CX069760

Overview
NameCX069760
Unique NameCX069760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6305 contig Csv1_Contig6305:608..1405. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069760 vs. ExPASy Swiss-Prot
Match: PDK1_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.773e-34
Identity = 85/199 (42.71%), Postives = 123/199 (61.81%), Query Frame = -3
Query:  224 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP*ISTASKEIY 796
            I+     V+V ++  E+AR +C   Y ++P+  +        G P     YVPSHL+ MVFEL KN++RA  E + D   V PPI++ V  G ED+T+K+SD GGG+P   + ++F Y+YSTA  P  E +        +AG+GYGLPISRLYA+YF GDL++ S+EGYGTDA +++  L  +S E LP  + A+ + Y
Sbjct:  217 INPNCDVVEVIKDGYENARRLCDLYYVNSPELELEELNAKSPGQP-IQVVYVPSHLYHMVFELFKNAMRATMEHHADKG-VYPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTESIERLPVYNKAAWKHY 409          
BLAST of CX069760 vs. ExPASy Swiss-Prot
Match: PDK4_RHIFE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rhinolophus ferrumequinum GN=PDK4 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.951e-34
Identity = 81/189 (42.86%), Postives = 119/189 (62.96%), Query Frame = -3
Query:  254 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL-GDSQEPLP 796
            ID   +   V ++A E +R +C + Y ++P+  +        G+P     YVPSHLH M+FEL KN++RA  E + +++    P+ + V  G ED+TIK+SD GGG+P     ++F+Y+YSTA  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + S+ GYGTDA ++L  L  +S E LP
Sbjct:  194 IDPNCNVAAVVQDAFECSRMLCDQYYLTSPELKLTQVNGKFPGEP-IHIVYVPSHLHHMLFELFKNAMRATVE-HQENEPSLTPVEVTVVLGKEDLTIKISDRGGGVPLRITDRLFSYMYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLHLYSLSGYGTDAIIYLKALSSESVEKLP 376          
BLAST of CX069760 vs. ExPASy Swiss-Prot
Match: PDK4_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Mus musculus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.951e-34
Identity = 91/225 (40.44%), Postives = 126/225 (56.00%), Query Frame = -3
Query:  143 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGII 796
            ID     V V ++A E A+ +C + Y ++P+ N+        G P     YVPSHLH M+FEL KN++RA  E + ++     P+   V  G ED+TIK+SD GGG+P     ++F+Y YSTA  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + SM GYGTDA ++L  L            +S+ +   PV N    S F  YQ S  + D  I
Sbjct:  194 IDPNCDVVAVVQDAFECAKMLCDQYYLTSPELNLTQVNGKFPGQP-IHIVYVPSHLHHMLFELFKNAMRATVE-HQENRPSLTPVEATVVLGKEDLTIKISDRGGGVPLRITDRLFSYTYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSMSGYGTDAIIYLKAL------------SSESVEKLPVFN---KSAFKHYQMSSEADDWCI 397          
BLAST of CX069760 vs. ExPASy Swiss-Prot
Match: PDK1_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Homo sapiens GN=PDK1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.160e-34
Identity = 84/201 (41.79%), Postives = 125/201 (62.19%), Query Frame = -3
Query:  218 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP*ISTASKEIYGS 796
            I+   + ++V ++  E+AR +C   Y ++P+  +        G P     YVPSHL+ MVFEL KN++RA  E + +   V PPI++ V  G ED+T+K+SD GGG+P   + ++F Y+YSTA  P  E +        +AG+GYGLPISRLYA+YF GDL++ S+EGYGTDA +++  L  DS E LP  + A+ + Y +
Sbjct:  219 INPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQP-IQVVYVPSHLYHMVFELFKNAMRATMEHHANRG-VYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIERLPVYNKAAWKHYNT 413          
BLAST of CX069760 vs. ExPASy Swiss-Prot
Match: PDK3_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Mus musculus GN=Pdk3 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.739e-34
Identity = 83/188 (44.15%), Postives = 114/188 (60.64%), Query Frame = -3
Query:  254 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYG------DPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL-GDSQEPLP 796
            ID   +   V ++A E A+ +C + Y  AP+  +        +      YVPSHL  M+FEL KNS+RA  E + D  +  P ++ +V  G ED++IK+SD GGG+P   + ++F Y+YSTA  P  E T  A     +AG+GYGLPISRLYARYF GDL++ SMEG GTDA ++L  L  +S E LP
Sbjct:  187 IDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPNKPIQVVYVPSHLFHMLFELFKNSMRATVELHEDKKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAA----PLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLP 370          
BLAST of CX069760 vs. ExPASy Swiss-Prot
Match: PDK4_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rattus norvegicus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.501e-33
Identity = 91/225 (40.44%), Postives = 124/225 (55.11%), Query Frame = -3
Query:  143 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGII 796
            ID     V V  +A E A+ +C + Y ++P+  +        G P     YVPSHLH M+FEL KN++RA  E + ++     P+   V  G ED+TIK+SD GGG+P     ++F+Y YSTA  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + SM GYGTDA ++L  L            +S+ I   PV N    S F  YQ S  + D  I
Sbjct:  194 IDPNCDVVAVVEDAFECAKMLCDQYYLTSPELKLTQVNGKFPGQP-IHIVYVPSHLHHMLFELFKNAMRATVE-HQENRPFLTPVEATVVLGKEDLTIKISDRGGGVPLRITDRLFSYTYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSMSGYGTDAIIYLKAL------------SSESIEKLPVFN---KSAFKHYQMSSEADDWCI 397          
BLAST of CX069760 vs. ExPASy Swiss-Prot
Match: PDHK2_CAEEL (Probable [pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Caenorhabditis elegans GN=pdhk-2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.451e-33
Identity = 84/196 (42.86%), Postives = 119/196 (60.71%), Query Frame = -3
Query:  233 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP*ISTASK 796
            ID       V  +A E+AR +C R Y ++P   +        G P  +   VPSHL+ M+FEL KN++RA  E Y   D   P I++ V  G ED++IK+ D GGG+ R+ L +++ Y+YSTA  P  + T        +AGYGYGLP+SRLYARYF GDL ++SMEG+GTDA ++L  +  ++ E LP  ST+S+
Sbjct:  187 IDPACDVESVVYDAFENARFLCDRYYLTSPSMKLEMHNAVEKGKP-ISIVAVPSHLYHMMFELFKNAMRATVE-YHGVDDDLPDIKVYVVKGQEDLSIKICDRGGGVSRTILERLYNYMYSTAPPPPRDGTQ-----APLAGYGYGLPLSRLYARYFLGDLFLVSMEGHGTDACIYLKAVPVEASEVLPIYSTSSR 375          
BLAST of CX069760 vs. ExPASy Swiss-Prot
Match: BCKD_MOUSE ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Mus musculus GN=Bckdk PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.243e-29
Identity = 69/188 (36.70%), Postives = 107/188 (56.91%), Query Frame = -3
Query:  263 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAR--------NPLDENTDL--AADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQE 796
            I T++SP ++     + AR +C  +YG+AP   I G  +  FP++P  L  ++ EL+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++TA         NPL  + D+      G M G+G+GLP SR YA Y GG LQ+ S++G GTD YL L  +   +E
Sbjct:  221 ICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDIDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRINPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE 408          
BLAST of CX069760 vs. ExPASy Swiss-Prot
Match: BCKD_HUMAN ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Homo sapiens GN=BCKDK PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.243e-29
Identity = 69/188 (36.70%), Postives = 108/188 (57.45%), Query Frame = -3
Query:  263 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAR--------NPLDENTDL--AADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQE 796
            I T++SP ++     + AR +C  +YG+AP   I G  +  FP++P  L  ++ EL+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++TA         +PL  + D+   A  G M G+G+GLP SR YA Y GG LQ+ S++G GTD YL L  +   +E
Sbjct:  221 ICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGAQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE 408          
BLAST of CX069760 vs. ExPASy Swiss-Prot
Match: BCKD_RAT ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Rattus norvegicus GN=Bckdk PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.527e-29
Identity = 68/188 (36.17%), Postives = 107/188 (56.91%), Query Frame = -3
Query:  263 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAR--------NPLDENTDL--AADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQE 796
            I T++SP ++     + AR +C  +YG+AP   I G  +  FP++P  L  ++ EL+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++TA         +PL  + D+      G M G+G+GLP SR YA Y GG LQ+ S++G GTD YL L  +   +E
Sbjct:  221 ICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE 408          
The following BLAST results are available for this feature:
BLAST of CX069760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PDK1_RAT1.773e-3442.71[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_RHIFE3.951e-3442.86[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_MOUSE3.951e-3440.44[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_HUMAN5.160e-3441.79[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK3_MOUSE6.739e-3444.15[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_RAT1.501e-3340.44[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDHK2_CAEEL7.451e-3342.86Probable [pyruvate dehydrogenase [lipoamide]] kina... [more]
BCKD_MOUSE2.243e-2936.70[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_HUMAN2.243e-2936.70[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_RAT6.527e-2936.17[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F04-L8-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069760 ID=CX069760; Name=CX069760; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTGCAAAGAACTAAAATGTTTAATAATTACCAGCTGATATGA
AGAAAGAGGAGGAATATACAAGAAAGCTGCCAATTTATTAGGACCAAAAT
TGACAGCAATTCATATCTTGTACAAATTGTATAGCTTTGTTTAATAATTC
CATCAATTGAGTTACGAGAATTTTGATAACTGCTAAACTTTGATGTTGCA
TTGAAGTTCATGACAGGGCTCCCGTAAATCTCCTTAGAAGCAGTTGAAAT
TCAGGGTAAGGGTTCTTGAGAATCCCCCAAGCGCGACAAATGGAGATATG
CATCAGTTCCATATCCTTCCATGGAGATAATTTGCAAATCTCCTCCAAAA
TACCGAGCATACAAACGGCTTATTGGAAGCCCATATCCATACCCAGCCAT
TGTTCCCATGTCAGCTGCTAGATCAGTGTTTTCATCCAGAGGGTTTCTGG
CAGTGCTGTAAAGATATGTGAAAATTTTGGGAAGACCACTTCTTGGTATG
CCACCTCCCTCATCCGAAACCTTAATAGTAACATCCTCTAATCCATCGGC
AACTATTATTCGAATAGGAGGTGCAACTTTATCTGAGTCCATATAACGCT
CTTCAACAGCACGTAATGAGTTCTTAACCAACTCAAATACCATGAGATGC
AAGTGTGAAGGGACGTAAGGGAATGTAAAACTGGGATCACCGTAGATATT
AAAATCGGGTGCACTGCCATACTCCCGCAGACAAACACAACGTGCATGCT
CACTAGCATTCCTAGCAACCTGCACTGGAGACATTTTTGTGTCTATGT
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