CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_BURS3 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Burkholderia sp. (strain 383) GN=rumA PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15
Identity = 58/154 (37.66%), Postives = 77/154 (50.00%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            VLDLFCG G   L LAR  + V G E      + A  NA+ N +  + TF   +L ++ GD   A    D  + DP R G  + + K L ++          RIVYVSCNP+T ARD   L H  G       Y+LK    V+MFP+T H+E +
Sbjct:  314 VLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDIRALGAFDKFLIDPPREGA-LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAG-------YRLKGAGVVNMFPNTSHVESI 459          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_BURCM (23S rRNA (uracil-5-)-methyltransferase rumA OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rumA PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15
Identity = 58/154 (37.66%), Postives = 77/154 (50.00%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            VLDLFCG G   L LAR  + V G E      + A  NA+ N +  + TF   +L ++ GD   A    D  + DP R G  + + K L ++          RIVYVSCNP+T ARD   L H  G       Y+LK    V+MFP+T H+E +
Sbjct:  314 VLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDLRALGAFDKFLIDPPREGA-LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAG-------YRLKGAGVVNMFPNTSHVESI 459          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_BURCH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Burkholderia cenocepacia (strain HI2424) GN=rumA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15
Identity = 58/154 (37.66%), Postives = 77/154 (50.00%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            VLDLFCG G   L LAR  + V G E      + A  NA+ N +  + TF   +L ++ GD   A    D  + DP R G  + + K L ++          RIVYVSCNP+T ARD   L H  G       Y+LK    V+MFP+T H+E +
Sbjct:  314 VLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDLRALGAFDKFLIDPPREGA-LAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAG-------YRLKGAGVVNMFPNTSHVESI 459          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_BURCA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Burkholderia cenocepacia (strain AU 1054) GN=rumA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15
Identity = 58/154 (37.66%), Postives = 77/154 (50.00%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            VLDLFCG G   L LAR  + V G E      + A  NA+ N +  + TF   +L ++ GD   A    D  + DP R G  + + K L ++          RIVYVSCNP+T ARD   L H  G       Y+LK    V+MFP+T H+E +
Sbjct:  314 VLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDLRALGAFDKFLIDPPREGA-LAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAG-------YRLKGAGVVNMFPNTSHVESI 459          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y988_THET2 (Uncharacterized RNA methyltransferase TT_C0988 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C0988 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.232e-15
Identity = 59/195 (30.26%), Postives = 92/195 (47.18%), Query Frame = 2
Query:  284 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            L G+  + E    L   +S  SF Q N   A  L   +E+   L   G +  L+L+ G+G   L L+   + V   E+  +A+     + K     N  F++ D  K       A    D+V+ DP R G+  ++  +LL+ +   I+YVSC+PAT ARD+  L        ++G Y+L   +P D FP T H+E
Sbjct:  222 LAGERTLLEAFGPLKATVSVESFSQVNPLAAGAL---LEEARTLVFGGRR-ALELYAGSGLFSLLLSPRYEEVVAVEISKEAVRRGEMDRKRLGAENVRFLRMDARK-----AEALGAFDLVVVDPPRAGLPPEVRAYLLRARPREILYVSCDPATWARDVGAL--------VQGGYRLAFARPYDFFPFTHHVE 399          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_PSE14 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rumA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.232e-15
Identity = 54/146 (36.99%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            V+DLFCG G   L LA   + V   E V   +  A  NA  N++ N  F Q DL++       A      V+ DP R G   ++++ + K  A R++YVSCNPAT ARD   L        I   Y+LK    +DMFP T H+E +
Sbjct:  308 VMDLFCGLGNFALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHADWAAEGFSTVLLDPPRDGA-FEVVRQIRKTGARRLLYVSCNPATLARDTVEL--------ISQGYRLKRAGILDMFPQTAHVEAM 444          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_ACIF5 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rumA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.232e-15
Identity = 60/175 (34.29%), Postives = 86/175 (49.14%), Query Frame = 2
Query:  359 TNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK--APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            T  +QA     +    A L+    + +LDLFCG G   L +AR    V G E   + ++ A  NA  N +++ A +   DL +   +        D ++ DP R G     I+ L  L     R+VYVSCNPAT ARD +YL H  G       Y+L++   V+MFPHT H+E +
Sbjct:  272 TQVNQAANQVMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGDARLVALAAENAAANGLADKARYAVADLTQARMEDFAPAGAIDKMLIDPPRSGA----IEVLRSLTPGVRRLVYVSCNPATLARDAEYLVHERG-------YRLRAAGVVNMFPHTAHVESI 435          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_ACIF2 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rumA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.232e-15
Identity = 60/175 (34.29%), Postives = 86/175 (49.14%), Query Frame = 2
Query:  359 TNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK--APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            T  +QA     +    A L+    + +LDLFCG G   L +AR    V G E   + ++ A  NA  N +++ A +   DL +   +        D ++ DP R G     I+ L  L     R+VYVSCNPAT ARD +YL H  G       Y+L++   V+MFPHT H+E +
Sbjct:  272 TQVNQAANQVMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGDARLVALAAENAAANGLADKARYAVADLTQARMEDFAPAGAIDKMLIDPPRSGA----IEVLRSLTPGVRRLVYVSCNPATLARDAEYLVHERG-------YRLRAAGVVNMFPHTAHVESI 435          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_XANC5 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rumA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.063e-14
Identity = 56/146 (38.36%), Postives = 75/146 (51.37%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            VLDLFCG G   L LAR V+ V G E     ++ A  NA+ N + NA F   DL +            D ++ DP R G  +++++ L      RIVYVSC+P + ARD  YL   V DQ     + L     +DMFPHT H+E +
Sbjct:  301 VLDLFCGLGNFTLPLARVVREVVGVEGDAGLVARAKENAQRNGLDNAQFHAADLTQDQRSAPWMRQGFDKLLLDPPRSGA-LEVLQQLPLKTFDRIVYVSCHPGSLARDAGYL---VNDQG----FTLVCAGAMDMFPHTAHVESI 438          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_THIDA (23S rRNA (uracil-5-)-methyltransferase rumA OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rumA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.388e-14
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP-RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            + DLFCG G   L +A     V G E   + ++ A  NA  N + +A F   +L ++  +   A    D ++ DP R G  ++++K L +  AP RIVYVSC+PAT ARD + L H      +KG Y+L++    +MFPHT H+E +
Sbjct:  289 IADLFCGLGNFTLPIAHRGADVLGIEGSTELVARARENALRNALPHARFEVDNLFEMTPEKFAALGPFDKLLIDPPRSGA-IEVVKSLPEAGAPRRIVYVSCDPATLARDAEVLVH------VKG-YRLEAAGVANMFPHTAHVESI 427          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
RUMA_BURS34.772e-1537.6623S rRNA (uracil-5-)-methyltransferase rumA OS=Bur... [more]
RUMA_BURCM4.772e-1537.6623S rRNA (uracil-5-)-methyltransferase rumA OS=Bur... [more]
RUMA_BURCH4.772e-1537.6623S rRNA (uracil-5-)-methyltransferase rumA OS=Bur... [more]
RUMA_BURCA4.772e-1537.6623S rRNA (uracil-5-)-methyltransferase rumA OS=Bur... [more]
Y988_THET26.232e-1530.26Uncharacterized RNA methyltransferase TT_C0988 OS=... [more]
RUMA_PSE146.232e-1536.9923S rRNA (uracil-5-)-methyltransferase rumA OS=Pse... [more]
RUMA_ACIF56.232e-1534.2923S rRNA (uracil-5-)-methyltransferase rumA OS=Aci... [more]
RUMA_ACIF26.232e-1534.2923S rRNA (uracil-5-)-methyltransferase rumA OS=Aci... [more]
RUMA_XANC51.063e-1438.3623S rRNA (uracil-5-)-methyltransferase rumA OS=Xan... [more]
RUMA_THIDA1.388e-1436.7323S rRNA (uracil-5-)-methyltransferase rumA OS=Thi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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