CX069767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_METFK (23S rRNA (uracil-5-)-methyltransferase rumA OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rumA PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14 Identity = 60/194 (30.93%), Postives = 91/194 (46.91%), Query Frame = 2 Query: 323 LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK---------APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 LT+ F Q N + V+ + L+ + + D FCG G L +AR V+G E ++ A +A LN+++ F + DL K+ + + D + DP R G ++L+K L ++ RIVYVSCNPAT ARD L H G Y+L + ++MFPHT H+E + Sbjct: 254 LTYPFKPTEFTQVNPYINRVMLRRAMQL--LQPQPGERIADFFCGLGNFTLPIARSGASVFGMEGSAALVARANESAALNSLAGQVEFQEADLFKMTPALLQSLGRFDKWLIDPPRDGA-IELVKALPDIEDADADTSHVPQRIVYVSCNPATLARDAGILVHTKG-------YRLLASGVINMFPHTSHVESI 437
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_AZOSE (23S rRNA (uracil-5-)-methyltransferase rumA OS=Azoarcus sp. (strain EbN1) GN=rumA PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.276e-14 Identity = 54/148 (36.49%), Postives = 75/148 (50.68%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP-RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 + DLFCG G L +AR V G E + A +NA+ N + + F +L + D A + D ++ DP R G + ++K L L++P RIVYVSCNPAT ARD L H G Y L+ +MFP T H+E + Sbjct: 288 IADLFCGLGNFSLPIARCGATVVGVEGSESLVRRAAKNARRNGLHGRSEFHAANLFEATEDSLAALGRLDKLLIDPPREGA-IAVVKALSTLQSPARIVYVSCNPATLARDAAVLVHEKG-------YVLRGAGIANMFPQTSHVESI 427
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_CAMHC (tRNA (uracil-5-)-methyltransferase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=trmA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13 Identity = 56/207 (27.05%), Postives = 94/207 (45.41%), Query Frame = 2 Query: 287 YGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG-----NAFPKPDI-------VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 +G + E ++ ++ +A++FFQ+NT E + + + K +L+++CG G L LA + E+ +I +A N+K N N FV+ ++ F N DI V+ DP R G+ +++ F+ K I+Y+SCNPA+ ++L LC +K+ D F HT HIEC Sbjct: 162 FGGEILREKVQNFIYRFNADAFFQSNTKVNEKMILFVLNAV----KNGKDLLEMYCGHGNFTLPLASEFGKILANEISKNSIKNARENSK--NKDNINFVRMSAKELIDAFNGVREFNRLKDIDITDFDFSHVLVDPPRAGIEPEVLDFIQNFK--NIIYISCNPASLKQNLQILCE---------THKITKFALFDQFVHTEHIEC 351
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y1394_BIFLO (Uncharacterized RNA methyltransferase BL1394 OS=Bifidobacterium longum GN=BL1394 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.535e-13 Identity = 57/204 (27.94%), Postives = 96/204 (47.06%), Query Frame = 2 Query: 290 GKSNITE--TLRGLTF--QISANSFFQTNTHQAEVLYKLIEDCAG--LRGDGSKIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 G +TE T+ G TF Q+ AN F+Q + L + + L+ ++ DL+ G+G L LA + E A+ +A RN + N+++ GD+++ KP++V+ DP R G K+ + + A +VY++C+P + ARD L G G Y+LK ++ D++P T H+E V Sbjct: 235 GSQLLTEQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDVSRTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLI-GEG-------YELKDIRAFDIYPMTHHVETV 430
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_PECCP (23S rRNA (uracil-5-)-methyltransferase rumA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rumA PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.535e-13 Identity = 58/183 (31.69%), Postives = 82/183 (44.81%), Query Frame = 2 Query: 320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 GLT S F Q N + + + + A L +LDLFCG G L LA+ V G E V + NA+ N +SN TF +L D ++ DP R G +++ + +L R+VYVSCN T ARD L + + L ++ +DMFPHT H+E Sbjct: 264 GLTLAFSPRDFIQVNDAVNQQM--VAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWVAQGFDKILLDPARAGA-AGVMEQITRLAPKRVVYVSCNATTLARDSKVL--------LAAGFTLVNVAMLDMFPHTGHLE 435
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_AZOSB (23S rRNA (uracil-5-)-methyltransferase rumA OS=Azoarcus sp. (strain BH72) GN=rumA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.005e-13 Identity = 62/184 (33.70%), Postives = 85/184 (46.20%), Query Frame = 2 Query: 341 ANSFFQTNTHQAEVLYK----LIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP-RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 A F Q N H +L + L++ G R + DLFCG G L +AR V G E ++ A NA+ N + + T F +L D A D ++ DP R G + ++K + + P RIVYVSCNPAT ARD L H G Y L+ +MFP T H+E + Sbjct: 258 ATDFTQVNVHINRLLIRRAMQLLQPAPGER------IADLFCGLGNFSLPIARRGATVVGVEGSEALVARALENARRNGLDSRTEFHAANLFDATEDSLAALGPLDKLLIDPPREGA-IAVVKAVGPAQQPARIVYVSCNPATLARDAAVLVHEKG-------YVLRGAGIANMFPQTSHVESI 427
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y086_LEPIC (Uncharacterized RNA methyltransferase LIC_10086 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=LIC_10086 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13 Identity = 56/188 (29.79%), Postives = 84/188 (44.68%), Query Frame = 2 Query: 314 LRGLTFQISANSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 L+ + ++I A F Q N + A L K+ E L + +L+L+CG+G I + L GYE+ + A RN LN IS+ F +L D I +P R G+ K+++ L+K +Y SCN +T RDL + YKL ++ VD FP T H E + Sbjct: 234 LKKIVWEIPAGGFSQVNRYLIAPWLEKIFE----LVPNNQNRILELYCGSGLIAIALKSKTTSWLGYEISSDCVQQAKRNVLLNGISSCDFKTLNLETDWIDSEEVL-NSSFWIMNPPRAGLSKKVLQTLIKTSPNGFLYSSCNHSTLVRDLSLF--------LNKDYKLSNVTLVDFFPRTKHFEVI 408
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERPY (tRNA (uracil-5-)-methyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=trmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13 Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 2 Query: 317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 R + ++ NSF Q N +L ++ G GD +L+L+CG G L LAR + V E+ +++ A N NNI N + QG + N++ G D G+ + + DP R G+ + +K L PRI+Y+SCNP T +L+ L H +K+ L D FP+T H+EC Sbjct: 177 REMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSY--NCETIFVDPPRSGLDHETVK--LVQAYPRILYISCNPETLCANLEQLQH---------THKISRLALFDQFPYTHHMEC 359
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERPS (tRNA (uracil-5-)-methyltransferase OS=Yersinia pseudotuberculosis GN=trmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13 Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 2 Query: 317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 R + ++ NSF Q N +L ++ G GD +L+L+CG G L LAR + V E+ +++ A N NNI N + QG + N++ G D G+ + + DP R G+ + +K L PRI+Y+SCNP T +L+ L H +K+ L D FP+T H+EC Sbjct: 177 REMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSY--NCETIFVDPPRSGLDHETVK--LVQAYPRILYISCNPETLCANLEQLQH---------THKISRLALFDQFPYTHHMEC 359
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERPP (tRNA (uracil-5-)-methyltransferase OS=Yersinia pestis (strain Pestoides F) GN=trmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13 Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 2 Query: 317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 R + ++ NSF Q N +L ++ G GD +L+L+CG G L LAR + V E+ +++ A N NNI N + QG + N++ G D G+ + + DP R G+ + +K L PRI+Y+SCNP T +L+ L H +K+ L D FP+T H+EC Sbjct: 177 REMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSY--NCETIFVDPPRSGLDHETVK--LVQAYPRILYISCNPETLCANLEQLQH---------THKISRLALFDQFPYTHHMEC 359 The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 378
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bpback to top |