CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOUT (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOSE (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli (strain SE11) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOLI (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli (strain K12) GN=trmA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOLC (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOL6 (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O6 GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOL5 (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOK1 (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O1:K1 / APEC GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOHS (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECODH (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOBW (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli (strain K12 / BW2952) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
TRMA_ECOUT3.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECOSE3.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECOLI3.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECOLC3.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECOL63.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECOL53.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECOK13.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECOHS3.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECODH3.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECOBW3.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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