CX069767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_BURS3 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Burkholderia sp. (strain 383) GN=rumA PE=3 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15 Identity = 58/154 (37.66%), Postives = 77/154 (50.00%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 VLDLFCG G L LAR + V G E + A NA+ N + + TF +L ++ GD A D + DP R G + + K L ++ RIVYVSCNP+T ARD L H G Y+LK V+MFP+T H+E + Sbjct: 314 VLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDIRALGAFDKFLIDPPREGA-LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAG-------YRLKGAGVVNMFPNTSHVESI 459
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_BURCM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rumA PE=3 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15 Identity = 58/154 (37.66%), Postives = 77/154 (50.00%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 VLDLFCG G L LAR + V G E + A NA+ N + + TF +L ++ GD A D + DP R G + + K L ++ RIVYVSCNP+T ARD L H G Y+LK V+MFP+T H+E + Sbjct: 314 VLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDLRALGAFDKFLIDPPREGA-LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAG-------YRLKGAGVVNMFPNTSHVESI 459
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_BURCH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Burkholderia cenocepacia (strain HI2424) GN=rumA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15 Identity = 58/154 (37.66%), Postives = 77/154 (50.00%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 VLDLFCG G L LAR + V G E + A NA+ N + + TF +L ++ GD A D + DP R G + + K L ++ RIVYVSCNP+T ARD L H G Y+LK V+MFP+T H+E + Sbjct: 314 VLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDLRALGAFDKFLIDPPREGA-LAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAG-------YRLKGAGVVNMFPNTSHVESI 459
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_BURCA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Burkholderia cenocepacia (strain AU 1054) GN=rumA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15 Identity = 58/154 (37.66%), Postives = 77/154 (50.00%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 VLDLFCG G L LAR + V G E + A NA+ N + + TF +L ++ GD A D + DP R G + + K L ++ RIVYVSCNP+T ARD L H G Y+LK V+MFP+T H+E + Sbjct: 314 VLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDLRALGAFDKFLIDPPREGA-LAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAG-------YRLKGAGVVNMFPNTSHVESI 459
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y988_THET2 (Uncharacterized RNA methyltransferase TT_C0988 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C0988 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.232e-15 Identity = 59/195 (30.26%), Postives = 92/195 (47.18%), Query Frame = 2 Query: 284 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 L G+ + E L +S SF Q N A L +E+ L G + L+L+ G+G L L+ + V E+ +A+ + K N F++ D K A D+V+ DP R G+ ++ +LL+ + I+YVSC+PAT ARD+ L ++G Y+L +P D FP T H+E Sbjct: 222 LAGERTLLEAFGPLKATVSVESFSQVNPLAAGAL---LEEARTLVFGGRR-ALELYAGSGLFSLLLSPRYEEVVAVEISKEAVRRGEMDRKRLGAENVRFLRMDARK-----AEALGAFDLVVVDPPRAGLPPEVRAYLLRARPREILYVSCDPATWARDVGAL--------VQGGYRLAFARPYDFFPFTHHVE 399
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_PSE14 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rumA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.232e-15 Identity = 54/146 (36.99%), Postives = 73/146 (50.00%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 V+DLFCG G L LA + V E V + A NA N++ N F Q DL++ A V+ DP R G ++++ + K A R++YVSCNPAT ARD L I Y+LK +DMFP T H+E + Sbjct: 308 VMDLFCGLGNFALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHADWAAEGFSTVLLDPPRDGA-FEVVRQIRKTGARRLLYVSCNPATLARDTVEL--------ISQGYRLKRAGILDMFPQTAHVEAM 444
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_ACIF5 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rumA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.232e-15 Identity = 60/175 (34.29%), Postives = 86/175 (49.14%), Query Frame = 2 Query: 359 TNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK--APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 T +QA + A L+ + +LDLFCG G L +AR V G E + ++ A NA N +++ A + DL + + D ++ DP R G I+ L L R+VYVSCNPAT ARD +YL H G Y+L++ V+MFPHT H+E + Sbjct: 272 TQVNQAANQVMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGDARLVALAAENAAANGLADKARYAVADLTQARMEDFAPAGAIDKMLIDPPRSGA----IEVLRSLTPGVRRLVYVSCNPATLARDAEYLVHERG-------YRLRAAGVVNMFPHTAHVESI 435
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_ACIF2 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rumA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.232e-15 Identity = 60/175 (34.29%), Postives = 86/175 (49.14%), Query Frame = 2 Query: 359 TNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK--APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 T +QA + A L+ + +LDLFCG G L +AR V G E + ++ A NA N +++ A + DL + + D ++ DP R G I+ L L R+VYVSCNPAT ARD +YL H G Y+L++ V+MFPHT H+E + Sbjct: 272 TQVNQAANQVMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGDARLVALAAENAAANGLADKARYAVADLTQARMEDFAPAGAIDKMLIDPPRSGA----IEVLRSLTPGVRRLVYVSCNPATLARDAEYLVHERG-------YRLRAAGVVNMFPHTAHVESI 435
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_XANC5 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rumA PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 1.063e-14 Identity = 56/146 (38.36%), Postives = 75/146 (51.37%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 VLDLFCG G L LAR V+ V G E ++ A NA+ N + NA F DL + D ++ DP R G +++++ L RIVYVSC+P + ARD YL V DQ + L +DMFPHT H+E + Sbjct: 301 VLDLFCGLGNFTLPLARVVREVVGVEGDAGLVARAKENAQRNGLDNAQFHAADLTQDQRSAPWMRQGFDKLLLDPPRSGA-LEVLQQLPLKTFDRIVYVSCHPGSLARDAGYL---VNDQG----FTLVCAGAMDMFPHTAHVESI 438
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_THIDA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rumA PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.388e-14 Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP-RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 + DLFCG G L +A V G E + ++ A NA N + +A F +L ++ + A D ++ DP R G ++++K L + AP RIVYVSC+PAT ARD + L H +KG Y+L++ +MFPHT H+E + Sbjct: 289 IADLFCGLGNFTLPIAHRGADVLGIEGSTELVARARENALRNALPHARFEVDNLFEMTPEKFAALGPFDKLLIDPPRSGA-IEVVKSLPEAGAPRRIVYVSCDPATLARDAEVLVH------VKG-YRLEAAGVANMFPHTAHVESI 427 The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 378
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bpback to top |