CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y885_CHLPN (Uncharacterized RNA methyltransferase CPn_0885/CP_0981/CPj0885/CpB0914 OS=Chlamydia pneumoniae GN=CPn_0885 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 8.102e-31
Identity = 91/289 (31.49%), Postives = 141/289 (48.79%), Query Frame = 2
Query:   44 LSPYDVHSHSGFLKHLMLRTGSDVK--------TGLPELMVNFVTSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETL------RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            L  Y    + G L  L +RTGS  +        +G PE  VN        E+L      +SS   + SI               E   LYG  +I + L         +F +   SFFQ    QA  + +  ++   +  +GS+ +LDL+CG GTIG+ L+ +VK+V G E++P A++ A  N K NN  +   V  +  K           PD++I DP R GM  K++K++L++ +P+IVY+SCNP T  ++   L        I G Y++K +QP+D FP++ H+E
Sbjct:  118 LMAYFPPKNKGSLCTLTVRTGSPQQNFMVILTTSGTPEYRVNEACIDEWKEIL------LSSSLNIASIYWEEKVAARGISTYYETKLLYGAPSIQQKLSLPSDGNSASFSLRPRSFFQPQITQAAKIIETAKEF--INPEGSETLLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKEDCVEVYLEDAKAFCKRNENCKAPDVIIIDPPRCGMQSKVLKYILRIGSPKIVYISCNPKTQFQECADL--------ISGGYRIKKMQPIDQFPYSTHLE 390          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y1967_SYNY3 (Uncharacterized RNA methyltransferase sll1967 OS=Synechocystis sp. (strain PCC 6803) GN=sll1967 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.102e-31
Identity = 84/279 (30.11%), Postives = 140/279 (50.18%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYK--PELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 871
            G S YD     G L+HL LR G   +TG  E+++  + S++K  P+L     E +   P++  I              +E   + G+    E    L+F + AN+FFQ N+  AE+L   ++    L+G  +++++D + G GT  L LAR V+     EV   ++    RNA++N I+N  F+ G +  +          PD+++ DP R G   ++++ +++ +  +I Y+SC P T ARDL +LC        +G Y +  +Q  D FP T H+EC
Sbjct:  193 GWSIYDEEKKQGKLRHLSLRIGQ--RTG--EMLLTLI-SAHKGLPDLEEQAGEWLERYPDLGGICLNIQPEPNNRIFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGAAELLLTRLQQALNLQG--AELLVDAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLSEI---PDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLC-------AEGFYGITWVQGCDFFPQTAHVEC 454          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRM2A_HUMAN (tRNA (uracil-5-)-methyltransferase homolog A OS=Homo sapiens GN=TRMT2A PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.021e-30
Identity = 84/196 (42.86%), Postives = 112/196 (57.14%), Query Frame = 2
Query:  290 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV-ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC-YKLKSLQPVDMFPHTPHIE 868
            G   I E L GLTF+IS ++FFQ NT  AEVLY +I+D A L  D   +VLD+ CGTGTIGL LAR VK V G E+ P+A+ DA  NA+ N +SN  F  G    +     +      +V I DP R G+H K+I  + + K   R++YVSCNP     +   LC    ++ +KG  ++      VD+FP TPH E
Sbjct:  389 GDRCIHEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQDWAQL--DAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPTLVSRLASQHLVAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGIPFRPVKAVAVDLFPQTPHCE 581          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y292_LEPIN (Uncharacterized RNA methyltransferase LA_0292 OS=Leptospira interrogans GN=LA_0292 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.528e-29
Identity = 95/290 (32.76%), Postives = 137/290 (47.24%), Query Frame = 2
Query:   44 LSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYKPELLRPLVEKI-----------SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLI-EDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF-PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            L PY     SG L+H++LR  +  +    E++V  VT+  +    + L +++           +S  +VV I+             E+E T YG+  + E +  L FQI  ++FFQ N  Q E LY LI ED        +K V+D +CG GTI L +A   K V G E    +I  A   +K N I N  F++G   K+      A     D+V+ DP R G+  +    LL  K  +I+YVSCNP T  RD   L            +K + + PVD+FPHT H+E V
Sbjct:  120 LEPYHEKKGSGLLRHIVLRKANATQ----EILVGIVTNESEIPGRKKLTDRLYSYIQQFLYKENSKADVVGILQNVNRKNTKVVLGEKEVTWYGRHFVKEKIGKLDFQIGLSTFFQVNPFQIENLYNLILEDL-----PENKCVVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKG---KVLDTLRAALNENSDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLRDAIELTKS---------FKYEKITPVDLFPHTSHLESV 388          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y249_LEPIC (Uncharacterized RNA methyltransferase LIC_10249 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=LIC_10249 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.528e-29
Identity = 95/290 (32.76%), Postives = 137/290 (47.24%), Query Frame = 2
Query:   44 LSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYKPELLRPLVEKI-----------SSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLI-EDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF-PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            L PY     SG L+H++LR  +  +    E++V  VT+  +    + L +++           +S  +VV I+             E+E T YG+  + E +  L FQI  ++FFQ N  Q E LY LI ED        +K V+D +CG GTI L +A   K V G E    +I  A   +K N I N  F++G   K+      A     D+V+ DP R G+  +    LL  K  +I+YVSCNP T  RD   L            +K + + PVD+FPHT H+E V
Sbjct:  120 LEPYHEKKGSGLLRHIVLRKANATQ----EILVGIVTNESEIPGRKKLTDRLYSYIQQFLYKENSKADVVGILQNVNRKNTKVVLGEKEVTWYGRHFVKEKIGKLDFQIGLSTFFQVNPFQIENLYNLILEDL-----PENKCVVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKG---KVLDTLRAALNENSDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLRDAIELTKS---------FKYEKITPVDLFPHTSHLESV 388          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y1137_PYRHO (Uncharacterized RNA methyltransferase PH1137 OS=Pyrococcus horikoshii GN=PH1137 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.904e-29
Identity = 100/277 (36.10%), Postives = 138/277 (49.82%), Query Frame = 2
Query:   44 LSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +S ++V    GFL++++LR G    TG  E+MVN VT   K      L +         SI              E E +++G+  ITE L  + + I  NSFFQTN++QA  L K + +      +G + VLD++ G GT G+ LA+    V G++    AI  A +NAK+N +     V  D       F       D VI DP R G+H KLIK L + K   IVYVSCNP T ARD++ L            YK+  +  +DMFPHTPH+E V
Sbjct:  160 ISVWNVKKDEGFLRYMVLREGKF--TG--EVMVNLVTKEGK------LPDPSKYFDFATSIYWSVNRTKSDVSYGEVE-SVWGREFITEKLDDVIYLIHPNSFFQTNSYQAVNLVKKVSELV----EGER-VLDMYSGVGTFGIYLAKRGFKVVGFDSNEFAIEMARKNAKINKVDAVFDVATDREVEVNGF-------DTVIVDPPRVGLHPKLIKKLNREKPEVIVYVSCNPKTFARDIEKL-----------EYKIDEIVALDMFPHTPHLELV 402          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y118_CHLMU (Uncharacterized RNA methyltransferase TC_0118 OS=Chlamydia muridarum GN=TC_0118 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.689e-28
Identity = 74/203 (36.45%), Postives = 117/203 (57.64%), Query Frame = 2
Query:  269 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            +++ ++ G+SNI        F +   SFFQ  + QAE + + I+D   +   G + +LDL+CG GTIG++L+ +VK + G E+VP A++ A  N +LN+ +   F++ D  +      +  P  DIV+ DP R GM  K +K+LL++   +I+YVSCNP T   +   L  HG         Y+L+ +QP+D FPHT H+E V
Sbjct:  208 KQQLSIEGRSNI--------FHVRPRSFFQPQSRQAEKIIQTIKDF--ISPTGEETLLDLYCGAGTIGISLSPYVKKIIGVELVPDAVASAQENIQLNSANMEVFLE-DAKQFCRRHEH-LPPLDIVVIDPPRCGMQNKALKYLLRMSPKKIIYVSCNPLTQISECSILVEHG---------YQLQRMQPIDQFPHTHHLENV 389          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y742_CHLTR (Uncharacterized RNA methyltransferase CT_742 OS=Chlamydia trachomatis GN=CT_742 PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28
Identity = 74/199 (37.19%), Postives = 113/199 (56.78%), Query Frame = 2
Query:  284 LYGKSNITETL----RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            LYG   + + L    R   F I   SFFQ  + QAE + + I++   +   G + +LDL+CG G IG+ LA +VK + G E+VP A++ A  N +LN++    F++ D  +      N  P PDIV+ DP R GM  + +K+LL++   +IVYVSCNP T  ++   L        ++  Y+L+ +QP+D FPHT H+E
Sbjct:  201 LYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQTIKEF--IDPCGEETLLDLYCGAGIIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVDMEVFLE-DAKQFCKRNEN-LPSPDIVVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQECSVL--------VEQGYQLRRMQPIDQFPHTNHLE 387          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y1901_STRPN (Uncharacterized RNA methyltransferase SP_1901 OS=Streptococcus pneumoniae GN=SP_1901 PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28
Identity = 81/253 (32.02%), Postives = 124/253 (49.01%), Query Frame = 2
Query:  116 KTGLPELMVNFVTSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            KTG  ++++    ++ +  L + + E +   PEVV++              E+   ++G+ +I E +    F +S  +F+Q N  Q EVLY   E    L  D    ++D +CG GTIG   A+ VK + G +++P+AI DA RNAK     N  +  G   +I   +     + D +I DP R G+  KL+  +L     ++VY+SCN +T ARDL  L            Y L  +Q VDMFPHT   E V
Sbjct:  206 KTGQVQIII---VTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEIYGEKTEIIWGQESIQEGVLNYEFSLSPRAFYQLNPEQTEVLYS--EAVKALDVDKEDHLIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVE---------VYDLHYIQSVDMFPHTARTEAV 444          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y1717_STRR6 (Uncharacterized RNA methyltransferase spr1717 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=spr1717 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28
Identity = 81/253 (32.02%), Postives = 124/253 (49.01%), Query Frame = 2
Query:  116 KTGLPELMVNFVTSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            KTG  ++++    ++ +  L + + E +   PEVV++              E+   ++G+ +I E +    F +S  +F+Q N  Q EVLY   E    L  D    ++D +CG GTIG   A+ VK + G +++P+AI DA RNAK     N  +  G   +I   +     + D +I DP R G+  KL+  +L     ++VY+SCN +T ARDL  L            Y L  +Q VDMFPHT   E V
Sbjct:  206 KTGQVQIII---VTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEIYGEKTEIIWGQESIQEGVLNYEFSLSPRAFYQLNPEQTEVLYS--EAVKALDVDKEDHLIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVE---------VYDLHYIQSVDMFPHTARTEAV 444          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
Y885_CHLPN8.102e-3131.49Uncharacterized RNA methyltransferase CPn_0885/CP_... [more]
Y1967_SYNY38.102e-3130.11Uncharacterized RNA methyltransferase sll1967 OS=S... [more]
TRM2A_HUMAN4.021e-3042.86tRNA (uracil-5-)-methyltransferase homolog A OS=Ho... [more]
Y292_LEPIN1.528e-2932.76Uncharacterized RNA methyltransferase LA_0292 OS=L... [more]
Y249_LEPIC1.528e-2932.76Uncharacterized RNA methyltransferase LIC_10249 OS... [more]
Y1137_PYRHO9.904e-2936.10Uncharacterized RNA methyltransferase PH1137 OS=Py... [more]
Y118_CHLMU1.689e-2836.45Uncharacterized RNA methyltransferase TC_0118 OS=C... [more]
Y742_CHLTR2.882e-2837.19Uncharacterized RNA methyltransferase CT_742 OS=Ch... [more]
Y1901_STRPN2.882e-2832.02Uncharacterized RNA methyltransferase SP_1901 OS=S... [more]
Y1717_STRR62.882e-2832.02Uncharacterized RNA methyltransferase spr1717 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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