CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ENT38 (tRNA (uracil-5-)-methyltransferase OS=Enterobacter sp. (strain 638) GN=trmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.423e-12
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-------------QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   +    G +GD    +L+L+CG G   L LAR  + V   E+   +++ A  N   N+I N   +             + + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNVQMLEWALSATEGSKGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVASAQYNIAANHIDNVQIIRMAAEEFTQAMNGEREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y2648_BRAJA (Uncharacterized RNA methyltransferase bll2648 OS=Bradyrhizobium japonicum GN=bll2648 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.100e-11
Identity = 61/185 (32.97%), Postives = 79/185 (42.70%), Query Frame = 2
Query:  347 SFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKP---------DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            SF Q      E L  L+ +  G     +K VLDLFCG G   L LA   + V  Y+    A++   + A+   +        DL          F +P         D V+ DP R G   + +K L     P IV VSCN AT ARD   L        I G Y++  + PVD F HTPH+E V
Sbjct:  250 SFLQATVAGEETLASLVAERVGK----AKEVLDLFCGVGPFALRLAEKAR-VTAYDSDAGAVAALAKAARTPGLKPIRCEPRDL----------FRRPLVPQELRDFDAVVFDPPRQGAQAQALK-LAASTVPVIVAVSCNVATFARDARLL--------IDGGYRIDGVVPVDQFRHTPHVELV 410          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERE8 (tRNA (uracil-5-)-methyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=trmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.100e-11
Identity = 56/198 (28.28%), Postives = 90/198 (45.45%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N   A V   ++E    +    S  +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   +           QG  + N++ G    ++   + +  DP R G+  + +K  L    PRI+Y+SCNP T   +L+ L +          +K+  L   D FP+T H+EC
Sbjct:  177 RDMIYRQVENSFTQPN---AAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSY-NCETIFVDPPRSGLDDETVK--LVQAYPRILYISCNPETLCANLEQLQY---------THKISRLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ESCF3 (tRNA (uracil-5-)-methyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=trmA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.437e-11
Identity = 52/198 (26.26%), Postives = 91/198 (45.96%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N   A +  +++E    +  D    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  177 REMIYRQVENSFTQPN---AAMNIQMLEWALDVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_SERP5 (tRNA (uracil-5-)-methyltransferase OS=Serratia proteamaculans (strain 568) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.451e-11
Identity = 51/199 (25.63%), Postives = 91/199 (45.73%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR  + V   E+   +++ A  N   N I N   ++              + N++ G   +++   + +  DP R G+  + +K +     PRI+Y+SCNP T   +L         + ++  + +  L   D FP+T H+EC
Sbjct:  177 RDMIYRQVENSFTQPNAALNIQMLEWALDVTTGSKGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANQIDNVQIIRMAAEDFTQAMNGVREFNRLKGIDLSSY-NCETIFVDPPRSGLDDETVKMVQAY--PRILYISCNPETLCANL---------ETLQQTHSISRLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_BORA1 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Bordetella avium (strain 197N) GN=rumA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.451e-11
Identity = 51/150 (34.00%), Postives = 70/150 (46.67%), Query Frame = 2
Query:  437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHM--KLIKFLLKLKAPR-IVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            V DLFCG G   L LA   +   G E        A   A  + +   T F   +L ++   +       D ++ DP R G H   + +  L   + PR IVYVSCNPAT ARD   + H       +G Y LK+   ++MFPHT H+E +
Sbjct:  290 VADLFCGLGNFTLPLATQGREAVGVEGSKALTDRALEAAARHGLEGRTRFATLNLFEVDVSWLRGLGYFDRMLIDPPREGAHAVAQALSQLTPAERPRRIVYVSCNPATLARDAAIMVH-------EGGYVLKAAGVINMFPHTGHVESI 432          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_SHIFL (tRNA (uracil-5-)-methyltransferase OS=Shigella flexneri GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 53/190 (27.89%), Postives = 87/190 (45.79%), Query Frame = 2
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++    I + DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFV-DPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_SHIF8 (tRNA (uracil-5-)-methyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 53/190 (27.89%), Postives = 87/190 (45.79%), Query Frame = 2
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++    I + DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNITANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFV-DPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_SHIBS (tRNA (uracil-5-)-methyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 53/190 (27.89%), Postives = 87/190 (45.79%), Query Frame = 2
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++    I + DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFV-DPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ENTS8 (tRNA (uracil-5-)-methyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=trmA PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 51/190 (26.84%), Postives = 86/190 (45.26%), Query Frame = 2
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N      +L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  + +K +     P I+Y+SCNP T   +LD L            ++++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIHMLEWALDVTQGSKGD----LLELYCGNGNFSLALARNFNRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDQETVKMVQAY--PHILYISCNPQTLCENLDTLSQ---------THRVERLALFDQFPYTHHMEC 359          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
TRMA_ENT388.423e-1227.37tRNA (uracil-5-)-methyltransferase OS=Enterobacter... [more]
Y2648_BRAJA1.100e-1132.97Uncharacterized RNA methyltransferase bll2648 OS=B... [more]
TRMA_YERE81.100e-1128.28tRNA (uracil-5-)-methyltransferase OS=Yersinia ent... [more]
TRMA_ESCF31.437e-1126.26tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_SERP52.451e-1125.63tRNA (uracil-5-)-methyltransferase OS=Serratia pro... [more]
RUMA_BORA12.451e-1134.0023S rRNA (uracil-5-)-methyltransferase rumA OS=Bor... [more]
TRMA_SHIFL3.201e-1127.89tRNA (uracil-5-)-methyltransferase OS=Shigella fle... [more]
TRMA_SHIF83.201e-1127.89tRNA (uracil-5-)-methyltransferase OS=Shigella fle... [more]
TRMA_SHIBS3.201e-1127.89tRNA (uracil-5-)-methyltransferase OS=Shigella boy... [more]
TRMA_ENTS83.201e-1126.84tRNA (uracil-5-)-methyltransferase OS=Enterobacter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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