CX069767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_VIBC3 (23S rRNA (uracil-5-)-methyltransferase rumB OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rumB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.612e-21 Identity = 83/278 (29.86%), Postives = 121/278 (43.53%), Query Frame = 2 Query: 41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYK--PELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 G+ PY+ G LK ++L + + M+ FV S+ + R L I++ P + + EEE L ++ E + I SFFQTN AE LY A +R + DLFCG G L A V G E+ P+AI+ A R+A++ I N +F D K +A P++V+ +P R G+ +L L L I+Y SCNP T +D+ L Y++ +Q DMFPHT H E Sbjct: 109 GIPPYNKLKKKGELKFILLTRSENSG----QFMLRFVARSHAVLERIERNLPTLIAAFPTIEVVSVNIQPVHMARLEGEEEIFLTETQSLLEQFNDVPMVIRPKSFFQTNPQVAEQLYATAR--AWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSA---PELVLVNPPRRGLGSELTAQLEALAPQHILYSSCNPQTMVKDIAEL----------ASYQMSRVQWFDMFPHTDHAE 367
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SHELP (23S rRNA (uracil-5-)-methyltransferase rumB OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rumB PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.412e-21 Identity = 84/280 (30.00%), Postives = 120/280 (42.86%), Query Frame = 2 Query: 35 QLGLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYK--PELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 Q G+ PY V G LK ++L T S V+ E M+ FV S + P + R L ++ PE+ + EEE L + + E G+ I SFFQT+ A LY + R + DLFCG G GL A + G E+ +AI+ A +A+ + F D D KP+++I +P R G+ L L + I+Y SCNP T A+DL + Y++ +Q DMFPHT H E Sbjct: 107 QAGIPPYRVDKAKGELKFILL-TRSQVRG---EYMLRFVMRSEQAIPRIERELPRLLAEHPEIKVVSVNLQPVHMAILEGEEEIFLTEATRLEEEFNGVPLYIRPKSFFQTHPEVAAKLY--LSARKWTRELAPTSIWDLFCGVGGFGLHCASKEVALTGIEIEAEAIACAKMSAETLGLDKVRFTALDSTSFASD-SRGEEKPELIIVNPPRRGIGEALCHSLSEFAPKAILYSSCNPKTLAKDLHCI----------SGYRVTKVQLFDMFPHTDHFE 369
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_ENTS8 (23S rRNA (uracil-5-)-methyltransferase rumB OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rumB PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.412e-21 Identity = 90/279 (32.26%), Postives = 129/279 (46.24%), Query Frame = 2 Query: 41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRP-LVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPK-PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 GL+PY+V G LK+L+L T S + GL M+ FV S K E LR L ++ +P++ + +EE L + + E+ G+ I SFFQTN A LY D +R + DLFCG G GL A + G E+ P+AI+ A +A+ + N F D DF PD+V+ +P R G+ L ++L + IVY SCN T A+D +G+ Y++ +Q DMFPHT H E Sbjct: 109 GLTPYNVARKRGELKYLLL-TQSTLDGGL---MLRFVLRSKEKLEQLRAALPGLLAELPQLKVVTANIQPVHMAIMEGDEEIWLTQQQALAESFNGVPLWIRPQSFFQTNPTVASALYATARDW--VRALPVNHMWDLFCGVGGFGLHCATPEMTLTGIEIAPEAIASARASAQALGLRNVHFQALDST----DFATGQQAVPDLVLVNPPRRGIGKALCEYLSHMAPRYIVYSSCNAQTMAKD-------IGEW---PGYRIARVQLFDMFPHTAHYE 367
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_VIBHB (23S rRNA (uracil-5-)-methyltransferase rumA OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rumA PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.456e-21 Identity = 72/186 (38.71%), Postives = 95/186 (51.08%), Query Frame = 2 Query: 320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN---AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 G+T + N+F Q N + + D + D + VLDLFCG G L +A+ KHV G E V + + A NA LN I+NA F +L + DF A + D V+ DP R G +I + L A RIVYVSCNPAT ARD L ++ Y+L L +DMFPHT H+E Sbjct: 260 GVTVPFTPNNFIQVNQAVNQKMVAQAVDWLDPKSD--ERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKAVNNASLNQINNARFYHANLEQ---DFEGQVWAAEQFDKVLLDPARAGA-SGIIDQVSVLGARRIVYVSCNPATLARDSQSL--------LEQGYQLTKLGMLDMFPHTSHLE 431
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_PSEPK (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas putida (strain KT2440) GN=rumA PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.456e-21 Identity = 71/176 (40.34%), Postives = 92/176 (52.27%), Query Frame = 2 Query: 350 FFQTNTHQAEVLYKLIEDC-AGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 F Q N A+V +IE A L + VLDLFCG G L LAR + V E V + A NA+ NN+ NA F Q DL++ G A V+ DP R G ++++ + +LKA R+VYVSCNPAT ARD L G G Y+LK +DMFP T H+E + Sbjct: 283 FVQVN---AQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLSQPLAGTGWAAEGFSAVLLDPPRDGA-FEVVQGIARLKARRLVYVSCNPATLARDAQVLV-GQG-------YRLKRAGILDMFPQTAHVEAM 446
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_HAEIN (23S rRNA (uracil-5-)-methyltransferase rumA OS=Haemophilus influenzae GN=rumA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.820e-21 Identity = 68/197 (34.52%), Postives = 95/197 (48.22%), Query Frame = 2 Query: 284 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 +YG + + G+ F Q N+ E + D L VLDLFCG G L LA+ VK G E V + + A +NA+ N I N F Q DL++ + A + ++ DP R G L L +LKA +I+YVSCNPAT RD + LC+ YK++ +DMFPHT H+E + Sbjct: 247 IYGDAPYYQFSDGIKLHFDIRDFIQVNSALNEPMVNTALDWLEL--SQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQKAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNKILLDPPRSGAAFAL-NALCELKAEKILYVSCNPATLVRDAEILCN--------FGYKIEKSAVIDMFPHTGHLESI 432
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y248_PARUW (Uncharacterized RNA methyltransferase pc0248 OS=Protochlamydia amoebophila (strain UWE25) GN=pc0248 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 9.927e-21 Identity = 64/195 (32.82%), Postives = 97/195 (49.74%), Query Frame = 2 Query: 284 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 + G + + L F+ + +F Q + Q+ +YK I C+ SK +LDL+CG G L LA V G E AI A N+KLN++ + F++GD+ KI + D+VI +P R G+ +IK L+ ++Y+SC P+T ARDL LC + Y++ DMFP T H+E Sbjct: 242 IIGNPYSEQKIENLIFRFTPQAFIQNHPEQSLYIYKKI--CSLTIQLKSKKILDLYCGFGITSLLLASQGHFVTGIEYNSDAIRFAKENSKLNHLPHVEFLEGDVEKILPICLKSQKCVDLVIVNPPRIGLSKSVIKILMSALPEDMIYISCMPSTLARDLSILCEDL--------YEIHECTAYDMFPQTSHVE 426
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_HAEI8 (23S rRNA (uracil-5-)-methyltransferase rumB OS=Haemophilus influenzae (strain 86-028NP) GN=rumB PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 9.927e-21 Identity = 85/289 (29.41%), Postives = 129/289 (44.64%), Query Frame = 2 Query: 41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFV--TSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVL----DLFCGTGTIGLTLAR-----WVKHVY--GYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 GL PY++ G LK+++L + TG +LM+ FV T + P + R L + + +P + + E+E L + + E + I FFQTN AE LY + S++ + DLFCG G GL A+ W K + G E+ AI A +AK+ + + F D + + KPD+VI +P R G+ +L +FL +++ I+Y SCN T +DL +L CYK +Q DMFP T H E Sbjct: 115 GLVPYNIAKQKGELKYILLT--ESIATG--KLMLRFVLRTENKLPLIRRELPKLLEKLPHLEVVSVNLQPLHAAILEGEQEIFLTEQQFLPENFNSIPLFIRPQGFFQTNPKVAEGLYATAQQWV------SELPIYNLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSLDAASVIENKNEN--KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDLQHLT----------CYKPLKIQLFDMFPQTSHYE 381
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_HAEIE (23S rRNA (uracil-5-)-methyltransferase rumB OS=Haemophilus influenzae (strain PittEE) GN=rumB PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.296e-20 Identity = 86/285 (30.18%), Postives = 126/285 (44.21%), Query Frame = 2 Query: 41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFV--TSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLAR-----WVKHVY--GYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 GL PY++ G LK+++L + TG +LM+ FV T + P + R L + + +P + I E+E L + + E G+ I FFQTN A LY + + + DLFCG G GL A+ W K + G E+ AI A +AK+ + + F LN KPD+VI +P R G+ +L +FL +++ I+Y SCN T +DL +L CYK +Q DMFP T H E Sbjct: 115 GLVPYNIAKQKGELKYILLT--ESIATG--KLMLRFVLRTENKLPLIRRELPKLLEKLPHLEVISINLQPQHAAILEGEQEIFLTEQQFLPENFNGIPLFIRPQGFFQTNPKVAAGLYATAQQWVAEFPIYN--LWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQS--LNAASVMENKNENKPDLVIVNPPRRGIGKQLSEFLNQIQPHFILYSSCNAMTMGKDLQHLT----------CYKPLKIQLFDMFPQTSHYE 381
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_METCA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Methylococcus capsulatus GN=rumA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.296e-20 Identity = 64/149 (42.95%), Postives = 82/149 (55.03%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK---IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 VLDLFCG G L LAR HV G E +A++ A RNA N I N F DL+K G G + K V+ DP+R G +++++ + KA RIVYVSCNP+T ARD L H G Y+L +DMFPHT H+E + Sbjct: 301 VLDLFCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNGIGNVEFHVADLSKPESCGSWAGREYHK---VLLDPSRSGA-LEILQCVPNWKAGRIVYVSCNPSTLARDAGILVHEYG-------YRLLKAGVMDMFPHTAHVESI 438 The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 378
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bpback to top |