CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOBR (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli (strain B / REL606) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOBB (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli (strain B / BL21) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECO8A (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O8 (strain IAI1) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECO81 (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O81 (strain ED1a) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECO5E (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECO57 (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O157:H7 GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECO55 (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECO45 (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECO27 (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
[Close]
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECO24 (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=trmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
TRMA_ECOBR3.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECOBB3.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECO8A3.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECO813.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECO5E3.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECO573.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECO553.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECO453.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECO273.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECO243.201e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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