CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERPN (tRNA (uracil-5-)-methyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=trmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N      +L   ++   G  GD    +L+L+CG G   L LAR  + V   E+   +++ A  N   NNI N   +           QG  + N++ G D G+     + +  DP R G+  + +K  L    PRI+Y+SCNP T   +L+ L H          +K+  L   D FP+T H+EC
Sbjct:  177 REMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSY--NCETIFVDPPRSGLDHETVK--LVQAYPRILYISCNPETLCANLEQLQH---------THKISRLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERPG (tRNA (uracil-5-)-methyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=trmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N      +L   ++   G  GD    +L+L+CG G   L LAR  + V   E+   +++ A  N   NNI N   +           QG  + N++ G D G+     + +  DP R G+  + +K  L    PRI+Y+SCNP T   +L+ L H          +K+  L   D FP+T H+EC
Sbjct:  177 REMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSY--NCETIFVDPPRSGLDHETVK--LVQAYPRILYISCNPETLCANLEQLQH---------THKISRLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERPE (tRNA (uracil-5-)-methyltransferase OS=Yersinia pestis GN=trmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N      +L   ++   G  GD    +L+L+CG G   L LAR  + V   E+   +++ A  N   NNI N   +           QG  + N++ G D G+     + +  DP R G+  + +K  L    PRI+Y+SCNP T   +L+ L H          +K+  L   D FP+T H+EC
Sbjct:  177 REMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSY--NCETIFVDPPRSGLDHETVK--LVQAYPRILYISCNPETLCANLEQLQH---------THKISRLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERPB (tRNA (uracil-5-)-methyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=trmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N      +L   ++   G  GD    +L+L+CG G   L LAR  + V   E+   +++ A  N   NNI N   +           QG  + N++ G D G+     + +  DP R G+  + +K  L    PRI+Y+SCNP T   +L+ L H          +K+  L   D FP+T H+EC
Sbjct:  177 REMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSY--NCETIFVDPPRSGLDHETVK--LVQAYPRILYISCNPETLCANLEQLQH---------THKISRLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERPA (tRNA (uracil-5-)-methyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=trmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N      +L   ++   G  GD    +L+L+CG G   L LAR  + V   E+   +++ A  N   NNI N   +           QG  + N++ G D G+     + +  DP R G+  + +K  L    PRI+Y+SCNP T   +L+ L H          +K+  L   D FP+T H+EC
Sbjct:  177 REMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSY--NCETIFVDPPRSGLDHETVK--LVQAYPRILYISCNPETLCANLEQLQH---------THKISRLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERP3 (tRNA (uracil-5-)-methyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=trmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGG-DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N      +L   ++   G  GD    +L+L+CG G   L LAR  + V   E+   +++ A  N   NNI N   +           QG  + N++ G D G+     + +  DP R G+  + +K  L    PRI+Y+SCNP T   +L+ L H          +K+  L   D FP+T H+EC
Sbjct:  177 REMIYRQVENSFTQPNAAVNIHMLEWALDVTQGATGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSY--NCETIFVDPPRSGLDHETVK--LVQAYPRILYISCNPETLCANLEQLQH---------THKISRLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_CAMC1 (tRNA (uracil-5-)-methyltransferase OS=Campylobacter concisus (strain 13826) GN=trmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 55/193 (28.50%), Postives = 90/193 (46.63%), Query Frame = 2
Query:  329 FQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPK-PDIVISD---------PNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            F +S N+F Q N    E +    ++C     D    +L+L+CG G   + L+   K+V   E+   +I++A +N +LN + N  F++ D +++   F     F +  DI +SD         P R G+   +I F+   K   I+Y+SCNP T   +L+ L            +K+      D F +T HIEC
Sbjct:  182 FSLSENAFIQPNKAVNEKMIAWAKECVQSGAD----LLELYCGHGNFTIPLSFKFKNVLATEISKSSIANALKNCELNGVENIKFLRMDADELMSAFAGVREFNRLKDIKLSDFNFSHVLVDPPRAGLSESVINFIRNFK--NIIYISCNPETLKENLNELTKS---------HKVIKFALFDQFANTHHIEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_RALEH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rumA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 57/154 (37.01%), Postives = 76/154 (49.35%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP-------RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +LDLFCG G   L LA   K V G E      + A  NA+ N ++  T F   +L ++  +   A  + D  + DP R G  + + K L +L          RIVYVSC+PAT ARD   L HG G       Y+L     V+MFPHT H+E +
Sbjct:  290 LLDLFCGIGNFTLPLATQGKSVMGIEGSEALTTRALANAEYNGLAARTEFACRNLFEVTAEDIAALGRFDRWLVDPPREGA-LAVCKALGELAQQGSNVLPQRIVYVSCSPATLARDAGLLVHGAG-------YRLAGAGVVNMFPHTSHVESI 435          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y098_LEPIN (Uncharacterized RNA methyltransferase LA_0098 OS=Leptospira interrogans GN=LA_0098 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.420e-13
Identity = 56/188 (29.79%), Postives = 83/188 (44.15%), Query Frame = 2
Query:  314 LRGLTFQISANSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            L+ + ++I A  F Q N +  A  L K+ E    L  +    +L+L+CG+G I + L        GYE+    +  A RN  LN IS+  F   +L     D           I +P R G+  K+++ L+K      +Y SCN  T  RDL           +   YKL ++  VD FP T H E +
Sbjct:  234 LKRIVWEIPAGGFSQVNRYLIAPWLEKIFE----LVPNNQNRILELYCGSGLIAIALKSKTTSWLGYEISSDCVQQAKRNVLLNGISSCDFKTLNLETDWIDSEEVL-NSSFWIMNPPRAGLSKKVLQTLIKTSPNGFLYSSCNHTTLVRDLSLF--------LNKDYKLSNVTLVDFFPRTKHFEVI 408          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_RALSO (23S rRNA (uracil-5-)-methyltransferase rumA OS=Ralstonia solanacearum GN=rumA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.833e-13
Identity = 66/200 (33.00%), Postives = 87/200 (43.50%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLY----KLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP----------RIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            G+T       F Q N     VL     KL++   G R      +LDLFCG G   L +A     V G E      + A  NA+ N +    TF   +L ++  D   A  + D  + DP R G  + + K + +L             RIVYVSCNPAT ARD   L H  G       Y+L     V+MFPHT H+E +
Sbjct:  259 GITMPFKPTDFTQVNHQINRVLMSRALKLLDARPGDR------LLDLFCGIGNFTLPMATRGCEVMGIEGSEALTTRALANAQHNGLDGKTTFACRNLFEVSADDIAALGRFDRWLVDPPREGA-LAVSKAVAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAG-------YRLAGAGVVNMFPHTSHVESI 444          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
TRMA_YERPN2.618e-1330.00tRNA (uracil-5-)-methyltransferase OS=Yersinia pes... [more]
TRMA_YERPG2.618e-1330.00tRNA (uracil-5-)-methyltransferase OS=Yersinia pes... [more]
TRMA_YERPE2.618e-1330.00tRNA (uracil-5-)-methyltransferase OS=Yersinia pes... [more]
TRMA_YERPB2.618e-1330.00tRNA (uracil-5-)-methyltransferase OS=Yersinia pse... [more]
TRMA_YERPA2.618e-1330.00tRNA (uracil-5-)-methyltransferase OS=Yersinia pes... [more]
TRMA_YERP32.618e-1330.00tRNA (uracil-5-)-methyltransferase OS=Yersinia pse... [more]
TRMA_CAMC12.618e-1328.50tRNA (uracil-5-)-methyltransferase OS=Campylobacte... [more]
RUMA_RALEH2.618e-1337.0123S rRNA (uracil-5-)-methyltransferase rumA OS=Ral... [more]
Y098_LEPIN3.420e-1329.79Uncharacterized RNA methyltransferase LA_0098 OS=L... [more]
RUMA_RALSO5.833e-1333.0023S rRNA (uracil-5-)-methyltransferase rumA OS=Ral... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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