CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y257_AQUAE (Uncharacterized RNA methyltransferase aq_257 OS=Aquifex aeolicus GN=aq_257 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 69/196 (35.20%), Postives = 97/196 (49.49%), Query Frame = 2
Query:  290 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK-IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            G+ +I   +    +++S +SFFQ N    E   K + D +    +  K  LDL CG G   + L+     + G +  P AI DA  NAK+NN  N  F +    K +    G      ++V+ DP R G+  +    LLK K  +IVY+SCNP T ARDL  L         KG Y+LK L+ +D FP T HIE +
Sbjct:  238 GREHIFMDVGKWQYRVSNDSFFQVNYTLWEDFLKEVLDFS----ESYKKGLDLHCGVGFFTIPLSEQGNFIEGADANPSAIKDAEYNAKINNRDNVIFEEATAFKHLKRRIGEVI---NLVVVDPPRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKIL--------TKGGYELKRLKLIDNFPQTYHIESI 418          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SALAR (23S rRNA (uracil-5-)-methyltransferase rumB OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rumB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 84/278 (30.22%), Postives = 126/278 (45.32%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRPLVEKI-SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S    G+   M+ FV  S  K   LR  +  + + +P++  I              E E  L  +  + E    +   I   SFFQTN   A  LY    D  G      + + DLFCG G  GL  A     + G E+ P+AI+ A ++A    ++   F   D  +     G     PD+V+ +P R G+   L  +L ++    I+Y SCN  T A+D+ +L +          Y+++ +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TESQFDGGM---MLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIMEGETEIYLTDQHALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLP--VRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACARQSAAELGLTRLHFQALDSTQFATAQGET---PDLVLVNPPRRGIGKPLCDYLAQIAPRFIIYSSCNAQTMAQDIRHLPN----------YRIQRVQLFDMFPHTAHYE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_SHESR (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella sp. (strain MR-7) GN=rumA PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 61/148 (41.22%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +LDLFCG G   L LA+    V G E VP+ +S A  NA  N +SN TF  GDL+    D        K D ++ DP R G   + +++L K+K  ++VYVSCNPA+ ARD   L        ++  YKL+ L  +DMFP T HIE +
Sbjct:  307 ILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGDLS---ADLSCEPWMGKIDKLLLDPARAGA-FESLQWLKKMKPRQVVYVSCNPASLARDSAVL--------LERGYKLQKLGLIDMFPQTHHIEAM 442          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_SHESA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella sp. (strain ANA-3) GN=rumA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 61/148 (41.22%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +LDLFCG G   L LA+    V G E VP+ +S A  NA  N +SN TF  GDL+    D        K D ++ DP R G   + +++L K+K  ++VYVSCNPA+ ARD   L        ++  YKL+ L  +DMFP T HIE +
Sbjct:  307 ILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGDLS---ADLSCEPWMGKIDKLLLDPARAGA-FESLQWLKKMKPRQVVYVSCNPASLARDSAVL--------LERGYKLQKLGLIDMFPQTHHIEAM 442          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_KLEP3 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Klebsiella pneumoniae (strain 342) GN=rumA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 67/186 (36.02%), Postives = 91/186 (48.92%), Query Frame = 2
Query:  311 TLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            T  GL    S   F Q N    + + +   +   L+ +    VLDLFCG G   L LA    HV G E VP  +     NA LN +SN TF   +L +       A    D V+ DP R G    ++  ++KL   R+VYVSCNPAT ARD + L        ++  Y+++ L  +DMFPHT H+E
Sbjct:  250 TSDGLRLVFSPRDFIQVNDGVNQQMVRTALEWLDLQPEDR--VLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAALNGLSNVTFFHENLEEDVTRQAWAKHGFDKVLLDPARAGA-PGVMPHIIKLAPRRVVYVSCNPATLARDSETL--------LQAGYQIQRLAMLDMFPHTGHLE 424          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SALPC (23S rRNA (uracil-5-)-methyltransferase rumB OS=Salmonella paratyphi C (strain RKS4594) GN=rumB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 84/278 (30.22%), Postives = 126/278 (45.32%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRPLVEKI-SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S    G+   M+ FV  S  K   LR  +  + + +P++  I              E E  L  +  + E    +   I   SFFQTN   A  LY    D  G      + + DLFCG G  GL  A     + G E+ P+AI+ A ++A    ++   F   D  +     G     PD+V+ +P R G+   L  +L ++    I+Y SCN  T A+D+ +L +          Y+++ +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TESQFDGGM---MLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIMEGETEIYLTDQQALVERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLP--VRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIAQGET---PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN----------YRIQRVQLFDMFPHTAHYE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SALPB (23S rRNA (uracil-5-)-methyltransferase rumB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rumB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 84/278 (30.22%), Postives = 126/278 (45.32%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRPLVEKI-SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S    G+   M+ FV  S  K   LR  +  + + +P++  I              E E  L  +  + E    +   I   SFFQTN   A  LY    D  G      + + DLFCG G  GL  A     + G E+ P+AI+ A ++A    ++   F   D  +     G     PD+V+ +P R G+   L  +L ++    I+Y SCN  T A+D+ +L +          Y+++ +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TESQFDGGM---MLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIMEGETEIYLTDQQALVERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLP--VRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIAQGET---PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN----------YRIQRVQLFDMFPHTAHYE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SALNS (23S rRNA (uracil-5-)-methyltransferase rumB OS=Salmonella newport (strain SL254) GN=rumB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 84/278 (30.22%), Postives = 126/278 (45.32%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRPLVEKI-SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S    G+   M+ FV  S  K   LR  +  + + +P++  I              E E  L  +  + E    +   I   SFFQTN   A  LY    D  G      + + DLFCG G  GL  A     + G E+ P+AI+ A ++A    ++   F   D  +     G     PD+V+ +P R G+   L  +L ++    I+Y SCN  T A+D+ +L +          Y+++ +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TESQFDGGM---MLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLP--VRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIAQGET---PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN----------YRIQRVQLFDMFPHTAHYE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SALCH (23S rRNA (uracil-5-)-methyltransferase rumB OS=Salmonella choleraesuis GN=rumB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 84/278 (30.22%), Postives = 126/278 (45.32%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVT-SSYKPELLRPLVEKI-SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GL+PY+V    G LK+L+L T S    G+   M+ FV  S  K   LR  +  + + +P++  I              E E  L  +  + E    +   I   SFFQTN   A  LY    D  G      + + DLFCG G  GL  A     + G E+ P+AI+ A ++A    ++   F   D  +     G     PD+V+ +P R G+   L  +L ++    I+Y SCN  T A+D+ +L +          Y+++ +Q  DMFPHT H E
Sbjct:  109 GLTPYNVARKRGELKYLLL-TESQFDGGM---MLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIMEGETEIYLTDQQALVERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLP--VRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIAQGET---PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN----------YRIQRVQLFDMFPHTAHYE 367          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_ACIBY (23S rRNA (uracil-5-)-methyltransferase rumA OS=Acinetobacter baumannii (strain AYE) GN=rumA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 70/188 (37.23%), Postives = 92/188 (48.94%), Query Frame = 2
Query:  323 LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            + F  S   F Q N    E + +L   C  L+    + VLDLFCG G   L LAR V     V G E   + +  A  NAK NN+  A+F   DL K       A    D ++ DP R G + ++++++    A RIVYVSCNPAT ARD   L  HG         Y+LK    +DMF HT H+E +
Sbjct:  277 VNFAFSPLDFTQVNATVNEQMVQLA--CELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEEMVQRATDNAKRNNLVQASFFSQDLTKDFSHHSWANQGFDALLIDPPRAGAY-EIMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHG---------YQLKKAAVMDMFTHTEHVESI 452          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
Y257_AQUAE1.872e-1935.20Uncharacterized RNA methyltransferase aq_257 OS=Aq... [more]
RUMB_SALAR1.872e-1930.2223S rRNA (uracil-5-)-methyltransferase rumB OS=Sal... [more]
RUMA_SHESR1.872e-1941.2223S rRNA (uracil-5-)-methyltransferase rumA OS=She... [more]
RUMA_SHESA1.872e-1941.2223S rRNA (uracil-5-)-methyltransferase rumA OS=She... [more]
RUMA_KLEP31.872e-1936.0223S rRNA (uracil-5-)-methyltransferase rumA OS=Kle... [more]
RUMB_SALPC2.445e-1930.2223S rRNA (uracil-5-)-methyltransferase rumB OS=Sal... [more]
RUMB_SALPB2.445e-1930.2223S rRNA (uracil-5-)-methyltransferase rumB OS=Sal... [more]
RUMB_SALNS2.445e-1930.2223S rRNA (uracil-5-)-methyltransferase rumB OS=Sal... [more]
RUMB_SALCH2.445e-1930.2223S rRNA (uracil-5-)-methyltransferase rumB OS=Sal... [more]
RUMA_ACIBY2.445e-1937.2323S rRNA (uracil-5-)-methyltransferase rumA OS=Aci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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