CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_NITMU (23S rRNA (uracil-5-)-methyltransferase rumA OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rumA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.615e-16
Identity = 56/148 (37.84%), Postives = 78/148 (52.70%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            + DLFCG G   L +AR    V GYE     +S A +N++ N ++ +T F++ +L +I   +       D ++ DP R G    +     K LK  RIVYVSCNPAT ARD   L H  G       Y LK+   ++MFPHT H+E +
Sbjct:  289 IADLFCGLGNFTLPVARRGAQVVGYEGSAALVSRARQNSQRNGLAGSTRFMEANLFEIDESWMREQGDFDKMLIDPPREGAVAVVTALEEKQLKPWRIVYVSCNPATLARDASVLVHRNG-------YALKAAGVINMFPHTAHVESI 429          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_STRMK (23S rRNA (uracil-5-)-methyltransferase rumA OS=Stenotrophomonas maltophilia (strain K279a) GN=rumA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 65/176 (36.93%), Postives = 86/176 (48.86%), Query Frame = 2
Query:  350 FFQTNTHQAEVLYKLIEDCAGLRGDGS-KIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            F Q N   A++  K+I     L   G  + VLDLFCG G   L LAR V+ V G E     ++ A  NA  N ++NA F   DL +            D ++ DP R G    L +  LK +  RIVYVSC+P + ARD  YL +  G       + L S   +DMFPHT H+E +
Sbjct:  274 FIQVN---AKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVREVVGVEGDAGLVARARENAVRNGLANAQFFSADLTQDQRSTPWMRQGFDKLLLDPPRSGAIEVLQQLPLK-QFKRIVYVSCHPGSLARDAGYLVNEQG-------FTLVSAGAMDMFPHTAHVESI 438          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y1748_GEOSL (Uncharacterized RNA methyltransferase GSU1748 OS=Geobacter sulfurreducens GN=GSU1748 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.640e-15
Identity = 68/186 (36.56%), Postives = 82/186 (44.09%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            R L+       F Q N  Q  VL       AG+ G G + VLDLFCG G   L LA     + G E    +I DA +NA  N I +  F+  D          A    D VI DP R G    + +  + L   RIVYVSC+P T  RDL  L         K  Y++     VDMFP T HIE V
Sbjct:  258 RPLSLSFRRGGFSQVNYRQNRVLVSKALHLAGV-GPGRR-VLDLFCGNGNFSLPLASGGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDAADGTRRLRAAGEHFDTVILDPPRTGARDAVGEVAI-LAPERIVYVSCDPPTLGRDLGVL--------RKAGYRVVGSHGVDMFPQTYHIESV 432          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_YERE8 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rumA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.142e-15
Identity = 60/185 (32.43%), Postives = 86/185 (46.49%), Query Frame = 2
Query:  314 LRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            + GL        F Q N    + +  + +  A L     + VLDLFCG G   L LA+  + V G E V   +++   NA  N + N +F   +L         A    D V+ DP R G    ++  ++KL   R+VYVSCNP T ARD   L        +   Y+L  ++ +DMFPHT H+E
Sbjct:  257 IEGLRLAFHPRDFIQVNDTVNQQM--VAQAIAWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAALVANGQYNALNNALPNVSFFHENLESDISRQPWATQGFDKVLLDPARAGA-AGVMSHIVKLAPKRVVYVSCNPTTLARDSQVL--------LAAGYRLAQVRMLDMFPHTGHLE 430          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_XANOR (23S rRNA (uracil-5-)-methyltransferase rumA OS=Xanthomonas oryzae pv. oryzae GN=rumA PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.142e-15
Identity = 55/146 (37.67%), Postives = 76/146 (52.05%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            VLDLFCG G   L LAR V+ V G E     ++ A  NA+ N + NA F   DL +   +        D ++ DP R G  +++++ L      RIVYVSC+P + ARD  YL +  G       + L S   +DMFPHT H+E +
Sbjct:  301 VLDLFCGLGNFTLPLARVVREVVGVEGDAGLVARAKDNAQRNGLDNAQFYAADLTQDQRNAAWMRQGFDKLLLDPPRSGA-LEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQG-------FTLVSAGAMDMFPHTAHVESI 438          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_XANOM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rumA PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.142e-15
Identity = 55/146 (37.67%), Postives = 76/146 (52.05%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            VLDLFCG G   L LAR V+ V G E     ++ A  NA+ N + NA F   DL +   +        D ++ DP R G  +++++ L      RIVYVSC+P + ARD  YL +  G       + L S   +DMFPHT H+E +
Sbjct:  301 VLDLFCGLGNFTLPLARVVREVVGVEGDAGLVARAKDNAQRNGLDNAQFYAADLTQDQRNAAWMRQGFDKLLLDPPRSGA-LEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQG-------FTLVSAGAMDMFPHTAHVESI 438          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_XANAC (23S rRNA (uracil-5-)-methyltransferase rumA OS=Xanthomonas axonopodis pv. citri GN=rumA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.798e-15
Identity = 55/146 (37.67%), Postives = 75/146 (51.37%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            VLDLFCG G   L LAR V+ V G E     ++ A  NA+ N + NA F   DL +            D ++ DP R G  +++++ L      RIVYVSC+P + ARD  YL +  G       + L S   +DMFPHT H+E +
Sbjct:  301 VLDLFCGLGNFTLPLARVVREVVGVEGDAGLVARAKENAQRNGLDNAQFYAADLTQDQRSAPWMRQGFDKLLLDPPRSGA-LEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQG-------FTLVSAGAMDMFPHTAHVESI 438          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_SHEPA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rumA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.654e-15
Identity = 55/146 (37.67%), Postives = 75/146 (51.37%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            VLDLFCG G   L LA+    V G E V   +  A  NAK + +    F   DL+    D        K D ++ DP R G + + ++ L KLK   +VYVSCNPA+ ARD + +        +K  Y+LK +  +DMFP T H+E
Sbjct:  303 VLDLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYHADLS---ADLSKEPWLGKVDKMLIDPARAGAY-ESMQSLKKLKPKALVYVSCNPASLARDSEVI--------LKQGYQLKKIGLIDMFPQTHHLE 436          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_PSEU2 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rumA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.654e-15
Identity = 54/146 (36.99%), Postives = 74/146 (50.68%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            V+DLFCG G   L LA   + V   E V   +  A  NA  N++ N  F Q DL++       A      V+ DP R G   ++++ + K  A R++YVSCNPAT ARD   L        I+  Y+LK    +DMFP T H+E +
Sbjct:  308 VMDLFCGLGNFALPLAGLARDVVAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQPLTQADWAAEGFSAVLLDPPRDGA-FEVVRQIRKTGARRLLYVSCNPATLARDAVEL--------IRQGYRLKRAGILDMFPQTAHVEAM 444          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_ERWCT (23S rRNA (uracil-5-)-methyltransferase rumA OS=Erwinia carotovora subsp. atroseptica GN=rumA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.654e-15
Identity = 60/183 (32.79%), Postives = 84/183 (45.90%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GLT   S   F Q N    + +  + +  A L       +LDLFCG G   L LA+    V G E V   +     NA+ N +SN TF   +L         A    D ++ DP R G    +++ + +L   R+VYVSCN  T ARD   L        +   Y+L ++  +DMFPHT H+E
Sbjct:  264 GLTLAFSPRDFIQVNDAVNQQM--VAQALAWLDVQSQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWAAQGFDKILLDPARAGA-AGVMEQITRLAPKRVVYVSCNATTLARDSKVL--------LAAGYRLANVAMLDMFPHTGHLE 435          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
RUMA_NITMU9.615e-1637.8423S rRNA (uracil-5-)-methyltransferase rumA OS=Nit... [more]
RUMA_STRMK1.256e-1536.9323S rRNA (uracil-5-)-methyltransferase rumA OS=Ste... [more]
Y1748_GEOSL1.640e-1536.56Uncharacterized RNA methyltransferase GSU1748 OS=G... [more]
RUMA_YERE82.142e-1532.4323S rRNA (uracil-5-)-methyltransferase rumA OS=Yer... [more]
RUMA_XANOR2.142e-1537.6723S rRNA (uracil-5-)-methyltransferase rumA OS=Xan... [more]
RUMA_XANOM2.142e-1537.6723S rRNA (uracil-5-)-methyltransferase rumA OS=Xan... [more]
RUMA_XANAC2.798e-1537.6723S rRNA (uracil-5-)-methyltransferase rumA OS=Xan... [more]
RUMA_SHEPA3.654e-1537.6723S rRNA (uracil-5-)-methyltransferase rumA OS=She... [more]
RUMA_PSEU23.654e-1536.9923S rRNA (uracil-5-)-methyltransferase rumA OS=Pse... [more]
RUMA_ERWCT3.654e-1532.7923S rRNA (uracil-5-)-methyltransferase rumA OS=Erw... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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