CX069767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_DECAR (23S rRNA (uracil-5-)-methyltransferase rumA OS=Dechloromonas aromatica (strain RCB) GN=rumA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11 Identity = 58/186 (31.18%), Postives = 82/186 (44.09%), Query Frame = 2 Query: 320 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 GL F F Q N VL + L S+ + D+FCG G L +AR V G E + +A N +++ F +L + A + D ++ DP R G ++L++ + K RIVYVSCNP T ARD L G Y+ S V+MFPHT H+E + Sbjct: 251 GLEFDFKPTDFTQVNHAVNRVLVR--RALRLLDPQPSERIADMFCGLGNFTLPIARSGATVIGVEGSAALVRRGRESAAANGLADHVEFGVANLFECTEQSLAALGRFDKMLIDPPREGA-VELVRAIGKDAPKRIVYVSCNPGTLARDAAVLVTEKG-------YRFVSAGAVNMFPHTAHVESI 426
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_CAMJD (tRNA (uracil-5-)-methyltransferase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=trmA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.180e-11 Identity = 56/212 (26.42%), Postives = 97/212 (45.75%), Query Frame = 2 Query: 284 LYGKSNITETL----RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ---GDLNKIGGDFGNAFPKPDI---------VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 ++ N+ +TL R + ++ + + F Q NT E + + C L +L+L+CG G L LA++ V E+ +I+ A +N KLNN +N F + +L+ F DI V+ DP R G+ +I + K + I+Y+SCNP T +L + + +++++ D F +TPH+EC Sbjct: 152 IFKTENLRQTLNIQGREIFYEFNNDCFIQPNTTINEKMITWV--CEILSIQKRMDLLELYCGYGNFTLALAQFFFKVLATEISKSSINFALKNCKLNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYE--NIIYISCNPITLKENL---------KELSLTHRVENFALFDQFVNTPHLEC 350
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_NITSB (tRNA (uracil-5-)-methyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=trmA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11 Identity = 61/209 (29.19%), Postives = 90/209 (43.06%), Query Frame = 2 Query: 290 GKSNITETL----RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-----GGDFGNAFPKPDI-------VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868 GK ITE L + F+ SF Q N + V K+IE + D +L+L+CG G L L+R+ + V EV +I A N LN I N FV+ ++ G D+ V DP R G+ + + + IVY+SCNP T RDL + + + ++ + D FP+TPH+E Sbjct: 159 GKEYITEKLPVFEKEFLFRHYEGSFTQPNPY---VNIKMIEWAGRIAKDLQGDLLELYCGAGNFTLPLSRYFEKVLATEVNKSSIKAAKENVALNGIENVEFVRLSSQEVTQALRGVRDFRRLENIDLHSYNFQTVFVDPPRCGLDDDTRELVREF--DNIVYISCNPQTLHRDL---------EELSKTHTVQKVAVFDQFPYTPHLE 353
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOSM (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=trmA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11 Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 Query: 344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 NSF Q N ++L ++ G +GD +L+L+CG G L LAR V E+ +++ A N N+I N ++ + N++ G ++ + + + DP R G+ + K + PRI+Y+SCNP T ++L+ L +K++ L D FP+T H+EC Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDGETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_ECOLU (tRNA (uracil-5-)-methyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=trmA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11 Identity = 52/190 (27.37%), Postives = 88/190 (46.32%), Query Frame = 2 Query: 344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 NSF Q N ++L ++ G +GD +L+L+CG G L LAR V E+ +++ A N N+I N ++ + N++ G ++ + + + DP R G+ + K + PRI+Y+SCNP T ++L+ L +K++ L D FP+T H+EC Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-QCETIFVDPPRSGLDGETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMEC 359
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y3828_BDEBA (Uncharacterized RNA methyltransferase Bd3828 OS=Bdellovibrio bacteriovorus GN=Bd3828 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11 Identity = 55/178 (30.90%), Postives = 83/178 (46.63%), Query Frame = 2 Query: 350 FFQTNTHQAEVLYKLIEDCAGLRGDGS-KIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874 F Q N Q E L + D AG DG K V DL+ G G LA + G E+ P+ + A +K+ + T+ D+ + K D+V+ DP R G ++ L + +I+Y+SC+P + ARDL++ IK YKL +Q +MFP T H+E + Sbjct: 219 FSQVNRFQNEDLLRTALDWAG---DGPYKKVYDLYAGAGNFTFPLAAKYAGSEIIGVELNPKLVERA--RSKITD-KRMTYFMSDVETYMRRA--SIGKDDLVVLDPPRAGASEYTMQTLAAAQPRKIIYISCHPVSLARDLNWFFAQTQKLGIK--YKLDRVQTFEMFPQTDHVETI 386
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_KLEP3 (tRNA (uracil-5-)-methyltransferase OS=Klebsiella pneumoniae (strain 342) GN=trmA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11 Identity = 51/198 (25.76%), Postives = 90/198 (45.45%), Query Frame = 2 Query: 317 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 R + ++ NSF Q N A + +++E + + + +L+L+CG G L LAR V E+ +++ A N N+I N ++ + N++ G ++ + + + DP R G+ + K + PRI+Y+SCNP T R+L+ L + + L D FP+T H+EC Sbjct: 177 REMIYRQVENSFTQPN---AAMNIQMLEWALDVTKEATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSY-QCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCRNLETLSQ---------THNVTRLALFDQFPYTHHMEC 359
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRMA_DICDC (tRNA (uracil-5-)-methyltransferase OS=Dickeya dadantii (strain Ech703) GN=trmA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11 Identity = 53/190 (27.89%), Postives = 83/190 (43.68%), Query Frame = 2 Query: 344 NSFFQTNTHQ-AEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871 NSF Q N ++L + G +GD +L+L+CG G L LAR + V E+ ++ A N N I N ++ N++ G A + D + DP R G+ + ++ L + PRI+Y+SCNP T +L L +++ L D FP+T H+EC Sbjct: 186 NSFTQPNAAMNIQMLEWALSVTEGSKGD----LLELYCGNGNFSLALARNFERVLATEIAKPSVQAAQYNITANQIGNVQIIRMAAEEFTQAMRGVRQFNRLEG-IDLASYRCDTIFVDPPRSGLDEETVR--LVQEYPRILYISCNPETLCANLATLTQ---------THRVSQLALFDQFPYTHHMEC 359 The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 378
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bpback to top |