CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_VIBC3 (23S rRNA (uracil-5-)-methyltransferase rumB OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rumB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.612e-21
Identity = 83/278 (29.86%), Postives = 121/278 (43.53%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYK--PELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            G+ PY+     G LK ++L    +      + M+ FV  S+     + R L   I++ P +  +              EEE  L    ++ E    +   I   SFFQTN   AE LY      A +R      + DLFCG G   L  A     V G E+ P+AI+ A R+A++  I N +F   D  K      +A   P++V+ +P R G+  +L   L  L    I+Y SCNP T  +D+  L            Y++  +Q  DMFPHT H E
Sbjct:  109 GIPPYNKLKKKGELKFILLTRSENSG----QFMLRFVARSHAVLERIERNLPTLIAAFPTIEVVSVNIQPVHMARLEGEEEIFLTETQSLLEQFNDVPMVIRPKSFFQTNPQVAEQLYATAR--AWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSA---PELVLVNPPRRGLGSELTAQLEALAPQHILYSSCNPQTMVKDIAEL----------ASYQMSRVQWFDMFPHTDHAE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SHELP (23S rRNA (uracil-5-)-methyltransferase rumB OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rumB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.412e-21
Identity = 84/280 (30.00%), Postives = 120/280 (42.86%), Query Frame = 2
Query:   35 QLGLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYK--PELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            Q G+ PY V    G LK ++L T S V+    E M+ FV  S +  P + R L   ++  PE+  +              EEE  L   + + E   G+   I   SFFQT+   A  LY  +      R      + DLFCG G  GL  A     + G E+  +AI+ A  +A+   +    F   D      D      KP+++I +P R G+   L   L +     I+Y SCNP T A+DL  +            Y++  +Q  DMFPHT H E
Sbjct:  107 QAGIPPYRVDKAKGELKFILL-TRSQVRG---EYMLRFVMRSEQAIPRIERELPRLLAEHPEIKVVSVNLQPVHMAILEGEEEIFLTEATRLEEEFNGVPLYIRPKSFFQTHPEVAAKLY--LSARKWTRELAPTSIWDLFCGVGGFGLHCASKEVALTGIEIEAEAIACAKMSAETLGLDKVRFTALDSTSFASD-SRGEEKPELIIVNPPRRGIGEALCHSLSEFAPKAILYSSCNPKTLAKDLHCI----------SGYRVTKVQLFDMFPHTDHFE 369          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_ENTS8 (23S rRNA (uracil-5-)-methyltransferase rumB OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rumB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.412e-21
Identity = 90/279 (32.26%), Postives = 129/279 (46.24%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRP-LVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPK-PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S +  GL   M+ FV  S  K E LR  L   ++ +P++  +              +EE  L  +  + E+  G+   I   SFFQTN   A  LY    D   +R      + DLFCG G  GL  A     + G E+ P+AI+ A  +A+   + N  F   D      DF       PD+V+ +P R G+   L ++L  +    IVY SCN  T A+D       +G+      Y++  +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TQSTLDGGL---MLRFVLRSKEKLEQLRAALPGLLAELPQLKVVTANIQPVHMAIMEGDEEIWLTQQQALAESFNGVPLWIRPQSFFQTNPTVASALYATARDW--VRALPVNHMWDLFCGVGGFGLHCATPEMTLTGIEIAPEAIASARASAQALGLRNVHFQALDST----DFATGQQAVPDLVLVNPPRRGIGKALCEYLSHMAPRYIVYSSCNAQTMAKD-------IGEW---PGYRIARVQLFDMFPHTAHYE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_VIBHB (23S rRNA (uracil-5-)-methyltransferase rumA OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rumA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.456e-21
Identity = 72/186 (38.71%), Postives = 95/186 (51.08%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN---AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            G+T   + N+F Q N    + +     D    + D  + VLDLFCG G   L +A+  KHV G E V + +  A  NA LN I+NA F   +L +   DF     A  + D V+ DP R G    +I  +  L A RIVYVSCNPAT ARD   L        ++  Y+L  L  +DMFPHT H+E
Sbjct:  260 GVTVPFTPNNFIQVNQAVNQKMVAQAVDWLDPKSD--ERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKAVNNASLNQINNARFYHANLEQ---DFEGQVWAAEQFDKVLLDPARAGA-SGIIDQVSVLGARRIVYVSCNPATLARDSQSL--------LEQGYQLTKLGMLDMFPHTSHLE 431          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_PSEPK (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas putida (strain KT2440) GN=rumA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.456e-21
Identity = 71/176 (40.34%), Postives = 92/176 (52.27%), Query Frame = 2
Query:  350 FFQTNTHQAEVLYKLIEDC-AGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            F Q N   A+V   +IE   A L     + VLDLFCG G   L LAR  + V   E V   +  A  NA+ NN+ NA F Q DL++     G A      V+ DP R G   ++++ + +LKA R+VYVSCNPAT ARD   L  G G       Y+LK    +DMFP T H+E +
Sbjct:  283 FVQVN---AQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLSQPLAGTGWAAEGFSAVLLDPPRDGA-FEVVQGIARLKARRLVYVSCNPATLARDAQVLV-GQG-------YRLKRAGILDMFPQTAHVEAM 446          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_HAEIN (23S rRNA (uracil-5-)-methyltransferase rumA OS=Haemophilus influenzae GN=rumA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.820e-21
Identity = 68/197 (34.52%), Postives = 95/197 (48.22%), Query Frame = 2
Query:  284 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +YG +   +   G+        F Q N+   E +     D   L       VLDLFCG G   L LA+ VK   G E V + +  A +NA+ N I N  F Q DL++   +   A    + ++ DP R G    L   L +LKA +I+YVSCNPAT  RD + LC+          YK++    +DMFPHT H+E +
Sbjct:  247 IYGDAPYYQFSDGIKLHFDIRDFIQVNSALNEPMVNTALDWLEL--SQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQKAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNKILLDPPRSGAAFAL-NALCELKAEKILYVSCNPATLVRDAEILCN--------FGYKIEKSAVIDMFPHTGHLESI 432          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y248_PARUW (Uncharacterized RNA methyltransferase pc0248 OS=Protochlamydia amoebophila (strain UWE25) GN=pc0248 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.927e-21
Identity = 64/195 (32.82%), Postives = 97/195 (49.74%), Query Frame = 2
Query:  284 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            + G     + +  L F+ +  +F Q +  Q+  +YK I  C+      SK +LDL+CG G   L LA     V G E    AI  A  N+KLN++ +  F++GD+ KI      +    D+VI +P R G+   +IK L+      ++Y+SC P+T ARDL  LC  +        Y++      DMFP T H+E
Sbjct:  242 IIGNPYSEQKIENLIFRFTPQAFIQNHPEQSLYIYKKI--CSLTIQLKSKKILDLYCGFGITSLLLASQGHFVTGIEYNSDAIRFAKENSKLNHLPHVEFLEGDVEKILPICLKSQKCVDLVIVNPPRIGLSKSVIKILMSALPEDMIYISCMPSTLARDLSILCEDL--------YEIHECTAYDMFPQTSHVE 426          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_HAEI8 (23S rRNA (uracil-5-)-methyltransferase rumB OS=Haemophilus influenzae (strain 86-028NP) GN=rumB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.927e-21
Identity = 85/289 (29.41%), Postives = 129/289 (44.64%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFV--TSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVL----DLFCGTGTIGLTLAR-----WVKHVY--GYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL PY++    G LK+++L     + TG  +LM+ FV  T +  P + R L + +  +P +  +              E+E  L  +  + E    +   I    FFQTN   AE LY   +         S++ +    DLFCG G  GL  A+     W K +   G E+   AI  A  +AK+  + +  F   D   +  +      KPD+VI +P R G+  +L +FL +++   I+Y SCN  T  +DL +L           CYK   +Q  DMFP T H E
Sbjct:  115 GLVPYNIAKQKGELKYILLT--ESIATG--KLMLRFVLRTENKLPLIRRELPKLLEKLPHLEVVSVNLQPLHAAILEGEQEIFLTEQQFLPENFNSIPLFIRPQGFFQTNPKVAEGLYATAQQWV------SELPIYNLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSLDAASVIENKNEN--KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDLQHLT----------CYKPLKIQLFDMFPQTSHYE 381          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_HAEIE (23S rRNA (uracil-5-)-methyltransferase rumB OS=Haemophilus influenzae (strain PittEE) GN=rumB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.296e-20
Identity = 86/285 (30.18%), Postives = 126/285 (44.21%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFV--TSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLAR-----WVKHVY--GYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL PY++    G LK+++L     + TG  +LM+ FV  T +  P + R L + +  +P +  I              E+E  L  +  + E   G+   I    FFQTN   A  LY   +         +  + DLFCG G  GL  A+     W K +   G E+   AI  A  +AK+  + +  F    LN           KPD+VI +P R G+  +L +FL +++   I+Y SCN  T  +DL +L           CYK   +Q  DMFP T H E
Sbjct:  115 GLVPYNIAKQKGELKYILLT--ESIATG--KLMLRFVLRTENKLPLIRRELPKLLEKLPHLEVISINLQPQHAAILEGEQEIFLTEQQFLPENFNGIPLFIRPQGFFQTNPKVAAGLYATAQQWVAEFPIYN--LWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQS--LNAASVMENKNENKPDLVIVNPPRRGIGKQLSEFLNQIQPHFILYSSCNAMTMGKDLQHLT----------CYKPLKIQLFDMFPQTSHYE 381          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_METCA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Methylococcus capsulatus GN=rumA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.296e-20
Identity = 64/149 (42.95%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK---IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            VLDLFCG G   L LAR   HV G E   +A++ A RNA  N I N  F   DL+K    G   G  + K   V+ DP+R G  +++++ +   KA RIVYVSCNP+T ARD   L H  G       Y+L     +DMFPHT H+E +
Sbjct:  301 VLDLFCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNGIGNVEFHVADLSKPESCGSWAGREYHK---VLLDPSRSGA-LEILQCVPNWKAGRIVYVSCNPSTLARDAGILVHEYG-------YRLLKAGVMDMFPHTAHVESI 438          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
RUMB_VIBC32.612e-2129.8623S rRNA (uracil-5-)-methyltransferase rumB OS=Vib... [more]
RUMB_SHELP3.412e-2130.0023S rRNA (uracil-5-)-methyltransferase rumB OS=She... [more]
RUMB_ENTS83.412e-2132.2623S rRNA (uracil-5-)-methyltransferase rumB OS=Ent... [more]
RUMA_VIBHB4.456e-2138.7123S rRNA (uracil-5-)-methyltransferase rumA OS=Vib... [more]
RUMA_PSEPK4.456e-2140.3423S rRNA (uracil-5-)-methyltransferase rumA OS=Pse... [more]
RUMA_HAEIN5.820e-2134.5223S rRNA (uracil-5-)-methyltransferase rumA OS=Hae... [more]
Y248_PARUW9.927e-2132.82Uncharacterized RNA methyltransferase pc0248 OS=Pr... [more]
RUMB_HAEI89.927e-2129.4123S rRNA (uracil-5-)-methyltransferase rumB OS=Hae... [more]
RUMB_HAEIE1.296e-2030.1823S rRNA (uracil-5-)-methyltransferase rumB OS=Hae... [more]
RUMA_METCA1.296e-2042.9523S rRNA (uracil-5-)-methyltransferase rumA OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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