CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_CHRVO (23S rRNA (uracil-5-)-methyltransferase rumA OS=Chromobacterium violaceum GN=rumA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.388e-14
Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP-RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            + D+FCG G   L +AR    V+G E     +  A  NA  N + +  ++   +L  +  +   A  K D ++ DP R G  ++L+K + +  AP RIVYVSCNP+T ARD   L H  G       Y LK+   ++MFPHT H+E V
Sbjct:  297 IADMFCGIGNFTLPIARSGAVVHGMEGSQPLVRRAVENATHNGLQDKVSYEMANLFDVTEESFAALGKFDKMLVDPPRDGA-VQLLKAITEETAPQRIVYVSCNPSTLARDAGVLVHTKG-------YTLKAAGIINMFPHTAHVESV 436          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y827_PYRFU (Uncharacterized RNA methyltransferase PF0827 OS=Pyrococcus furiosus GN=PF0827 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 67/198 (33.84%), Postives = 98/198 (49.49%), Query Frame = 2
Query:  293 KSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV--QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPR-IVYVSCNPATCARDL-DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            K  I+E + G+ + +    FFQTN++   +L K +E       DGSK VLDL+ G GT  L L +   +V G E+   A+  A  +A+LN++ N  F   + +   I G         D +I DP R G+       +++ K P  +VYVSCNP     D  +YL            YK++    +DMFPHTPH+E V
Sbjct:  230 KEFISEKIFGIKYLLRPGIFFQTNSYALPLLLKAVEGFL----DGSK-VLDLYSGIGTFSLYLTKKGFNVVGVEINKTAVEVAKLSAELNSL-NVEFKAKRAEEENIEGY--------DALILDPPRKGLGE--FAGVVEKKGPENVVYVSCNPKRFILDFKNYLSRS---------YKVEDAILIDMFPHTPHVEAV 402          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_FRATT (23S rRNA (uracil-5-)-methyltransferase rumA OS=Francisella tularensis subsp. tularensis GN=rumA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 62/187 (33.16%), Postives = 88/187 (47.06%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            G+      N F Q N    + + K   +   +  + S  ++DLFCG G   L +++  K V G E  P  +  A   A  NNI+N  F   +L +   D  + N F    +++ DP R G   ++   + K    RIVYVSC+ A  ARD   L       N KG YKL S   +DMFPHT H+E +
Sbjct:  268 GIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDS--IIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLL-DPPRAGA-QEVCNNIEKFNVKRIVYVSCDTAALARDAGILV------NTKG-YKLISAGVMDMFPHTMHVESI 443          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_FRATO (23S rRNA (uracil-5-)-methyltransferase rumA OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rumA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 62/187 (33.16%), Postives = 88/187 (47.06%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            G+      N F Q N    + + K   +   +  + S  ++DLFCG G   L +++  K V G E  P  +  A   A  NNI+N  F   +L +   D  + N F    +++ DP R G   ++   + K    RIVYVSC+ A  ARD   L       N KG YKL S   +DMFPHT H+E +
Sbjct:  268 GIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDS--IIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLL-DPPRAGA-QEVCNNIEKFNVKRIVYVSCDTAALARDAGILV------NTKG-YKLISAGVMDMFPHTMHVESI 443          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_FRATH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rumA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 62/187 (33.16%), Postives = 88/187 (47.06%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            G+      N F Q N    + + K   +   +  + S  ++DLFCG G   L +++  K V G E  P  +  A   A  NNI+N  F   +L +   D  + N F    +++ DP R G   ++   + K    RIVYVSC+ A  ARD   L       N KG YKL S   +DMFPHT H+E +
Sbjct:  268 GIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDS--IIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLL-DPPRAGA-QEVCNNIEKFNVKRIVYVSCDTAALARDAGILV------NTKG-YKLISAGVMDMFPHTMHVESI 443          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_FRAT1 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rumA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 62/187 (33.16%), Postives = 88/187 (47.06%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            G+      N F Q N    + + K   +   +  + S  ++DLFCG G   L +++  K V G E  P  +  A   A  NNI+N  F   +L +   D  + N F    +++ DP R G   ++   + K    RIVYVSC+ A  ARD   L       N KG YKL S   +DMFPHT H+E +
Sbjct:  268 GIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDS--IIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLL-DPPRAGA-QEVCNNIEKFNVKRIVYVSCDTAALARDAGILV------NTKG-YKLISAGVMDMFPHTMHVESI 443          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: C3H24_ARATH (Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana GN=At2g28450 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  269 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 586
            E+   +  ++ I + +  L F IS  +FFQ NT  AE LY +  D A L  D   ++ D+ CGTGTIGLTLA  V  V G E+   A++DA RNA +N ISN  F+
Sbjct:  507 EQTTNVLTEARIHDHINNLRFSISPTAFFQVNTVTAEKLYSIAGDWADLGPD--TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFI 610          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_RALPJ (23S rRNA (uracil-5-)-methyltransferase rumA OS=Ralstonia pickettii (strain 12J) GN=rumA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14
Identity = 67/198 (33.84%), Postives = 87/198 (43.94%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLY----KLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP----------RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            G+T       F Q N     VL     KL++   G R      +LDLFCG G   L +A   + V G E      + A  NA+ N +   T F   +L ++  D   A  K D  + DP R G  + + K L +L             RI+YVSCNPAT ARD   L H  G       Y+L     V+MFPHT H+E
Sbjct:  259 GITMPFKPTDFTQVNHQINRVLMSRALKLLDAQPGDR------LLDLFCGIGNFTLPMATRAREVMGIEGSEALTTRALANAQHNGLHTKTSFACRNLFEVSADDVAALGKFDRWLIDPPREGA-LAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLARDAGLLVHEAG-------YRLAGAGVVNMFPHTSHVE 442          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_FRATN (23S rRNA (uracil-5-)-methyltransferase rumA OS=Francisella tularensis subsp. novicida (strain U112) GN=rumA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14
Identity = 60/187 (32.09%), Postives = 87/187 (46.52%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            G+      N F Q N    + + K   +   +  + S  ++DLFCG G   L +++  K V G E  P  +  A   A  NNI+N  F   +L +   D  + N F    +++ DP R G   ++   + K    RIVYVSC+ AT ARD   L +          YKL S   +DMFPHT H+E +
Sbjct:  268 GIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDS--IIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLL-DPPRAGA-QEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNNKD-------YKLISAGVMDMFPHTMHVESI 443          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_BURXL (23S rRNA (uracil-5-)-methyltransferase rumA OS=Burkholderia xenovorans (strain LB400) GN=rumA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14
Identity = 60/154 (38.96%), Postives = 74/154 (48.05%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            VLDLFCG G   L LAR  K V G E      S A  NA LN ++  T F   +L ++  D   A    D  + DP R G  + + K L ++          RIVYVSC PAT ARD   L H  G       Y+L     V+MFPHT H+E +
Sbjct:  321 VLDLFCGIGNFTLPLARISKEVMGIEGSEVLTSRALANAGLNGVAGHTSFECRNLFEVTADDLRALGHFDKFLIDPPREGA-LAVAKALAEIARSGNGPLPKRIVYVSCAPATLARDAGLLVHEAG-------YRLVGAGVVNMFPHTSHVESI 466          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
RUMA_CHRVO1.388e-1436.4923S rRNA (uracil-5-)-methyltransferase rumA OS=Chr... [more]
Y827_PYRFU1.813e-1433.84Uncharacterized RNA methyltransferase PF0827 OS=Py... [more]
RUMA_FRATT1.813e-1433.1623S rRNA (uracil-5-)-methyltransferase rumA OS=Fra... [more]
RUMA_FRATO1.813e-1433.1623S rRNA (uracil-5-)-methyltransferase rumA OS=Fra... [more]
RUMA_FRATH1.813e-1433.1623S rRNA (uracil-5-)-methyltransferase rumA OS=Fra... [more]
RUMA_FRAT11.813e-1433.1623S rRNA (uracil-5-)-methyltransferase rumA OS=Fra... [more]
C3H24_ARATH1.813e-1443.40Zinc finger CCCH domain-containing protein 24 OS=A... [more]
RUMA_RALPJ3.093e-1433.8423S rRNA (uracil-5-)-methyltransferase rumA OS=Ral... [more]
RUMA_FRATN3.093e-1432.0923S rRNA (uracil-5-)-methyltransferase rumA OS=Fra... [more]
RUMA_BURXL3.093e-1438.9623S rRNA (uracil-5-)-methyltransferase rumA OS=Bur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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