CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SALA4 (23S rRNA (uracil-5-)-methyltransferase rumB OS=Salmonella agona (strain SL483) GN=rumB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.098e-19
Identity = 84/278 (30.22%), Postives = 126/278 (45.32%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRPLVEKI-SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S    G+   M+ FV  S  K   LR  +  + + +P++  I              E E  L  +  + E    +   I   SFFQTN   A  LY    D  G      + + DLFCG G  GL  A     + G E+ P+AI+ A ++A    ++   F   D  +     G     PD+V+ +P R G+   L  +L ++    I+Y SCN  T A+D+ +L +          Y+++ +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TESQFDGGM---MLRFVLRSETKLTQLRAALPWLRAQLPQLKVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLP--VRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGET---PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN----------YRIQRVQLFDMFPHTAHYE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_VIBFM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Vibrio fischeri (strain MJ11) GN=rumA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.098e-19
Identity = 68/183 (37.16%), Postives = 91/183 (49.73%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            G     +   F Q N    E + +       L  + S  VLDLFCG G   L LA+ VK V G E V   +  A  NA+ N++SN +F Q +L +   D   A  K   ++ DP R G    +++ + KLK   +VYVSCNPAT ARD   L        I+  +KL  L  +DMFPHT H+E
Sbjct:  260 GTKIYFTPKDFIQVNRKVNEQMVEQALSWLDLNENDS--VLDLFCGLGNFSLPLAKKVKTVVGIEGVDDMVQRAKLNAERNHLSNVSFYQANLEEEASDQVWASTKFTKILLDPARAGA-AGVMETVAKLKPQTVVYVSCNPATLARDSQLL--------IQHGFKLTRLGMLDMFPHTGHLE 431          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_PHOAS (23S rRNA (uracil-5-)-methyltransferase rumA (Fragment) OS=Photobacterium angustum (strain S14 / CCUG 15956) GN=rumA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.098e-19
Identity = 70/183 (38.25%), Postives = 94/183 (51.37%), Query Frame = 2
Query:  323 LTFQISANSFFQTNTHQAEVLYKLIEDCAG-LRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            LTF  S   F Q N    +V  K++E     L       VLDLFCG G   L LAR  K V G E V + ++ A  NA  N + NATF Q +L++       A  + D ++ DP R G    +++ ++ L   ++VYVSCNPAT ARD   L        ++  YKL  L  +DMFPHT H+E
Sbjct:   34 LTF--SPKDFIQVNR---DVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRAKAVVGVEGVDEMVARATANAAANGLDNATFYQANLDEDVTKLVWAQEQFDKILLDPARAGA-AGVMQHIVNLAPSKVVYVSCNPATLARDSQML--------LQQGYKLARLGMMDMFPHTGHLE 202          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_MANSM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rumA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.098e-19
Identity = 65/202 (32.18%), Postives = 95/202 (47.03%), Query Frame = 2
Query:  269 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            E+   +YG+    +    L  Q     F Q N+   + +     D   ++      VLDLFCG G   L L+R VK   G E +   +  A  NA+ N   N  F + DL++   D   A    + ++ DP R G    L   L +LKA +I+YVSCNPAT  RD + L        +   Y++K +  +DMFPHT H+E +
Sbjct:  243 EKTEQIYGQPPFYQLADNLQLQFDIRDFIQVNSLLNQRMITAALDWLDVQKQDH--VLDLFCGMGNFTLPLSRRVKSAVGIEGISAMVEKAKANAERNQCQNVQFYRADLDQNFADEVWATEPFNKILLDPPRTGAAFAL-NALCRLKAEKILYVSCNPATLVRDAEIL--------LNSDYRVKKVAMIDMFPHTGHLESI 433          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SALTY (23S rRNA (uracil-5-)-methyltransferase rumB OS=Salmonella typhimurium GN=rumB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 84/278 (30.22%), Postives = 126/278 (45.32%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRPLVEKI-SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S    G+   M+ FV  S  K   LR  +  + + +P++  I              E E  L  +  + E    +   I   SFFQTN   A  LY    D  G      + + DLFCG G  GL  A     + G E+ P+AI+ A ++A    ++   F   D  +     G     PD+V+ +P R G+   L  +L ++    I+Y SCN  T A+D+ +L +          Y+++ +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TESQFDGGM---MLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLP--VRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGET---PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN----------YRIQRVQLFDMFPHTAHYE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SALTI (23S rRNA (uracil-5-)-methyltransferase rumB OS=Salmonella typhi GN=rumB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 84/278 (30.22%), Postives = 126/278 (45.32%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRPLVEKI-SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S    G+   M+ FV  S  K   LR  +  + + +P++  I              E E  L  +  + E    +   I   SFFQTN   A  LY    D  G      + + DLFCG G  GL  A     + G E+ P+AI+ A ++A    ++   F   D  +     G     PD+V+ +P R G+   L  +L ++    I+Y SCN  T A+D+ +L +          Y+++ +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TESQFDGGM---MLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLP--VRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGET---PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN----------YRIQRVQLFDMFPHTAHYE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SALPK (23S rRNA (uracil-5-)-methyltransferase rumB OS=Salmonella paratyphi A (strain AKU_12601) GN=rumB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 84/278 (30.22%), Postives = 126/278 (45.32%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRPLVEKI-SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S    G+   M+ FV  S  K   LR  +  + + +P++  I              E E  L  +  + E    +   I   SFFQTN   A  LY    D  G      + + DLFCG G  GL  A     + G E+ P+AI+ A ++A    ++   F   D  +     G     PD+V+ +P R G+   L  +L ++    I+Y SCN  T A+D+ +L +          Y+++ +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TESQFDGGM---MLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLP--VRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGET---PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN----------YRIQRVQLFDMFPHTAHYE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SALPA (23S rRNA (uracil-5-)-methyltransferase rumB OS=Salmonella paratyphi A GN=rumB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 84/278 (30.22%), Postives = 126/278 (45.32%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRPLVEKI-SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S    G+   M+ FV  S  K   LR  +  + + +P++  I              E E  L  +  + E    +   I   SFFQTN   A  LY    D  G      + + DLFCG G  GL  A     + G E+ P+AI+ A ++A    ++   F   D  +     G     PD+V+ +P R G+   L  +L ++    I+Y SCN  T A+D+ +L +          Y+++ +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TESQFDGGM---MLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLP--VRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGET---PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN----------YRIQRVQLFDMFPHTAHYE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SALEP (23S rRNA (uracil-5-)-methyltransferase rumB OS=Salmonella enteritidis PT4 (strain P125109) GN=rumB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 84/278 (30.22%), Postives = 126/278 (45.32%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRPLVEKI-SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S    G+   M+ FV  S  K   LR  +  + + +P++  I              E E  L  +  + E    +   I   SFFQTN   A  LY    D  G      + + DLFCG G  GL  A     + G E+ P+AI+ A ++A    ++   F   D  +     G     PD+V+ +P R G+   L  +L ++    I+Y SCN  T A+D+ +L +          Y+++ +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TESQFDGGM---MLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLP--VRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGET---PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN----------YRIQRVQLFDMFPHTAHYE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SALDC (23S rRNA (uracil-5-)-methyltransferase rumB OS=Salmonella dublin (strain CT_02021853) GN=rumB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 84/278 (30.22%), Postives = 126/278 (45.32%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRPLVEKI-SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S    G+   M+ FV  S  K   LR  +  + + +P++  I              E E  L  +  + E    +   I   SFFQTN   A  LY    D  G      + + DLFCG G  GL  A     + G E+ P+AI+ A ++A    ++   F   D  +     G     PD+V+ +P R G+   L  +L ++    I+Y SCN  T A+D+ +L +          Y+++ +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TESQFDGGM---MLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLP--VRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGET---PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN----------YRIQRVQLFDMFPHTAHYE 367          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
RUMB_SALA41.098e-1930.2223S rRNA (uracil-5-)-methyltransferase rumB OS=Sal... [more]
RUMA_VIBFM1.098e-1937.1623S rRNA (uracil-5-)-methyltransferase rumA OS=Vib... [more]
RUMA_PHOAS1.098e-1938.2523S rRNA (uracil-5-)-methyltransferase rumA (Fragm... [more]
RUMA_MANSM1.098e-1932.1823S rRNA (uracil-5-)-methyltransferase rumA OS=Man... [more]
RUMB_SALTY1.433e-1930.2223S rRNA (uracil-5-)-methyltransferase rumB OS=Sal... [more]
RUMB_SALTI1.433e-1930.2223S rRNA (uracil-5-)-methyltransferase rumB OS=Sal... [more]
RUMB_SALPK1.433e-1930.2223S rRNA (uracil-5-)-methyltransferase rumB OS=Sal... [more]
RUMB_SALPA1.433e-1930.2223S rRNA (uracil-5-)-methyltransferase rumB OS=Sal... [more]
RUMB_SALEP1.433e-1930.2223S rRNA (uracil-5-)-methyltransferase rumB OS=Sal... [more]
RUMB_SALDC1.433e-1930.2223S rRNA (uracil-5-)-methyltransferase rumB OS=Sal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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