CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_DECAR (23S rRNA (uracil-5-)-methyltransferase rumA OS=Dechloromonas aromatica (strain RCB) GN=rumA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 58/186 (31.18%), Postives = 82/186 (44.09%), Query Frame = 2
Query:  320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            GL F      F Q N     VL +       L    S+ + D+FCG G   L +AR    V G E     +     +A  N +++   F   +L +       A  + D ++ DP R G  ++L++ + K    RIVYVSCNP T ARD   L    G       Y+  S   V+MFPHT H+E +
Sbjct:  251 GLEFDFKPTDFTQVNHAVNRVLVR--RALRLLDPQPSERIADMFCGLGNFTLPIARSGATVIGVEGSAALVRRGRESAAANGLADHVEFGVANLFECTEQSLAALGRFDKMLIDPPREGA-VELVRAIGKDAPKRIVYVSCNPGTLARDAAVLVTEKG-------YRFVSAGAVNMFPHTAHVESI 426          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_CAMJD (tRNA (uracil-5-)-methyltransferase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=trmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.180e-11
Identity = 56/212 (26.42%), Postives = 97/212 (45.75%), Query Frame = 2
Query:  284 LYGKSNITETL----RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ---GDLNKIGGDFGNAFPKPDI---------VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            ++   N+ +TL    R + ++ + + F Q NT   E +   +  C  L       +L+L+CG G   L LA++   V   E+   +I+ A +N KLNN +N  F +    +L+         F   DI         V+ DP R G+   +I  + K +   I+Y+SCNP T   +L         + +   +++++    D F +TPH+EC
Sbjct:  152 IFKTENLRQTLNIQGREIFYEFNNDCFIQPNTTINEKMITWV--CEILSIQKRMDLLELYCGYGNFTLALAQFFFKVLATEISKSSINFALKNCKLNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYE--NIIYISCNPITLKENL---------KELSLTHRVENFALFDQFVNTPHLEC 350          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_NITSB (tRNA (uracil-5-)-methyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=trmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11
Identity = 61/209 (29.19%), Postives = 90/209 (43.06%), Query Frame = 2
Query:  290 GKSNITETL----RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-----GGDFGNAFPKPDI-------VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GK  ITE L    +   F+    SF Q N +   V  K+IE    +  D    +L+L+CG G   L L+R+ + V   EV   +I  A  N  LN I N  FV+    ++     G          D+       V  DP R G+     + + +     IVY+SCNP T  RDL         + +   + ++ +   D FP+TPH+E
Sbjct:  159 GKEYITEKLPVFEKEFLFRHYEGSFTQPNPY---VNIKMIEWAGRIAKDLQGDLLELYCGAGNFTLPLSRYFEKVLATEVNKSSIKAAKENVALNGIENVEFVRLSSQEVTQALRGVRDFRRLENIDLHSYNFQTVFVDPPRCGLDDDTRELVREF--DNIVYISCNPQTLHRDL---------EELSKTHTVQKVAVFDQFPYTPHLE 353          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOSM (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=trmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDGETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOLU (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=trmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11
Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   ++   G +GD    +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  ++L+ L            +K++ L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDGETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y3828_BDEBA (Uncharacterized RNA methyltransferase Bd3828 OS=Bdellovibrio bacteriovorus GN=Bd3828 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 55/178 (30.90%), Postives = 83/178 (46.63%), Query Frame = 2
Query:  350 FFQTNTHQAEVLYKLIEDCAGLRGDGS-KIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            F Q N  Q E L +   D AG   DG  K V DL+ G G     LA       + G E+ P+ +  A   +K+ +    T+   D+         +  K D+V+ DP R G     ++ L   +  +I+Y+SC+P + ARDL++         IK  YKL  +Q  +MFP T H+E +
Sbjct:  219 FSQVNRFQNEDLLRTALDWAG---DGPYKKVYDLYAGAGNFTFPLAAKYAGSEIIGVELNPKLVERA--RSKITD-KRMTYFMSDVETYMRRA--SIGKDDLVVLDPPRAGASEYTMQTLAAAQPRKIIYISCHPVSLARDLNWFFAQTQKLGIK--YKLDRVQTFEMFPQTDHVETI 386          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_KLEP3 (tRNA (uracil-5-)-methyltransferase OS=Klebsiella pneumoniae (strain 342) GN=trmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 51/198 (25.76%), Postives = 90/198 (45.45%), Query Frame = 2
Query:  317 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            R + ++   NSF Q N   A +  +++E    +  + +  +L+L+CG G   L LAR    V   E+   +++ A  N   N+I N   ++              + N++ G    ++ + + +  DP R G+  +  K +     PRI+Y+SCNP T  R+L+ L            + +  L   D FP+T H+EC
Sbjct:  177 REMIYRQVENSFTQPN---AAMNIQMLEWALDVTKEATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCRNLETLSQ---------THNVTRLALFDQFPYTHHMEC 359          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_DICDC (tRNA (uracil-5-)-methyltransferase OS=Dickeya dadantii (strain Ech703) GN=trmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 53/190 (27.89%), Postives = 83/190 (43.68%), Query Frame = 2
Query:  344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            NSF Q N     ++L   +    G +GD    +L+L+CG G   L LAR  + V   E+   ++  A  N   N I N   ++                N++ G    A  + D +  DP R G+  + ++  L  + PRI+Y+SCNP T   +L  L            +++  L   D FP+T H+EC
Sbjct:  186 NSFTQPNAAMNIQMLEWALSVTEGSKGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVQAAQYNITANQIGNVQIIRMAAEEFTQAMRGVRQFNRLEG-IDLASYRCDTIFVDPPRSGLDEETVR--LVQEYPRILYISCNPETLCANLATLTQ---------THRVSQLALFDQFPYTHHMEC 359          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
RUMA_DECAR3.201e-1131.1823S rRNA (uracil-5-)-methyltransferase rumA OS=Dec... [more]
TRMA_CAMJD4.180e-1126.42tRNA (uracil-5-)-methyltransferase OS=Campylobacte... [more]
TRMA_NITSB5.460e-1129.19tRNA (uracil-5-)-methyltransferase OS=Nitratirupto... [more]
TRMA_ECOSM5.460e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
TRMA_ECOLU5.460e-1127.37tRNA (uracil-5-)-methyltransferase OS=Escherichia ... [more]
Y3828_BDEBA7.131e-1130.90Uncharacterized RNA methyltransferase Bd3828 OS=Bd... [more]
TRMA_KLEP39.313e-1125.76tRNA (uracil-5-)-methyltransferase OS=Klebsiella p... [more]
TRMA_DICDC9.313e-1127.89tRNA (uracil-5-)-methyltransferase OS=Dickeya dada... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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