAGTTTATAAAGAACCTCTGCCTGGTGAGTATTTGTC
TGG
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