CX069767

Overview
NameCX069767
Unique NameCX069767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y413_STRA5 (Uncharacterized RNA methyltransferase SAG0413 OS=Streptococcus agalactiae serotype V GN=SAG0413 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.283e-25
Identity = 73/248 (29.44%), Postives = 121/248 (48.79%), Query Frame = 2
Query:  131 ELMVNFVTSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            E+ + F+TS  + +    ++E +   PE+ ++              +    ++G+ +I E +    F +S  +F+Q N  Q ++LY        ++ D    ++D +CG GTIGL  A  VK V G +++P+AI DA  NA     +N  +  G    I   + +   + + +I DP R G+  KL+  +LK+   ++VYVSCN +T ARDL           +   Y +  +Q VDMFPHT   E V
Sbjct:  209 EVQLIFITSK-RLDFDDVVIELVREFPELKTVAVNINASKTSDIYGQITEVIWGQESINEEVLDYGFSLSPRAFYQLNPKQTQILYSEAVKALDVKEDDD--LIDAYCGVGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALYMGFTNTHYEAGKAEDIIPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDL---------VTLTKVYHVHYIQSVDMFPHTARTEAV 444          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRM2_MOUSE (tRNA (uracil-5-)-methyltransferase homolog OS=Mus musculus GN=Trmt2b PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.283e-25
Identity = 70/203 (34.48%), Postives = 111/203 (54.68%), Query Frame = 2
Query:  284 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF--GNAFPKPDIVISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCNP-ATCARDLDYLC--HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            L+G+ +I E L GL  +IS ++FFQ NT  AE+LY++I + +G+  +   ++LD+ CGTG IGL++A+    V+G E+V QA+ DA   A  N ++N  F  G    I           K  + + +P R G+H ++++ +   +    +V+VSC P     R+   LC       Q +   + L+   PVD+FPHTPH E V
Sbjct:  288 LFGEPHIFEDLLGLKIRISPDAFFQINTAGAEMLYRIIGELSGVNSES--LLLDICCGTGVIGLSVAQRASQVHGIELVEQAVEDARWTAAFNGVTNCEFHAGRAETILPQLLKSQKDEKLTVAVVNPARAGLHYRVVRAIRNCRTIHTLVFVSCKPHGESTRNFIELCCPPNSAKQLLGDPFVLREAVPVDLFPHTPHCELV 488          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y448_STRA3 (Uncharacterized RNA methyltransferase gbs0448 OS=Streptococcus agalactiae serotype III GN=gbs0448 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.086e-25
Identity = 72/248 (29.03%), Postives = 121/248 (48.79%), Query Frame = 2
Query:  131 ELMVNFVTSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            E+ + F+TS  + +    ++E +   PE+ ++              +    ++G+ +I E +    F +S  +F+Q N  Q ++LY        ++ D    ++D +CG GTIGL  A  VK V G +++P+AI DA  NA     +N  +  G    +   + +   + + +I DP R G+  KL+  +LK+   ++VYVSCN +T ARDL           +   Y +  +Q VDMFPHT   E V
Sbjct:  209 EVQLIFITSK-RLDFDDVVIELVREFPELKTVAVNINASKTSDIYGQITEVIWGQESINEEVLDYGFSLSPRAFYQLNPKQTQILYSEAVKALDVKEDDD--LIDAYCGVGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDVIPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDL---------VTLTKVYHVHYIQSVDMFPHTARTEAV 444          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y1228_SYNPX (Uncharacterized RNA methyltransferase SYNW1228 OS=Synechococcus sp. (strain WH8102) GN=SYNW1228 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.643e-25
Identity = 92/280 (32.86%), Postives = 125/280 (44.64%), Query Frame = 2
Query:   41 GLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYKPELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKP----DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            GLS     SHS  L+HL LR G    TG  E+++  V+S   P L R   + I     V  +                   L G   I E   GL  Q+S  +FFQ NT QAE +   I      + + +  ++D +CG GTI L LA    HV G E+ P +I  A  NA  N +   T  Q       GD  N   +       ++ DP R G+   +I+ +L      + Y+SC+ AT ARDL  L         +G Y+L+ LQPVD FP T H+E
Sbjct:  193 GLSADHDLSHSQGLRHLGLRIGHH--TG--EVLITVVSSQQLPALQRLAQQWIERWDPVKGVTLNLQPRRTNQILGATTTVLAGAPTIRELFCGLQLQLSTTTFFQINTPQAERIVACIVSWLS-QAELAGPIVDAYCGIGTISLPLAAQGHHVVGLEINPDSIDQARSNADANGLGARTEFQ------AGDVANLLKETLATCSALVVDPPRRGLESSVIEAILSDPPGLLAYLSCDMATQARDLKRLLQP------EGPYRLEQLQPVDFFPQTTHLE 455          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRM2_PONAB (tRNA (uracil-5-)-methyltransferase homolog OS=Pongo abelii GN=TRMT2B PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.306e-24
Identity = 75/205 (36.59%), Postives = 112/205 (54.63%), Query Frame = 2
Query:  284 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD----IVISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCN-PATCARDLDYLC--HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            L+G+  I E L  L  +IS ++FFQ NT  AE+LY+ + +  G+  D   I+LD+ CGTG IGL+L++    V G E+V QA+ DA   A  N I+N+ F  G   KI    G    K D    + + +P R G+H K+I+ +   +A   +V+VSC       R++  LC       + +   + L+ + PVD+FPHTPH E V
Sbjct:  281 LFGEPYIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSD--TILLDICCGTGVIGLSLSQHTSRVLGIELVEQAVEDARWTAAFNGITNSEFHTGRAEKILP--GLLKSKEDGQSIVAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQVVPVDLFPHTPHCELV 481          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: TRM2_HUMAN (tRNA (uracil-5-)-methyltransferase homolog OS=Homo sapiens GN=TRMT2B PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.306e-24
Identity = 75/205 (36.59%), Postives = 111/205 (54.15%), Query Frame = 2
Query:  284 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD----IVISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCN-PATCARDLDYLC--HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 874
            L+G+  I E L  L  +IS ++FFQ NT  AE+LY+ + +  G+  D   I+LD+ CGTG IGL+LA+    V G E++ QA+ DA   A  N I+N+ F  G   KI    G    K D    + + +P R G+H K+I+ +   +A   +V+VSC       R++  LC       + +   + L+   PVD+FPHTPH E V
Sbjct:  299 LFGEPYIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSD--TILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILP--GLLKSKEDGQSIVAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELV 499          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMA_AERHH (23S rRNA (uracil-5-)-methyltransferase rumA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rumA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.761e-23
Identity = 74/190 (38.95%), Postives = 102/190 (53.68%), Query Frame = 2
Query:  311 TLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG-LRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF-GNAFPKP--DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            +L GL+   +   F Q N   A V  +++E     L       VLDLFCG G   L LAR  + V G E     ++ A  NA+ N I+NA F + DL   GGD  G ++ +   D+V+ DP RPG   ++++ ++KL   R+VYVSCNP T ARD   L        +KG Y+L  L  +DMFPHT H+E
Sbjct:  258 SLDGLSLAFAPGDFIQVN---APVNQRMVEQALSWLEAGKDDKVLDLFCGIGNFTLPLARQAREVVGVEGELAMVARAEENARRNGINNARFYKADL---GGDIAGMSWAREGFDLVLLDPARPGA-FEVMEHVVKLSPRRVVYVSCNPVTLARDSQVL--------VKGGYRLVRLGMLDMFPHTGHLE 432          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y5020_MYCMO (Uncharacterized RNA methyltransferase MMOB5020 OS=Mycoplasma mobile GN=MMOB5020 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.218e-23
Identity = 70/198 (35.35%), Postives = 100/198 (50.51%), Query Frame = 2
Query:  275 EYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            E T   K   T+ + G+TF++  NSF+Q N   A ++Y  I +   L  +    VLDL+ G GTI L +A   K V G E    +I DA  N + N I N  F+  D+ K        F   D VI DP R G+   +I+ +LKLK  +I+Y+SCN  T A + +   H          Y+++ ++  DMFP T HIE
Sbjct:  171 EGTKQTKIYTTDKMNGITFRVGLNSFYQVNKEVANLIYNQISEFINLNEN----VLDLYSGIGTISLLIAAKAKSVTGVERNLDSIEDANFNKEFNKIKNVNFIHQDVIKYLKQNKTYF---DTVIVDPARRGLEEDIIELILKLKPQKIIYLSCNVGTQASNFNKFKHE---------YQIEFIKSYDMFPQTYHIE 352          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: Y965_PROMA (Uncharacterized RNA methyltransferase Pro_0965 OS=Prochlorococcus marinus GN=Pro_0965 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.385e-22
Identity = 85/272 (31.25%), Postives = 126/272 (46.32%), Query Frame = 2
Query:   74 GFLKHLMLRTGSDVKTGLPELMVNFVTSSYKPELLRPLVEKIS-SVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIV--LDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPK----PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            G L+H+ +R+G +      E+++ FV++    +LL P+  K++ S   VV I+                  L G+  I +    +   I + SFFQ N  +AE   K I     +  + +KIV  +D + G GT+ + LA     V G E+  +A   A RNA++NNI   TF   D+ K         PK     D +I DP R G+   LI  + KL    I Y+SCNPAT ARDL  +         +  Y + S+   D FP T H+E
Sbjct:  159 GGLRHISIRSGINTN----EVLITFVSNFSIKKLLFPITNKLNGSESNVVGILNNIQPKPNNKIFGATTEILTGRDYIYDKFCHMDILIGSTSFFQVNLVEAE---KAINCIRNIISNTNKIVRIIDAYSGIGTMSIPLASDGYRVIGIEINNEAHEIAIRNAEINNIKTITFENQDVTKY-------LPKILLPNDFLILDPPRKGLDPSLIDVITKLMPIHICYLSCNPATLARDLSLILR-------EHKYSIISITAFDFFPQTTHLE 409          
BLAST of CX069767 vs. ExPASy Swiss-Prot
Match: RUMB_SHEB8 (23S rRNA (uracil-5-)-methyltransferase rumB OS=Shewanella baltica (strain OS185) GN=rumB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.363e-22
Identity = 90/292 (30.82%), Postives = 133/292 (45.55%), Query Frame = 2
Query:    8 LSKITGRDPQLGLSPYDVHSHSGFLKHLMLRTGSDVKTGLPELMVNFVTSSYK--PELLRPLVEKISSVPEVVSIMXXXXXXXXXXXXXEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSKIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG---NAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 868
            L ++T    Q GL PY V    G LK ++L T S V+    E ++ FV  S+     + R L   ++  P++  +              +EE  L   + + E    +   I   SFFQTN   A  LY+   D        S  + DLFCG G  GL  A     + G E+  +AI+ A  +A++  + N  F+  D      DF    +A  KPD++I +P R G+   L + L +     I+Y SCNP T A+DL++         I+G Y L  +Q  D+FPHT H E
Sbjct:  111 LHRLTRFVQQAGLPPYRVDKAKGELKFILL-TRSQVRG---EYLLRFVLRSHNGIERIERELPALLAEYPQIKVVSVNIQPIHMAILEGDEEIFLTENTRLEERFNHVPLFIRPKSFFQTNPQVAAQLYQTARDWVAEFSPRS--LWDLFCGVGGFGLHCASNDITLTGIEIEAEAIACAQMSAQMMGLENVQFMALDST----DFAKGKSAADKPDLIIVNPPRRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEH---------IQG-YHLTKVQLFDLFPHTDHFE 382          
The following BLAST results are available for this feature:
BLAST of CX069767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
Y413_STRA52.283e-2529.44Uncharacterized RNA methyltransferase SAG0413 OS=S... [more]
TRM2_MOUSE2.283e-2534.48tRNA (uracil-5-)-methyltransferase homolog OS=Mus ... [more]
Y448_STRA35.086e-2529.03Uncharacterized RNA methyltransferase gbs0448 OS=S... [more]
Y1228_SYNPX6.643e-2532.86Uncharacterized RNA methyltransferase SYNW1228 OS=... [more]
TRM2_PONAB4.306e-2436.59tRNA (uracil-5-)-methyltransferase homolog OS=Pong... [more]
TRM2_HUMAN4.306e-2436.59tRNA (uracil-5-)-methyltransferase homolog OS=Homo... [more]
RUMA_AERHH4.761e-2338.9523S rRNA (uracil-5-)-methyltransferase rumA OS=Aer... [more]
Y5020_MYCMO6.218e-2335.35Uncharacterized RNA methyltransferase MMOB5020 OS=... [more]
Y965_PROMA1.385e-2231.25Uncharacterized RNA methyltransferase Pro_0965 OS=... [more]
RUMB_SHEB82.363e-2230.8223S rRNA (uracil-5-)-methyltransferase rumB OS=She... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F09-L18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069767 ID=CX069767; Name=CX069767; organism=Citrus sinensis; type=EST; length=874bp
CGTGCGGCTGTCCAAGATTACTGGGAGAGACCCACAATTAGGCCTATCTC
CTTATGATGTTCACTCACATTCTGGATTTCTCAAGCATCTAATGCTAAGA
ACTGGAAGTGATGTGAAGACTGGGCTACCCGAACTCATGGTCAATTTTGT
AACCTCATCTTACAAGCCAGAGCTGCTGAGGCCACTGGTTGAGAAAATTT
CATCTGTGCCTGAAGTGGTGAGCATTATGAATAATGTAAATACTTCTGTC
GGTAACACATCTGTCGGGGAGGAGGAGTACACTCTGTATGGGAAATCTAA
CATCACCGAGACATTAAGAGGGCTTACGTTTCAAATTTCGGCCAACTCTT
TCTTCCAGACAAATACTCACCAGGCAGAGGTTCTTTATAAACTCATTGAA
GATTGTGCTGGTCTCAGAGGTGATGGCTCCAAGATTGTGCTTGACCTATT
TTGTGGAACCGGTACCATTGGTTTAACACTTGCAAGATGGGTTAAACATG
TTTATGGATATGAAGTAGTTCCTCAAGCTATATCAGATGCTTGTAGAAAT
GCAAAGTTGAACAATATTTCTAATGCTACTTTTGTTCAAGGGGATCTCAA
CAAAATTGGTGGAGATTTTGGCAATGCTTTTCCAAAGCCAGACATTGTCA
TTTCAGATCCAAACCGCCCTGGTATGCACATGAAATTGATCAAGTTCCTA
CTAAAGCTGAAGGCACCACGCATTGTTTATGTATCGTGTAATCCGGCCAC
GTGTGCACGTGACCTTGATTACCTTTGTCATGGTGTGGGAGATCAAAACA
TAAAGGGATGTTATAAACTAAAAAGTTTACAACCAGTAGATATGTTCCCT
CACACTCCTCATATCGAATGTGTA
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