CX069767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_NITMU (23S rRNA (uracil-5-)-methyltransferase rumA OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rumA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.615e-16 Identity = 56/148 (37.84%), Postives = 78/148 (52.70%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 + DLFCG G L +AR V GYE +S A +N++ N ++ +T F++ +L +I + D ++ DP R G + K LK RIVYVSCNPAT ARD L H G Y LK+ ++MFPHT H+E + Sbjct: 289 IADLFCGLGNFTLPVARRGAQVVGYEGSAALVSRARQNSQRNGLAGSTRFMEANLFEIDESWMREQGDFDKMLIDPPREGAVAVVTALEEKQLKPWRIVYVSCNPATLARDASVLVHRNG-------YALKAAGVINMFPHTAHVESI 429
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_STRMK (23S rRNA (uracil-5-)-methyltransferase rumA OS=Stenotrophomonas maltophilia (strain K279a) GN=rumA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15 Identity = 65/176 (36.93%), Postives = 86/176 (48.86%), Query Frame = 2 Query: 350 FFQTNTHQAEVLYKLIEDCAGLRGDGS-KIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 F Q N A++ K+I L G + VLDLFCG G L LAR V+ V G E ++ A NA N ++NA F DL + D ++ DP R G L + LK + RIVYVSC+P + ARD YL + G + L S +DMFPHT H+E + Sbjct: 274 FIQVN---AKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVREVVGVEGDAGLVARARENAVRNGLANAQFFSADLTQDQRSTPWMRQGFDKLLLDPPRSGAIEVLQQLPLK-QFKRIVYVSCHPGSLARDAGYLVNEQG-------FTLVSAGAMDMFPHTAHVESI 438
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y1748_GEOSL (Uncharacterized RNA methyltransferase GSU1748 OS=Geobacter sulfurreducens GN=GSU1748 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.640e-15 Identity = 68/186 (36.56%), Postives = 82/186 (44.09%), Query Frame = 2 Query: 317 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 R L+ F Q N Q VL AG+ G G + VLDLFCG G L LA + G E +I DA +NA N I + F+ D A D VI DP R G + + + L RIVYVSC+P T RDL L K Y++ VDMFP T HIE V Sbjct: 258 RPLSLSFRRGGFSQVNYRQNRVLVSKALHLAGV-GPGRR-VLDLFCGNGNFSLPLASGGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDAADGTRRLRAAGEHFDTVILDPPRTGARDAVGEVAI-LAPERIVYVSCDPPTLGRDLGVL--------RKAGYRVVGSHGVDMFPQTYHIESV 432
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_YERE8 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rumA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.142e-15 Identity = 60/185 (32.43%), Postives = 86/185 (46.49%), Query Frame = 2 Query: 314 LRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 + GL F Q N + + + + A L + VLDLFCG G L LA+ + V G E V +++ NA N + N +F +L A D V+ DP R G ++ ++KL R+VYVSCNP T ARD L + Y+L ++ +DMFPHT H+E Sbjct: 257 IEGLRLAFHPRDFIQVNDTVNQQM--VAQAIAWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAALVANGQYNALNNALPNVSFFHENLESDISRQPWATQGFDKVLLDPARAGA-AGVMSHIVKLAPKRVVYVSCNPTTLARDSQVL--------LAAGYRLAQVRMLDMFPHTGHLE 430
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_XANOR (23S rRNA (uracil-5-)-methyltransferase rumA OS=Xanthomonas oryzae pv. oryzae GN=rumA PE=3 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 2.142e-15 Identity = 55/146 (37.67%), Postives = 76/146 (52.05%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 VLDLFCG G L LAR V+ V G E ++ A NA+ N + NA F DL + + D ++ DP R G +++++ L RIVYVSC+P + ARD YL + G + L S +DMFPHT H+E + Sbjct: 301 VLDLFCGLGNFTLPLARVVREVVGVEGDAGLVARAKDNAQRNGLDNAQFYAADLTQDQRNAAWMRQGFDKLLLDPPRSGA-LEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQG-------FTLVSAGAMDMFPHTAHVESI 438
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_XANOM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rumA PE=3 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 2.142e-15 Identity = 55/146 (37.67%), Postives = 76/146 (52.05%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 VLDLFCG G L LAR V+ V G E ++ A NA+ N + NA F DL + + D ++ DP R G +++++ L RIVYVSC+P + ARD YL + G + L S +DMFPHT H+E + Sbjct: 301 VLDLFCGLGNFTLPLARVVREVVGVEGDAGLVARAKDNAQRNGLDNAQFYAADLTQDQRNAAWMRQGFDKLLLDPPRSGA-LEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQG-------FTLVSAGAMDMFPHTAHVESI 438
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_XANAC (23S rRNA (uracil-5-)-methyltransferase rumA OS=Xanthomonas axonopodis pv. citri GN=rumA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.798e-15 Identity = 55/146 (37.67%), Postives = 75/146 (51.37%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 VLDLFCG G L LAR V+ V G E ++ A NA+ N + NA F DL + D ++ DP R G +++++ L RIVYVSC+P + ARD YL + G + L S +DMFPHT H+E + Sbjct: 301 VLDLFCGLGNFTLPLARVVREVVGVEGDAGLVARAKENAQRNGLDNAQFYAADLTQDQRSAPWMRQGFDKLLLDPPRSGA-LEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQG-------FTLVSAGAMDMFPHTAHVESI 438
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_SHEPA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rumA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.654e-15 Identity = 55/146 (37.67%), Postives = 75/146 (51.37%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 VLDLFCG G L LA+ V G E V + A NAK + + F DL+ D K D ++ DP R G + + ++ L KLK +VYVSCNPA+ ARD + + +K Y+LK + +DMFP T H+E Sbjct: 303 VLDLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYHADLS---ADLSKEPWLGKVDKMLIDPARAGAY-ESMQSLKKLKPKALVYVSCNPASLARDSEVI--------LKQGYQLKKIGLIDMFPQTHHLE 436
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_PSEU2 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rumA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.654e-15 Identity = 54/146 (36.99%), Postives = 74/146 (50.68%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 V+DLFCG G L LA + V E V + A NA N++ N F Q DL++ A V+ DP R G ++++ + K A R++YVSCNPAT ARD L I+ Y+LK +DMFP T H+E + Sbjct: 308 VMDLFCGLGNFALPLAGLARDVVAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQPLTQADWAAEGFSAVLLDPPRDGA-FEVVRQIRKTGARRLLYVSCNPATLARDAVEL--------IRQGYRLKRAGILDMFPQTAHVEAM 444
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_ERWCT (23S rRNA (uracil-5-)-methyltransferase rumA OS=Erwinia carotovora subsp. atroseptica GN=rumA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.654e-15 Identity = 60/183 (32.79%), Postives = 84/183 (45.90%), Query Frame = 2 Query: 320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 GLT S F Q N + + + + A L +LDLFCG G L LA+ V G E V + NA+ N +SN TF +L A D ++ DP R G +++ + +L R+VYVSCN T ARD L + Y+L ++ +DMFPHT H+E Sbjct: 264 GLTLAFSPRDFIQVNDAVNQQM--VAQALAWLDVQSQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWAAQGFDKILLDPARAGA-AGVMEQITRLAPKRVVYVSCNATTLARDSKVL--------LAAGYRLANVAMLDMFPHTGHLE 435 The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 378
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bpback to top |