CX069757

Overview
NameCX069757
Unique NameCX069757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX069757 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.449e-12
Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = -2 
Query:    1 ILVKKANGKWRMYIDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLFSFMDAFLGYN*IPMFEKDEESTAFITN*GLFCYRVMTFGLKNAGATYQRLVNKIFKSLIRRTMEVYVDDMITKSKNPSE 375
            + V K  G  RM +D+  LNK    + +PLP I+QL+    G ++F+ +D    Y+ I + + DE   AF    G+F Y VM +G+  A A +Q  +N I   +    +  Y+D+++  SK+ SE
Sbjct:  453 MFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESE 577
The following BLAST results are available for this feature:
BLAST of CX069757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RTF22_SCHPO6.449e-1232.80Retrotransposable element Tf2 155 kDa protein type... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F03-L6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069757 ID=CX069757; Name=CX069757; organism=Citrus sinensis; type=EST; length=874bp
TTCACTCGGGTTTTTCGATTTTGTTATCATGTCGTCCACATACACCTCCA
TCGTTCTTCTAATCAACGACTTAAAGATTTTGTTCACCAACCTCTGGTAT
GTGGCACCCGCATTTTTAAGACCAAATGTCATTACCCTGTAACAGAACAA
ACCCTAGTTAGTGATGAATGCCGTGCTCTCCTCATCCTTCTCGAACATTG
GGATTTAGTTGTATCCTAAGAATGCATCCATGAAGCTAAACAGACTATGC
CCGGCTGTCGAGTCAACTAGCTGGTCGATCTTTGGTAGGGGAAAGCTATC
TTTCGGGCACGCCTTGTTAAGGTCAGTGAAATCAATGTACATCCTCCATT
TGCCATTAGCTTTCTTTACCAGAATGGCATTCGATATCCATTCGGGGTAG
TTGACTTCCTGAATGAACCCTGCATGTTAACATGAATATGTTAATAATAT
TGATTTTGATGATAACAAACTTAAATGATTTTTGATTAAAATGTTGGAGC
TATTCCTTAATAAATGAAAGCCTTATAATCATTCCAATCATTCTCTTAAA
AGATAGACTTTCAAATTAGAAAATGACTCTTGCAAAATCTGGTTTAAAAT
GTGATTCTGAAAAAAAAATGGTGAACCGTTTTTTTTCAAACGGTTAACCG
ATTAAAACCAGAGAGCAACATTTTGCCTAAGCTCTAACCGATTAAGAAAA
ATGGAAAACACAAAAAGCTGGGAAGGCTACTGGAATTTAACGGTGAACCG
TTTATTTAAACGGTTAACCGTTAAAATCCAGAATTAAAGGTTGTACTCTT
CTGGCATCATTTAACAAAACCGGATAAGGCTAAATTACTTTGCAGGTTAC
TGGAAACAAACGGCGAACCGTTTA
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