CX069767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_CHRVO (23S rRNA (uracil-5-)-methyltransferase rumA OS=Chromobacterium violaceum GN=rumA PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.388e-14 Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP-RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 + D+FCG G L +AR V+G E + A NA N + + ++ +L + + A K D ++ DP R G ++L+K + + AP RIVYVSCNP+T ARD L H G Y LK+ ++MFPHT H+E V Sbjct: 297 IADMFCGIGNFTLPIARSGAVVHGMEGSQPLVRRAVENATHNGLQDKVSYEMANLFDVTEESFAALGKFDKMLVDPPRDGA-VQLLKAITEETAPQRIVYVSCNPSTLARDAGVLVHTKG-------YTLKAAGIINMFPHTAHVESV 436
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y827_PYRFU (Uncharacterized RNA methyltransferase PF0827 OS=Pyrococcus furiosus GN=PF0827 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14 Identity = 67/198 (33.84%), Postives = 98/198 (49.49%), Query Frame = 2 Query: 293 KSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV--QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPR-IVYVSCNPATCARDL-DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 K I+E + G+ + + FFQTN++ +L K +E DGSK VLDL+ G GT L L + +V G E+ A+ A +A+LN++ N F + + I G D +I DP R G+ +++ K P +VYVSCNP D +YL YK++ +DMFPHTPH+E V Sbjct: 230 KEFISEKIFGIKYLLRPGIFFQTNSYALPLLLKAVEGFL----DGSK-VLDLYSGIGTFSLYLTKKGFNVVGVEINKTAVEVAKLSAELNSL-NVEFKAKRAEEENIEGY--------DALILDPPRKGLGE--FAGVVEKKGPENVVYVSCNPKRFILDFKNYLSRS---------YKVEDAILIDMFPHTPHVEAV 402
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_FRATT (23S rRNA (uracil-5-)-methyltransferase rumA OS=Francisella tularensis subsp. tularensis GN=rumA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14 Identity = 62/187 (33.16%), Postives = 88/187 (47.06%), Query Frame = 2 Query: 320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 G+ N F Q N + + K + + + S ++DLFCG G L +++ K V G E P + A A NNI+N F +L + D + N F +++ DP R G ++ + K RIVYVSC+ A ARD L N KG YKL S +DMFPHT H+E + Sbjct: 268 GIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDS--IIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLL-DPPRAGA-QEVCNNIEKFNVKRIVYVSCDTAALARDAGILV------NTKG-YKLISAGVMDMFPHTMHVESI 443
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_FRATO (23S rRNA (uracil-5-)-methyltransferase rumA OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rumA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14 Identity = 62/187 (33.16%), Postives = 88/187 (47.06%), Query Frame = 2 Query: 320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 G+ N F Q N + + K + + + S ++DLFCG G L +++ K V G E P + A A NNI+N F +L + D + N F +++ DP R G ++ + K RIVYVSC+ A ARD L N KG YKL S +DMFPHT H+E + Sbjct: 268 GIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDS--IIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLL-DPPRAGA-QEVCNNIEKFNVKRIVYVSCDTAALARDAGILV------NTKG-YKLISAGVMDMFPHTMHVESI 443
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_FRATH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rumA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14 Identity = 62/187 (33.16%), Postives = 88/187 (47.06%), Query Frame = 2 Query: 320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 G+ N F Q N + + K + + + S ++DLFCG G L +++ K V G E P + A A NNI+N F +L + D + N F +++ DP R G ++ + K RIVYVSC+ A ARD L N KG YKL S +DMFPHT H+E + Sbjct: 268 GIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDS--IIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLL-DPPRAGA-QEVCNNIEKFNVKRIVYVSCDTAALARDAGILV------NTKG-YKLISAGVMDMFPHTMHVESI 443
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_FRAT1 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rumA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14 Identity = 62/187 (33.16%), Postives = 88/187 (47.06%), Query Frame = 2 Query: 320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 G+ N F Q N + + K + + + S ++DLFCG G L +++ K V G E P + A A NNI+N F +L + D + N F +++ DP R G ++ + K RIVYVSC+ A ARD L N KG YKL S +DMFPHT H+E + Sbjct: 268 GIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDS--IIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLL-DPPRAGA-QEVCNNIEKFNVKRIVYVSCDTAALARDAGILV------NTKG-YKLISAGVMDMFPHTMHVESI 443
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: C3H24_ARATH (Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana GN=At2g28450 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14 Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 2 Query: 269 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 586 E+ + ++ I + + L F IS +FFQ NT AE LY + D A L D ++ D+ CGTGTIGLTLA V V G E+ A++DA RNA +N ISN F+ Sbjct: 507 EQTTNVLTEARIHDHINNLRFSISPTAFFQVNTVTAEKLYSIAGDWADLGPD--TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFI 610
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_RALPJ (23S rRNA (uracil-5-)-methyltransferase rumA OS=Ralstonia pickettii (strain 12J) GN=rumA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14 Identity = 67/198 (33.84%), Postives = 87/198 (43.94%), Query Frame = 2 Query: 320 GLTFQISANSFFQTNTHQAEVLY----KLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP----------RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 G+T F Q N VL KL++ G R +LDLFCG G L +A + V G E + A NA+ N + T F +L ++ D A K D + DP R G + + K L +L RI+YVSCNPAT ARD L H G Y+L V+MFPHT H+E Sbjct: 259 GITMPFKPTDFTQVNHQINRVLMSRALKLLDAQPGDR------LLDLFCGIGNFTLPMATRAREVMGIEGSEALTTRALANAQHNGLHTKTSFACRNLFEVSADDVAALGKFDRWLIDPPREGA-LAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLARDAGLLVHEAG-------YRLAGAGVVNMFPHTSHVE 442
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_FRATN (23S rRNA (uracil-5-)-methyltransferase rumA OS=Francisella tularensis subsp. novicida (strain U112) GN=rumA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14 Identity = 60/187 (32.09%), Postives = 87/187 (46.52%), Query Frame = 2 Query: 320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 G+ N F Q N + + K + + + S ++DLFCG G L +++ K V G E P + A A NNI+N F +L + D + N F +++ DP R G ++ + K RIVYVSC+ AT ARD L + YKL S +DMFPHT H+E + Sbjct: 268 GIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDS--IIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLL-DPPRAGA-QEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNNKD-------YKLISAGVMDMFPHTMHVESI 443
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_BURXL (23S rRNA (uracil-5-)-methyltransferase rumA OS=Burkholderia xenovorans (strain LB400) GN=rumA PE=3 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14 Identity = 60/154 (38.96%), Postives = 74/154 (48.05%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK-------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 VLDLFCG G L LAR K V G E S A NA LN ++ T F +L ++ D A D + DP R G + + K L ++ RIVYVSC PAT ARD L H G Y+L V+MFPHT H+E + Sbjct: 321 VLDLFCGIGNFTLPLARISKEVMGIEGSEVLTSRALANAGLNGVAGHTSFECRNLFEVTADDLRALGHFDKFLIDPPREGA-LAVAKALAEIARSGNGPLPKRIVYVSCAPATLARDAGLLVHEAG-------YRLVGAGVVNMFPHTSHVESI 466 The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 378
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bpback to top |