CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_METFK (23S rRNA (uracil-5-)-methyltransferase rumA OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rumA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14
Identity = 60/194 (30.93%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  323 LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK---------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            LT+      F Q N +   V+ +       L+    + + D FCG G   L +AR    V+G E     ++ A  +A LN+++    F + DL K+      +  + D  + DP R G  ++L+K L  ++           RIVYVSCNPAT ARD   L H  G       Y+L +   ++MFPHT H+E +
Sbjct:  254 LTYPFKPTEFTQVNPYINRVMLRRAMQL--LQPQPGERIADFFCGLGNFTLPIARSGASVFGMEGSAALVARANESAALNSLAGQVEFQEADLFKMTPALLQSLGRFDKWLIDPPRDGA-IELVKALPDIEDADADTSHVPQRIVYVSCNPATLARDAGILVHTKG-------YRLLASGVINMFPHTSHVESI 437          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_AZOSE (23S rRNA (uracil-5-)-methyltransferase rumA OS=Azoarcus sp. (strain EbN1) GN=rumA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.276e-14
Identity = 54/148 (36.49%), Postives = 75/148 (50.68%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP-RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            + DLFCG G   L +AR    V G E     +  A +NA+ N +   + F   +L +   D   A  + D ++ DP R G  + ++K L  L++P RIVYVSCNPAT ARD   L H  G       Y L+     +MFP T H+E +
Sbjct:  288 IADLFCGLGNFSLPIARCGATVVGVEGSESLVRRAAKNARRNGLHGRSEFHAANLFEATEDSLAALGRLDKLLIDPPREGA-IAVVKALSTLQSPARIVYVSCNPATLARDAAVLVHEKG-------YVLRGAGIANMFPQTSHVESI 427          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_CAMHC (tRNA (uracil-5-)-methyltransferase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=trmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13
Identity = 56/207 (27.05%), Postives = 94/207 (45.41%), Query Frame = 2
Query:  287 YGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG-----NAFPKPDI-------VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            +G   + E ++   ++ +A++FFQ+NT   E +   + +         K +L+++CG G   L LA     +   E+   +I +A  N+K  N  N  FV+    ++   F      N     DI       V+ DP R G+  +++ F+   K   I+Y+SCNPA+  ++L  LC           +K+      D F HT HIEC
Sbjct:  162 FGGEILREKVQNFIYRFNADAFFQSNTKVNEKMILFVLNAV----KNGKDLLEMYCGHGNFTLPLASEFGKILANEISKNSIKNARENSK--NKDNINFVRMSAKELIDAFNGVREFNRLKDIDITDFDFSHVLVDPPRAGIEPEVLDFIQNFK--NIIYISCNPASLKQNLQILCE---------THKITKFALFDQFVHTEHIEC 351          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y1394_BIFLO (Uncharacterized RNA methyltransferase BL1394 OS=Bifidobacterium longum GN=BL1394 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.535e-13
Identity = 57/204 (27.94%), Postives = 96/204 (47.06%), Query Frame = 2
Query:  290 GKSNITE--TLRGLTF--QISANSFFQTNTHQAEVLYKLIEDCAG--LRGDGSKIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            G   +TE  T+ G TF  Q+ AN F+Q +      L   + +     L+     ++ DL+ G+G   L LA        +   E    A+ +A RN +  N+++     GD+++          KP++V+ DP R G   K+ + +    A  +VY++C+P + ARD   L  G G       Y+LK ++  D++P T H+E V
Sbjct:  235 GSQLLTEQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDVSRTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLI-GEG-------YELKDIRAFDIYPMTHHVETV 430          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_PECCP (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rumA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.535e-13
Identity = 58/183 (31.69%), Postives = 82/183 (44.81%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GLT   S   F Q N    + +  + +  A L       +LDLFCG G   L LA+    V G E V   +     NA+ N +SN TF   +L              D ++ DP R G    +++ + +L   R+VYVSCN  T ARD   L        +   + L ++  +DMFPHT H+E
Sbjct:  264 GLTLAFSPRDFIQVNDAVNQQM--VAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWVAQGFDKILLDPARAGA-AGVMEQITRLAPKRVVYVSCNATTLARDSKVL--------LAAGFTLVNVAMLDMFPHTGHLE 435          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_AZOSB (23S rRNA (uracil-5-)-methyltransferase rumA OS=Azoarcus sp. (strain BH72) GN=rumA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.005e-13
Identity = 62/184 (33.70%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  341 ANSFFQTNTHQAEVLYK----LIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP-RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            A  F Q N H   +L +    L++   G R      + DLFCG G   L +AR    V G E     ++ A  NA+ N + + T F   +L     D   A    D ++ DP R G  + ++K +   + P RIVYVSCNPAT ARD   L H  G       Y L+     +MFP T H+E +
Sbjct:  258 ATDFTQVNVHINRLLIRRAMQLLQPAPGER------IADLFCGLGNFSLPIARRGATVVGVEGSEALVARALENARRNGLDSRTEFHAANLFDATEDSLAALGPLDKLLIDPPREGA-IAVVKAVGPAQQPARIVYVSCNPATLARDAAVLVHEKG-------YVLRGAGIANMFPQTSHVESI 427          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y086_LEPIC (Uncharacterized RNA methyltransferase LIC_10086 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=LIC_10086 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 56/188 (29.79%), Postives = 84/188 (44.68%), Query Frame = 2
Query:  314 LRGLTFQISANSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            L+ + ++I A  F Q N +  A  L K+ E    L  +    +L+L+CG+G I + L        GYE+    +  A RN  LN IS+  F   +L     D           I +P R G+  K+++ L+K      +Y SCN +T  RDL           +   YKL ++  VD FP T H E +
Sbjct:  234 LKKIVWEIPAGGFSQVNRYLIAPWLEKIFE----LVPNNQNRILELYCGSGLIAIALKSKTTSWLGYEISSDCVQQAKRNVLLNGISSCDFKTLNLETDWIDSEEVL-NSSFWIMNPPRAGLSKKVLQTLIKTSPNGFLYSSCNHSTLVRDLSLF--------LNKDYKLSNVTLVDFFPRTKHFEVI 408          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERPY (tRNA (uracil-5-)-methyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=trmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N      +L   ++   G  GD    +L+L+CG G   L LAR  + V   E+   +++ A  N   NNI N   +           QG  + N++ G D G+     + +  DP R G+  + +K  L    PRI+Y+SCNP T   +L+ L H          +K+  L   D FP+T H+EC
Sbjct:  177 REMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSY--NCETIFVDPPRSGLDHETVK--LVQAYPRILYISCNPETLCANLEQLQH---------THKISRLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERPS (tRNA (uracil-5-)-methyltransferase OS=Yersinia pseudotuberculosis GN=trmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N      +L   ++   G  GD    +L+L+CG G   L LAR  + V   E+   +++ A  N   NNI N   +           QG  + N++ G D G+     + +  DP R G+  + +K  L    PRI+Y+SCNP T   +L+ L H          +K+  L   D FP+T H+EC
Sbjct:  177 REMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSY--NCETIFVDPPRSGLDHETVK--LVQAYPRILYISCNPETLCANLEQLQH---------THKISRLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERPP (tRNA (uracil-5-)-methyltransferase OS=Yersinia pestis (strain Pestoides F) GN=trmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N      +L   ++   G  GD    +L+L+CG G   L LAR  + V   E+   +++ A  N   NNI N   +           QG  + N++ G D G+     + +  DP R G+  + +K  L    PRI+Y+SCNP T   +L+ L H          +K+  L   D FP+T H+EC
Sbjct:  177 REMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSY--NCETIFVDPPRSGLDHETVK--LVQAYPRILYISCNPETLCANLEQLQH---------THKISRLALFDQFPYTHHMEC 359          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
RUMA_METFK4.040e-1430.9323S rRNA (uracil-5-)-methyltransferase rumA OS=Met... [more]
RUMA_AZOSE5.276e-1436.4923S rRNA (uracil-5-)-methyltransferase rumA OS=Azo... [more]
TRMA_CAMHC1.175e-1327.05tRNA (uracil-5-)-methyltransferase OS=Campylobacte... [more]
Y1394_BIFLO1.535e-1327.94Uncharacterized RNA methyltransferase BL1394 OS=Bi... [more]
RUMA_PECCP1.535e-1331.6923S rRNA (uracil-5-)-methyltransferase rumA OS=Pec... [more]
RUMA_AZOSB2.005e-1333.7023S rRNA (uracil-5-)-methyltransferase rumA OS=Azo... [more]
Y086_LEPIC2.618e-1329.79Uncharacterized RNA methyltransferase LIC_10086 OS... [more]
TRMA_YERPY2.618e-1330.00tRNA (uracil-5-)-methyltransferase OS=Yersinia pse... [more]
TRMA_YERPS2.618e-1330.00tRNA (uracil-5-)-methyltransferase OS=Yersinia pse... [more]
TRMA_YERPP2.618e-1330.00tRNA (uracil-5-)-methyltransferase OS=Yersinia pes... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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