CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_VIBSL (23S rRNA (uracil-5-)-methyltransferase rumA OS=Vibrio splendidus (strain LGP32) GN=rumA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.772e-20
Identity = 89/275 (32.36%), Postives = 121/275 (44.00%), Query Frame = 2
Query:   80 LKHLMLRTGSDVKTGLPELMVNFVTSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLR-----------GLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            LK L+    S    G  EL++           L+PLVEK      ++++M             EE  TLY      + +R           G+T     N F Q N     +++ + IE    L     + VLDLFCG G   L +A+    V G E V + +  A  NA LN +SN  F Q +L +       A  K D V+ DP R G    ++  +  L A R+VYVSCNPAT ARD + L         K  Y+L  L  +DMFPHT H+E
Sbjct:  183 LKSLLNTFSSLTSLGHVELVLGDTGPVMVLRHLKPLVEKDEQA--LMTLMTLAK---------EEGATLYSMPETDKLVRLVGDAPSYSETGVTLPFEPNHFIQVNQKVNQQMVAQAIE---WLEPQADERVLDLFCGLGNFSLPIAQQSAFVVGVEGVDEMVQQATANAALNQLSNTEFYQANLEEDLSSQLWAKEKFDKVLLDPARAGA-SGIVDQISALGAKRVVYVSCNPATLARDSESL--------EKQGYQLAKLGMLDMFPHTSHLE 434          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_LEGPL (23S rRNA (uracil-5-)-methyltransferase rumA OS=Legionella pneumophila (strain Lens) GN=rumA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.772e-20
Identity = 69/188 (36.70%), Postives = 96/188 (51.06%), Query Frame = 2
Query:  323 LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRG-DGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN---KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +TFQ   N F Q N   AE+  K+++    L     S IVLDLFCG G   L +A+    V G E     +  A  NAK N+I+N  F   +L+   ++      +F K   V+ DP R G  ++++K +  +   RIVYVSCNP T ARD D L +  G       Y L +   +DMFPHT H+E +
Sbjct:  265 ITFQFHPNDFTQVN---AELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNRNMVERAYMNAKSNHITNVDFYAANLDDVMEVRNLVNTSFSK---VLIDPPRSGA-LEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKG-------YVLITAGVMDMFPHTAHVESI 438          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_VIBCH (23S rRNA (uracil-5-)-methyltransferase rumB OS=Vibrio cholerae GN=rumB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.927e-20
Identity = 83/278 (29.86%), Postives = 120/278 (43.17%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYK--PELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            G+ PY+     G LK ++L    +      + M+ FV  S+     + R L   I++ P +  I              EEE  L    ++ E    +   I   SFFQTN   AE LY        +R      + DLFCG G   L  A     V G E+ P+AI+ A R+A++  I N +F   D  K      +A   P++V+ +P R G+  +L   L  L    I+Y SCNP T  +D+  L            Y++  +Q  DMFPHT H E
Sbjct:  109 GIPPYNKLKKKGELKFILLTRSENSG----QFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATAR--TWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSA---PELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL----------SSYQMIRVQWFDMFPHTDHAE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SHESA (23S rRNA (uracil-5-)-methyltransferase rumB OS=Shewanella sp. (strain ANA-3) GN=rumB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.927e-20
Identity = 86/283 (30.39%), Postives = 125/283 (44.17%), Query Frame = 2
Query:   35 QLGLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYKP--ELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN---AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            Q G+ PY V    G LK ++L T S V+    E M+ FV  S      + R L   ++  P++  +              EEE  L   + + E    +   I   SFFQTN   A  LY+   +        S  + DLFCG G  GL  A     + G E+  +AI+ A  +A+L  +    F+  D      DF     A  KP+++I +P R G+   L   L +     I+Y SCNP T A+DL +         I+G Y+L  +Q  D+FPH+ H E
Sbjct:  114 QAGIPPYRVDKAKGELKFILL-TRSQVRG---EYMLRFVLRSRDAIARIERELPTLMAEYPQIKVVSVNLQPVHMAILEGEEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPQVAAKLYQTAREWVADFAPAS--LWDLFCGVGGFGLHCAAKDIPLTGIEIEAEAIACAKMSAQLMGLDKVEFMALDST----DFAKGEAAQTKPELIIVNPPRRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGH---------IRG-YRLTKVQLFDLFPHSDHFE 376          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SHEFN (23S rRNA (uracil-5-)-methyltransferase rumB OS=Shewanella frigidimarina (strain NCIMB 400) GN=rumB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.927e-20
Identity = 80/280 (28.57%), Postives = 115/280 (41.07%), Query Frame = 2
Query:   35 QLGLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYKP--ELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            Q G+ PY V    G LK ++L           + M+ FV  S +    + R L + +   PE+  +              E E  L   + + E L  +   I   SFFQTN   A  LY++  +   +       + DLFCG G  GL  A     + G E+  +AI  A  +A     +   F   D         +A  KPD++I +P R G+   L   L +     IVY SCNP T   DL+Y+            Y++  +Q  DMFPHT H E
Sbjct:  107 QAGIPPYRVDKSKGELKFILLTRSQSSG----QFMLRFVLRSDQAIVRIERELPQLLQEFPEITLVSANIQPIHMAILEGEREIFLTETTRLEEQLNNVPLFIRPKSFFQTNPEVAAQLYQIAREW--VTEFKPNYIWDLFCGVGGFGLHCADSNIRLTGIEIESEAIECAILSATKLGFTQVDFSALDSTHFAKG-QSAQDKPDLIIVNPPRRGLGKSLCDSLSEFAPKAIVYSSCNPHTLMSDLEYITG----------YQITKVQMFDMFPHTDHFE 369          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_LEGPH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rumA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.927e-20
Identity = 69/188 (36.70%), Postives = 95/188 (50.53%), Query Frame = 2
Query:  323 LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRG-DGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN---KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +TFQ   N F Q N   AE+  K++     L     S IVLDLFCG G   L +A+    V G E     +  A  NAK N+I+N  F   +L+   ++      +F K   V+ DP R G  ++++K +  +   RIVYVSCNP T ARD D L +  G       Y L +   +DMFPHT H+E +
Sbjct:  265 ITFQFHPNDFTQVN---AELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEVRNLVNTSFSK---VLIDPPRSGA-LEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKG-------YVLITAGVMDMFPHTAHVESI 438          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_LEGPC (23S rRNA (uracil-5-)-methyltransferase rumA OS=Legionella pneumophila (strain Corby) GN=rumA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.927e-20
Identity = 69/188 (36.70%), Postives = 95/188 (50.53%), Query Frame = 2
Query:  323 LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRG-DGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN---KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +TFQ   N F Q N   AE+  K++     L     S IVLDLFCG G   L +A+    V G E     +  A  NAK N+I+N  F   +L+   ++      +F K   V+ DP R G  ++++K +  +   RIVYVSCNP T ARD D L +  G       Y L +   +DMFPHT H+E +
Sbjct:  265 ITFQFHPNDFTQVN---AELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEVRNLVNTSFSK---VLIDPPRSGA-LEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKG-------YVLITAGVMDMFPHTAHVESI 438          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_LEGPA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Legionella pneumophila (strain Paris) GN=rumA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.927e-20
Identity = 69/188 (36.70%), Postives = 95/188 (50.53%), Query Frame = 2
Query:  323 LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRG-DGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN---KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +TFQ   N F Q N   AE+  K++     L     S IVLDLFCG G   L +A+    V G E     +  A  NAK N+I+N  F   +L+   ++      +F K   V+ DP R G  ++++K +  +   RIVYVSCNP T ARD D L +  G       Y L +   +DMFPHT H+E +
Sbjct:  265 ITFQFHPNDFTQVN---AELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEVRSLVNTSFSK---VLIDPPRSGA-LEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKG-------YVLITAGVMDMFPHTAHVESI 438          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_HAEIN (23S rRNA (uracil-5-)-methyltransferase rumB OS=Haemophilus influenzae GN=rumB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.434e-20
Identity = 83/285 (29.12%), Postives = 125/285 (43.86%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFV--TSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLAR-----WVKHVY--GYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL PY++    G LK+++L      +    +LM+ FV  T +  P + R L + +  +P +  I              E+E  L  +  + E   G+   I    FFQTN   A  LY   +         +  + DLFCG G  GL  A+     W K +   G E+   AI  A  +AK+  + +  F   D   +  +      KPD+VI +P R G+  +L +FL +++   I+Y SCN  T  +DL +L           CYK   +Q  DMFP T H E
Sbjct:  115 GLVPYNIAKQKGELKYILLTESIATE----KLMLRFVLRTENKLPLIRRELPKLLEKLPHLEVISINLQPQHAAILEGEQEIFLTEQQFLPENFNGIPLFIRPRGFFQTNPKVAAGLYATAQQWVAEFPIYN--LWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSLDAASVIENKNEN--KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDLQHLT----------CYKPLKIQLFDMFPQTSHYE 381          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_HAEIG (23S rRNA (uracil-5-)-methyltransferase rumB OS=Haemophilus influenzae (strain PittGG) GN=rumB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.404e-20
Identity = 83/285 (29.12%), Postives = 125/285 (43.86%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFV--TSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLAR-----WVKHVY--GYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL PY++    G LK+++L      +    +LM+ FV  T +  P + R L + +  +P +  I              E+E  L  +  + E   G+   I    FFQTN   A  LY   +         +  + DLFCG G  GL  A+     W K +   G E+   AI  A  +AK+  + +  F   D   +  +      KPD+VI +P R G+  +L +FL +++   I+Y SCN  T  +DL +L           CYK   +Q  DMFP T H E
Sbjct:  115 GLVPYNIAKQKGELKYILLTESIATE----KLMLRFVLRTENKLPLIRRELPKLLEKLPHLEVISINLQPQHAAILEGEQEIFLTEQQFLPENFNGIPLFIRPQGFFQTNPKVAAGLYASAQQWVAEFPIYN--LWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSLDAASVIENKNEN--KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDLQHLT----------CYKPLKIQLFDMFPQTSHYE 381          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
RUMA_VIBSL3.772e-2032.3623S rRNA (uracil-5-)-methyltransferase rumA OS=Vib... [more]
RUMA_LEGPL3.772e-2036.7023S rRNA (uracil-5-)-methyltransferase rumA OS=Leg... [more]
RUMB_VIBCH4.927e-2029.8623S rRNA (uracil-5-)-methyltransferase rumB OS=Vib... [more]
RUMB_SHESA4.927e-2030.3923S rRNA (uracil-5-)-methyltransferase rumB OS=She... [more]
RUMB_SHEFN4.927e-2028.5723S rRNA (uracil-5-)-methyltransferase rumB OS=She... [more]
RUMA_LEGPH4.927e-2036.7023S rRNA (uracil-5-)-methyltransferase rumA OS=Leg... [more]
RUMA_LEGPC4.927e-2036.7023S rRNA (uracil-5-)-methyltransferase rumA OS=Leg... [more]
RUMA_LEGPA4.927e-2036.7023S rRNA (uracil-5-)-methyltransferase rumA OS=Leg... [more]
RUMB_HAEIN6.434e-2029.1223S rRNA (uracil-5-)-methyltransferase rumB OS=Hae... [more]
RUMB_HAEIG8.404e-2029.1223S rRNA (uracil-5-)-methyltransferase rumB OS=Hae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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