CX069755

Overview
NameCX069755
Unique NameCX069755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_ZYMMO (ATP synthase subunit a OS=Zymomonas mobilis GN=atpB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.844e-14
Identity = 48/148 (32.43%), Postives = 71/148 (47.97%), Query Frame = -1
Query:  425 FTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNI------FYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 850
            FT TSH  +T  L+   F  + +VGF R+GL F                       S+  R  SL +RLF  M AGH L+++L+ F       +        +Y +  +    +++ ++ LE  V  +QAYVF +L  +YLNDAINLH
Sbjct:  119 FTSTSHVTVTATLAAIAFGTVLVVGFTRHGLGFFKLFVPHGTPMALIWLIPGIEAFSFILRPFSLALRLFVAMTAGHVLLEVLANFIVNPPVQSASPAFLAGYYTLVGIPTFLLMIGISALEFLVCAIQAYVFALLTSLYLNDAINLH 266          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_TROHI (ATP synthase subunit a (Fragment) OS=Tropidurus hispidus GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.844e-14
Identity = 43/141 (30.50%), Postives = 75/141 (53.19%), Query Frame = -1
Query:  446 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYL 868
            G++PY+FT T+   + + L+  +++   + G +      L                     +S   R L+LG+RL AN+ AGH L++++S  A+ +L M  +      L    +++ LTGLE+ VA++QAYVFT+L+ +YL
Sbjct:   76 GLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTASLGHLLPEGTPTPLIPLLIIIETVSLFIRPLALGVRLTANLTAGHLLIQLISTAAFVLLPMMTLTA----LSTFIVLVLLTGLEIAVAMIQAYVFTLLLTLYL 212          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_PISOC (ATP synthase subunit a OS=Pisaster ochraceus GN=ATP6 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.146e-14
Identity = 50/141 (35.46%), Postives = 75/141 (53.19%), Query Frame = -1
Query:  446 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYL 868
            G++PY+FT TSH  +T  +   I++ + I+GF  +    LS                    +S   + ++LG+RL AN+ AGH L+ ++S   W +  MNN+   I  +  L I + L  LE+GVA +QAYVFT LI  YL
Sbjct:   89 GLLPYAFTATSHISLTYSIGIPIWMSVNILGFYLSFNSRLSHLVPQGTPSFLLPLMVIIETLSLFAQPIALGLRLAANLTAGHLLIYLMSTAIWVL--MNNV--AIASI-TLIIFILLFLLEIGVACIQAYVFTALIHFYL 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_GADMO (ATP synthase subunit a OS=Gadus morhua GN=mt-atp6 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.109e-14
Identity = 43/145 (29.66%), Postives = 76/145 (52.41%), Query Frame = -1
Query:  434 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAI 868
            G++PY FT T+   + LGL+  +++   ++G +    H L                     IS   R L+LG+RL AN+ AGH L+ ++S   + ++ M  +   +  +    ++L LT LE+ VA++QAYVF +L+ +YL + +
Sbjct:   87 GLMPYIFTPTTQLSLNLGLAVPLWLATVLIGMRNQPTHALGHFLPEGTPTALIPILIIMQTISLFIRPLALGVRLTANLTAGHLLIHLISSAVFVLMPMMPVVAILTAV----LLLLLTMLEVAVAMIQAYVFILLLSLYLQENV 227          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_HALGR (ATP synthase subunit a OS=Halichoerus grypus GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.366e-14
Identity = 43/143 (30.07%), Postives = 75/143 (52.45%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G++P+SFT T+   + LG++  ++ G  I GF+      L+                    IS   + ++L +RL AN+ AGH L+ ++ G    ++ ++    FI       +++ LT LE  VA++QAYVFT+L+ +YL+D
Sbjct:   86 GLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRHKTKASLAHFLPQGTPLPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLALMDISTTTAFI----TFIVLILLTILEFAVALIQAYVFTLLVSLYLHD 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_PHOVI (ATP synthase subunit a OS=Phoca vitulina GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 44/143 (30.77%), Postives = 75/143 (52.45%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G++P+SFT T+   + LG++  ++ G  I GF+      L+                    IS   + ++L +RL AN+ AGH L+ ++ G    ++ ++    FI       I++ LT LE  VA++QAYVFT+L+ +YL+D
Sbjct:   86 GLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRHKTKASLAHFLPQGTPLPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLALMDISTATAFI----TFTILILLTILEFAVALIQAYVFTLLVSLYLHD 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_BOSMU (ATP synthase subunit a OS=Bos mutus grunniens GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 44/143 (30.77%), Postives = 75/143 (52.45%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G++P+SFT T+   + LG++ S++ G  I GF+      L+                    IS   + ++L +RL AN+ AGH L+ ++ G    ++ ++     I       I++ LT LE  VA++QAYVFT+L+ +YL+D
Sbjct:   86 GLLPHSFTPTTQLSMNLGMAISLWAGAVITGFRNKTKTSLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLALMSISATTALI----TFIILILLTILEFAVAMIQAYVFTLLVSLYLHD 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_TROMO (ATP synthase subunit a (Fragment) OS=Tropidurus montanus GN=MT-ATP6 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 42/141 (29.79%), Postives = 75/141 (53.19%), Query Frame = -1
Query:  446 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYL 868
            G++PY+FT T+   + + L+  +++   + G +      L                     +S   R L+LG+RL AN+ AGH L++++S  A+ ++    +      L  L +++ LTGLE+ VA++QAYVFT+L+ +YL
Sbjct:   76 GLLPYTFTPTTQLSMNMALAAPLWLATVLTGLRNQPTASLGHLLPEGTPTPLIPLLIIIETVSLFIRPLALGVRLTANLTAGHLLIQLISTAAFVLMPTMPM----AALSTLIVLMLLTGLEIAVAMIQAYVFTLLLTLYL 212          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_SHEEP (ATP synthase subunit a OS=Ovis aries GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 44/143 (30.77%), Postives = 74/143 (51.75%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G++P+SFT T+   + LG++  ++ G  I GF+      L+                    IS   + ++L +RL AN+ AGH L+ ++ G    ++ +N     I       I++ LT LE  VA++QAYVFT+L+ +YL+D
Sbjct:   86 GLLPHSFTPTTQLSMNLGMAIPLWGGAVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLALMSINTTTALI----TFIILILLTVLEFAVAMIQAYVFTLLVSLYLHD 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_POLOR (ATP synthase subunit a OS=Polypterus ornatipinnis GN=mt-atp6 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 48/146 (32.88%), Postives = 79/146 (54.11%), Query Frame = -1
Query:  434 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLA-LTGLELGVAILQAYVFTILICIYLNDAI 868
            G++PY+FT T+   + + L+  +++   ++G +    H L+                    IS   R L+LG+RL AN+ AGH L++++S   + ML   +I   I  L   FIVLA LT LE+ VA++QAYV  +L+ +YL + +
Sbjct:   87 GLLPYTFTPTTQLSMNMALAVPLWLATVLIGMRNQPTHSLAHLLPEGTPTPLIPILIIIETISLFIRPLALGVRLTANLTAGHLLIQLISTATFVML---SIMPTIATL--TFIVLALLTILEIAVAMIQAYVLVLLLSLYLQENV 227          
The following BLAST results are available for this feature:
BLAST of CX069755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ATP6_ZYMMO1.844e-1432.43ATP synthase subunit a OS=Zymomonas mobilis GN=atp... [more]
ATP6_TROHI1.844e-1430.50ATP synthase subunit a (Fragment) OS=Tropidurus hi... [more]
ATP6_PISOC3.146e-1435.46ATP synthase subunit a OS=Pisaster ochraceus GN=AT... [more]
ATP6_GADMO4.109e-1429.66ATP synthase subunit a OS=Gadus morhua GN=mt-atp6 ... [more]
ATP6_HALGR5.366e-1430.07ATP synthase subunit a OS=Halichoerus grypus GN=MT... [more]
ATP6_PHOVI7.009e-1430.77ATP synthase subunit a OS=Phoca vitulina GN=MT-ATP... [more]
ATP6_BOSMU7.009e-1430.77ATP synthase subunit a OS=Bos mutus grunniens GN=M... [more]
ATP6_TROMO9.154e-1429.79ATP synthase subunit a (Fragment) OS=Tropidurus mo... [more]
ATP6_SHEEP9.154e-1430.77ATP synthase subunit a OS=Ovis aries GN=MT-ATP6 PE... [more]
ATP6_POLOR9.154e-1432.88ATP synthase subunit a OS=Polypterus ornatipinnis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F02-L4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069755 ID=CX069755; Name=CX069755; organism=Citrus sinensis; type=EST; length=883bp
TGCATGCTAAGATTCAAAGCTATCCATTCATCCTGAGTTCGGATCCGGCC
ACCCCTTCGGTCGATCGGTCAACTGACAGCGGTCAGCAGATAGATCGGAA
TCGCGTTAAGAAGATCATTCGATGGTTACCGTTAGTTGGGCCTCTCTTGG
AAGAGCCTCTTCACTGCACTCAGAAGACTAACCTAACTTAGTAGCCGTGC
TGGGATGGCATCGAGCAAGCAGCGGTAGCAGGGCCGGACCTAGTGCAAAA
GCAAAGAAGCAGAAGTCGAGGCAAGAGCTATACCTTCTGGAACCGGAGCA
ATAATTGCTATAAAGGAAGCAGATGCGCAGGAACGATCCCTAAAGCAAAT
ACTCGGAATGCTCCACGACTAAGTATACCCATTCAGACTCGCTTTTGTTC
AATTATAAATAAATAACCACTTTAATGGAGATTTATAGCATCATTCAAGT
AAATACAGATTAAGATCGTAAAAACATAAGCTTGTAATATAGCTACACCT
AATTCCAGGCCGGTTAATGCAAGAACTATAAATAAAGGACCAAGATCCCC
TATGAAATAGAAAATATTATTCATACATAGCATAGTCCAAGCGAACCCAC
TTAAAATCTTTACTAAACTATGACCGGCCATCATATTAGCAAATAAACGT
ATTCCTAAGCTTAATGCGCGAAAACAATAAGAGATTAGCTCAAGGAGTAC
TAAAAAAGGCGCTAACGGCAGTGGGACTCCTGCAGGTAAGAAGAAGCTTA
AAAAATGAAGCCCATTTCTTTGAAATCCCACTATAGTAATGCCAATAAAA
ATGGAAAATGAGAGACCCAAAGTAATGAGAAAATGGCTTGTAACTGTGAA
GCTATAAGGTATCATACCCTGGNAGATTACAAA
back to top