CX069767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ENT38 (tRNA (uracil-5-)-methyltransferase OS=Enterobacter sp. (strain 638) GN=trmA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.423e-12 Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 Query: 344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-------------QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 NSF Q N ++L + G +GD +L+L+CG G L LAR + V E+ +++ A N N+I N + + + N++ G ++ + + + DP R G+ + K + PRI+Y+SCNP T ++L+ L +K++ L D FP+T H+EC Sbjct: 186 NSFTQPNAAMNVQMLEWALSATEGSKGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVASAQYNIAANHIDNVQIIRMAAEEFTQAMNGEREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y2648_BRAJA (Uncharacterized RNA methyltransferase bll2648 OS=Bradyrhizobium japonicum GN=bll2648 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.100e-11 Identity = 61/185 (32.97%), Postives = 79/185 (42.70%), Query Frame = 2 Query: 347 SFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKP---------DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 SF Q E L L+ + G +K VLDLFCG G L LA + V Y+ A++ + A+ + DL F +P D V+ DP R G + +K L P IV VSCN AT ARD L I G Y++ + PVD F HTPH+E V Sbjct: 250 SFLQATVAGEETLASLVAERVGK----AKEVLDLFCGVGPFALRLAEKAR-VTAYDSDAGAVAALAKAARTPGLKPIRCEPRDL----------FRRPLVPQELRDFDAVVFDPPRQGAQAQALK-LAASTVPVIVAVSCNVATFARDARLL--------IDGGYRIDGVVPVDQFRHTPHVELV 410
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_YERE8 (tRNA (uracil-5-)-methyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=trmA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.100e-11 Identity = 56/198 (28.28%), Postives = 90/198 (45.45%), Query Frame = 2 Query: 317 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-----------QG--DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 R + ++ NSF Q N A V ++E + S +L+L+CG G L LAR V E+ +++ A N N+I N + QG + N++ G ++ + + DP R G+ + +K L PRI+Y+SCNP T +L+ L + +K+ L D FP+T H+EC Sbjct: 177 RDMIYRQVENSFTQPN---AAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSY-NCETIFVDPPRSGLDDETVK--LVQAYPRILYISCNPETLCANLEQLQY---------THKISRLALFDQFPYTHHMEC 359
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ESCF3 (tRNA (uracil-5-)-methyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=trmA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.437e-11 Identity = 52/198 (26.26%), Postives = 91/198 (45.96%), Query Frame = 2 Query: 317 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 R + ++ NSF Q N A + +++E + D +L+L+CG G L LAR V E+ +++ A N N+I N ++ + N++ G ++ + + + DP R G+ + K + PRI+Y+SCNP T ++L+ L +K++ L D FP+T H+EC Sbjct: 177 REMIYRQVENSFTQPN---AAMNIQMLEWALDVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_SERP5 (tRNA (uracil-5-)-methyltransferase OS=Serratia proteamaculans (strain 568) GN=trmA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.451e-11 Identity = 51/199 (25.63%), Postives = 91/199 (45.73%), Query Frame = 2 Query: 317 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 R + ++ NSF Q N ++L ++ G +GD +L+L+CG G L LAR + V E+ +++ A N N I N ++ + N++ G +++ + + DP R G+ + +K + PRI+Y+SCNP T +L + ++ + + L D FP+T H+EC Sbjct: 177 RDMIYRQVENSFTQPNAALNIQMLEWALDVTTGSKGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANQIDNVQIIRMAAEDFTQAMNGVREFNRLKGIDLSSY-NCETIFVDPPRSGLDDETVKMVQAY--PRILYISCNPETLCANL---------ETLQQTHSISRLALFDQFPYTHHMEC 359
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_BORA1 (23S rRNA (uracil-5-)-methyltransferase rumA OS=Bordetella avium (strain 197N) GN=rumA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.451e-11 Identity = 51/150 (34.00%), Postives = 70/150 (46.67%), Query Frame = 2 Query: 437 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHM--KLIKFLLKLKAPR-IVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 V DLFCG G L LA + G E A A + + T F +L ++ + D ++ DP R G H + + L + PR IVYVSCNPAT ARD + H +G Y LK+ ++MFPHT H+E + Sbjct: 290 VADLFCGLGNFTLPLATQGREAVGVEGSKALTDRALEAAARHGLEGRTRFATLNLFEVDVSWLRGLGYFDRMLIDPPREGAHAVAQALSQLTPAERPRRIVYVSCNPATLARDAAIMVH-------EGGYVLKAAGVINMFPHTGHVESI 432
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_SHIFL (tRNA (uracil-5-)-methyltransferase OS=Shigella flexneri GN=trmA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11 Identity = 53/190 (27.89%), Postives = 87/190 (45.79%), Query Frame = 2 Query: 344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 NSF Q N ++L ++ G +GD +L+L+CG G L LAR V E+ +++ A N N+I N ++ + N++ G ++ I + DP R G+ + K + PRI+Y+SCNP T ++L+ L +K++ L D FP+T H+EC Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFV-DPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_SHIF8 (tRNA (uracil-5-)-methyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=trmA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11 Identity = 53/190 (27.89%), Postives = 87/190 (45.79%), Query Frame = 2 Query: 344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 NSF Q N ++L ++ G +GD +L+L+CG G L LAR V E+ +++ A N N+I N ++ + N++ G ++ I + DP R G+ + K + PRI+Y+SCNP T ++L+ L +K++ L D FP+T H+EC Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNITANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFV-DPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_SHIBS (tRNA (uracil-5-)-methyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=trmA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11 Identity = 53/190 (27.89%), Postives = 87/190 (45.79%), Query Frame = 2 Query: 344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 NSF Q N ++L ++ G +GD +L+L+CG G L LAR V E+ +++ A N N+I N ++ + N++ G ++ I + DP R G+ + K + PRI+Y+SCNP T ++L+ L +K++ L D FP+T H+EC Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFV-DPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ENTS8 (tRNA (uracil-5-)-methyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=trmA PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11 Identity = 51/190 (26.84%), Postives = 86/190 (45.26%), Query Frame = 2 Query: 344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 NSF Q N +L ++ G +GD +L+L+CG G L LAR V E+ +++ A N N+I N ++ + N++ G ++ + + + DP R G+ + +K + P I+Y+SCNP T +LD L ++++ L D FP+T H+EC Sbjct: 186 NSFTQPNAAMNIHMLEWALDVTQGSKGD----LLELYCGNGNFSLALARNFNRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDQETVKMVQAY--PHILYISCNPQTLCENLDTLSQ---------THRVERLALFDQFPYTHHMEC 359 The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 378
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bpback to top |