CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRM2_YEAST (tRNA (uracil-5-)-methyltransferase OS=Saccharomyces cerevisiae GN=TRM2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.693e-20
Identity = 58/195 (29.74%), Postives = 98/195 (50.26%), Query Frame = 2
Query:  302 ITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC--AGLRGDGSK--IVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +TE + G TF  SA  FFQ N     ++ K + D   A  +GD +K   ++D +CG+G   +  ++ V  V G E+   ++S A +NAK N + N  F+ G   K+            +++ DP R G     +K L      +I+Y+SCN  + ARD++Y    + +      ++++S++  D FP T H+E V
Sbjct:  443 VTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDNLQAPAKGDDNKTKFLVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFESIDTPSENTSVIL-DPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQARDVEYF---LKETENGSAHQIESIRGFDFFPQTHHVESV 633          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_SHEON (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella oneidensis GN=rumA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.693e-20
Identity = 63/148 (42.57%), Postives = 83/148 (56.08%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +LDLFCG G   L LAR    V G E VP+ +S A  NA  N +SN TF  GDL+    D  +     K D ++ DP R G +  L ++L K+K  ++VYVSCNPA+ ARD   L        ++  YKL+ L  +DMFP T HIE +
Sbjct:  307 ILDLFCGMGNFSLPLARMGADVIGVEGVPEMVSQARENAVANGLSNLTFYHGDLS---ADLSSEPWMGKIDKLLLDPARAGAYESL-QWLKKMKPRQVVYVSCNPASLARDSAVL--------LERGYKLQKLGLIDMFPQTHHIEAM 442          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_PSEHT (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rumA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.693e-20
Identity = 70/185 (37.84%), Postives = 101/185 (54.59%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL-NKIGGDFGNAFPKP-DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL F+   N+F Q N    + + K  ++   L+GD +  VLDLFCG G   L LA+  K V G E V  A++ A +NA  N+I+NA F   DL NKI  +  + F K  D+++ DP+R G    L +  LK +   I+YVSC+P T ARD   +         +  ++L  +  ++MFPHT HIE
Sbjct:  262 GLKFEFGLNNFIQVNASVNQAMLKQAQNWLALKGDEN--VLDLFCGIGNFSLVLAKQAKTVIGVEGVASAVAMATQNAHTNSITNAQFNCFDLTNKI--ETASWFNKNLDVLVLDPSRTGAITVLEQLPLK-QFKTILYVSCDPVTLARDSAIIS--------QAGFELHKIGLMNMFPHTGHIE 433          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_SHEDO (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rumA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.211e-20
Identity = 71/189 (37.57%), Postives = 98/189 (51.85%), Query Frame = 2
Query:  332 QISANSFFQTNTHQAEVLYKLIEDCAG-LRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEV-----VPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            Q +  +F Q N   AEV  +++E     L     + VLDLFCG G   L LA   +++ G EV     VP+ +  A  NAK NN++N +F   DL+    D  N     K D ++ DP R G    L ++L K+K  ++VYVSCNPA+ ARD   L        +   Y+LK L  +DMFP T HIE +
Sbjct:  288 QFTPGNFVQVN---AEVNQRMVEQAVNWLDLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQARENAKRNNLANLSFYHADLS---ADLSNEKWLGKIDKLLLDPARAGAFESL-QWLQKMKPKKVVYVSCNPASLARDSSVL--------LSQGYQLKQLSMIDMFPQTHHIEAM 461          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_PHOPR (23S rRNA (uracil-5-)-methyltransferase rumA OS=Photobacterium profundum GN=rumA PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.211e-20
Identity = 70/186 (37.63%), Postives = 95/186 (51.08%), Query Frame = 2
Query:  314 LRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG-LRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            L  LT   S   F Q N    +V  K++E     L    S  VLDLFCG G   L LA+  K V G E + + +  A  NA  N  +NATF Q +L++       A    + ++ DP R G    +++ ++KLK  R+VYVSCNPAT ARD   L        +K  Y+L+ L  +DMFP T H+E
Sbjct:  273 LDDLTLHFSPKDFIQVNR---DVNKKMVEQATDWLDLQPSDRVLDLFCGLGNFSLPLAKHAKAVVGVEGIDEMVHRATENAMCNKQNNATFYQANLDEDVTKLAWAREPFNKILLDPARAGA-AGVMEHVVKLKPERVVYVSCNPATLARDSQVL--------LKKGYQLERLGMLDMFPQTGHLE 446          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_HAEI8 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Haemophilus influenzae (strain 86-028NP) GN=rumA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.211e-20
Identity = 68/197 (34.52%), Postives = 93/197 (47.21%), Query Frame = 2
Query:  284 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +YG +   +   G+        F Q N+   E +     D   L       VLDLFCG G   L LA+ VK   G E V + +  A +NA  N I N  F Q DL++   +   A    + ++ DP R G    L   L +LKA +I+YVSCNPAT  RD + LC           YK++    +DMFPHT H+E +
Sbjct:  247 IYGDAPYYQFSDGIKLHFDIRDFIQVNSALNERMINTALDWLEL--SQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQKAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNKILLDPPRSGAAFAL-NALCELKAEKILYVSCNPATLVRDAEILC--------DFGYKIEKSAVIDMFPHTGHLESI 432          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRM2A_MOUSE (tRNA (uracil-5-)-methyltransferase homolog A OS=Mus musculus GN=Trmt2a PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.888e-20
Identity = 89/285 (31.23%), Postives = 128/285 (44.91%), Query Frame = 2
Query:   47 SPYDVHSHSGFLKHLMLRTGSDVKTGL-----PELMVNFVTSSYKPELLRPLVE---KISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC--YKLKSLQPVDMFPHTPHIE 868
            S YD  +++G  K L +RT S  +        P+ + +   +  K  L+   +E   K S V  +  +               E   + G   I E L GLTF+IS ++FFQ NT  AEVLY +I++ A L  DG   VLD+ CGTGTIGL LA  VK V G E+  +A+ DA  NA  N+                                       K+I  + K +   R++YVSCNP     +   LC    ++ +KG   + +K++  VD+FP TPH E
Sbjct:  292 SAYDPETYTGHWKQLTVRTSSRGQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPGKASGVTSLYFVEEGQRKTPSQEGLPLEH--MAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQL--DGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTND--------------------------------------SKVILAIRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGTPFHPVKAV-AVDLFPQTPHCE 532          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SHEAM (23S rRNA (uracil-5-)-methyltransferase rumB OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rumB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.888e-20
Identity = 88/296 (29.73%), Postives = 129/296 (43.58%), Query Frame = 2
Query:    8 LSKITGRDPQLGLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYK--PELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLY----KLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG---NAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            L ++T    + G+ PY V    G LK ++L T S V+    E M+ FV  S    P + R L + ++  P +  +              EEE  L   + + E   G+   I   SFFQTN   A  LY    K +++ +       K + DLFCG G  GL  A     V G E+  +AI  A  +A    + N +F   D      DF     A   P+++I +P R G+  +L + L       I+Y SCNP T A+DL  +            Y++  +Q  DMFPH+ H E
Sbjct:   98 LLELTSFVRRAGIPPYRVDKAKGELKFILL-TRSAVRG---EFMLRFVLRSKDAIPRIERELPKLLADFPAIKVVSVNLQPVHMARLEGEEEIFLTQATRLDEVFNGVPLFIRPKSFFQTNPEVASRLYATAAKWVDELS------PKSLWDLFCGVGGFGLHCANESLPVTGIEIEAEAIDCAKTSAAAMGLDNLSFAALDST----DFAMGQQAQEVPEVIIVNPPRRGIGEELCERLSAFGPRAIIYSSCNPETLAKDLALI----------SGYRIARVQLFDMFPHSDHFE 369          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SHESR (23S rRNA (uracil-5-)-methyltransferase rumB OS=Shewanella sp. (strain MR-7) GN=rumB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.772e-20
Identity = 85/281 (30.25%), Postives = 124/281 (44.13%), Query Frame = 2
Query:   35 QLGLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYKP--ELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG-GDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            Q G+ PY V    G LK ++L T S V+    E M+ FV  S      + R L   ++  P++  +              EEE  L   + + E    +   I   SFFQTN   A  LY+   +        S  + DLFCG G  GL  A     + G E+  +AI+ A  +A+L  +    F+  D      GD      KP+++I +P R G+   L   L +     I+Y SCNP T A+DL +         I+G Y+L  +Q  D+FPH+ H E
Sbjct:  114 QAGIPPYRVDKAKGELKFILL-TRSQVRG---EYMLRFVLRSRDAIARIERELPALMAEYPQIKVVSVNLQPIHMAILEGEEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPQVAAKLYQTAREWVADFAPAS--LWDLFCGVGGFGLHCAAKDIPLTGIEIEAEAIACAKMSAQLMGLDKVQFMALDSTDFAKGDAAQT--KPELIIVNPPRRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGH---------IRG-YRLTKVQLFDLFPHSDHFE 376          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SHESM (23S rRNA (uracil-5-)-methyltransferase rumB OS=Shewanella sp. (strain MR-4) GN=rumB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.772e-20
Identity = 85/281 (30.25%), Postives = 124/281 (44.13%), Query Frame = 2
Query:   35 QLGLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYKP--ELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG-GDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            Q G+ PY V    G LK ++L T S V+    E M+ FV  S      + R L   ++  P++  +              EEE  L   + + E    +   I   SFFQTN   A  LY+   +        S  + DLFCG G  GL  A     + G E+  +AI+ A  +A+L  +    F+  D      GD      KP+++I +P R G+   L   L +     I+Y SCNP T A+DL +         I+G Y+L  +Q  D+FPH+ H E
Sbjct:  114 QAGIPPYRVDKAKGELKFILL-TRSQVRG---EYMLRFVLRSRDAIARIERELPALMAEYPQIKVVSVNLQPVHMAILEGEEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPQVAAKLYQTAREWVADFAPAS--LWDLFCGVGGFGLHCAAKDIPLTGIEIEAEAIACAKMSAQLMGLDKVQFMALDSTDFAKGDAAQT--KPELIIVNPPRRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGH---------IRG-YRLTKVQLFDLFPHSDHFE 376          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
TRM2_YEAST1.693e-2029.74tRNA (uracil-5-)-methyltransferase OS=Saccharomyce... [more]
RUMA_SHEON1.693e-2042.5723S rRNA (uracil-5-)-methyltransferase rumA OS=She... [more]
RUMA_PSEHT1.693e-2037.8423S rRNA (uracil-5-)-methyltransferase rumA OS=Pse... [more]
RUMA_SHEDO2.211e-2037.5723S rRNA (uracil-5-)-methyltransferase rumA OS=She... [more]
RUMA_PHOPR2.211e-2037.6323S rRNA (uracil-5-)-methyltransferase rumA OS=Pho... [more]
RUMA_HAEI82.211e-2034.5223S rRNA (uracil-5-)-methyltransferase rumA OS=Hae... [more]
TRM2A_MOUSE2.888e-2031.23tRNA (uracil-5-)-methyltransferase homolog A OS=Mu... [more]
RUMB_SHEAM2.888e-2029.7323S rRNA (uracil-5-)-methyltransferase rumB OS=She... [more]
RUMB_SHESR3.772e-2030.2523S rRNA (uracil-5-)-methyltransferase rumB OS=She... [more]
RUMB_SHESM3.772e-2030.2523S rRNA (uracil-5-)-methyltransferase rumB OS=She... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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