CX069760

Overview
NameCX069760
Unique NameCX069760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6305 contig Csv1_Contig6305:608..1405. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069760 vs. ExPASy Swiss-Prot
Match: BCKD_BOVIN ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Bos taurus GN=BCKDK PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 68/188 (36.17%), Postives = 107/188 (56.91%), Query Frame = -3
Query:  263 IDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAR--------NPLDENTDL--AADMGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQE 796
            I T++SP ++     + AR +C  +YG+AP   I G  +  FP++P  L  ++ EL+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++TA         +PL  + DL      G M G+G+GLP SR YA Y GG L++ S++G GTD YL L  +   +E
Sbjct:  221 ICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDIDLVIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDLHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLRLQSLQGIGTDVYLRLRHIDGREE 408          
BLAST of CX069760 vs. ExPASy Swiss-Prot
Match: PDK_YEAST ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Saccharomyces cerevisiae GN=PKP1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 45/167 (26.95%), Postives = 88/167 (52.69%), Query Frame = -3
Query:  287 QVARNASEHARCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYST--ARNPLDENTDLAAD-MGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHL 772
            Q+ ++ S++   +C  ++ +     +   PS   TF  +P  L  ++ E+ KN+  A  +  +  + +   I ++  D  +++ +++ D GGGI       +F Y YST   ++   E+TDL  + +  ++G G+GLP+ + Y   FGG + + S+ G+GTD Y+ L
Sbjct:  219 QLIKHVSDYVNDICFVKFNTQRTPVLIHPPSQDITFTCIPPILEYIMTEVFKNAFEA--QIALGKEHMPIEINLLKPDD-DELYLRIRDHGGGITPEVEALMFNYSYSTHTQQSADSESTDLPGEQINNVSGMGFGLPMCKTYLELFGGKIDVQSLLGWGTDVYIKL 382          
The following BLAST results are available for this feature:
BLAST of CX069760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
BCKD_BOVIN1.113e-2836.17[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
PDK_YEAST4.251e-1226.95[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F04-L8-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069760 ID=CX069760; Name=CX069760; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTGCAAAGAACTAAAATGTTTAATAATTACCAGCTGATATGA
AGAAAGAGGAGGAATATACAAGAAAGCTGCCAATTTATTAGGACCAAAAT
TGACAGCAATTCATATCTTGTACAAATTGTATAGCTTTGTTTAATAATTC
CATCAATTGAGTTACGAGAATTTTGATAACTGCTAAACTTTGATGTTGCA
TTGAAGTTCATGACAGGGCTCCCGTAAATCTCCTTAGAAGCAGTTGAAAT
TCAGGGTAAGGGTTCTTGAGAATCCCCCAAGCGCGACAAATGGAGATATG
CATCAGTTCCATATCCTTCCATGGAGATAATTTGCAAATCTCCTCCAAAA
TACCGAGCATACAAACGGCTTATTGGAAGCCCATATCCATACCCAGCCAT
TGTTCCCATGTCAGCTGCTAGATCAGTGTTTTCATCCAGAGGGTTTCTGG
CAGTGCTGTAAAGATATGTGAAAATTTTGGGAAGACCACTTCTTGGTATG
CCACCTCCCTCATCCGAAACCTTAATAGTAACATCCTCTAATCCATCGGC
AACTATTATTCGAATAGGAGGTGCAACTTTATCTGAGTCCATATAACGCT
CTTCAACAGCACGTAATGAGTTCTTAACCAACTCAAATACCATGAGATGC
AAGTGTGAAGGGACGTAAGGGAATGTAAAACTGGGATCACCGTAGATATT
AAAATCGGGTGCACTGCCATACTCCCGCAGACAAACACAACGTGCATGCT
CACTAGCATTCCTAGCAACCTGCACTGGAGACATTTTTGTGTCTATGT
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