CX069755

Overview
NameCX069755
Unique NameCX069755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_HIPAM (ATP synthase subunit a OS=Hippopotamus amphibius GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.478e-13
Identity = 43/143 (30.07%), Postives = 75/143 (52.45%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G++P+SFT T+   + LG++  ++ G  I+GF+      L+                    IS   + ++L +RL AN+ AGH L+ ++ G    ++ ++     I       I++ LT LE  VA++QAYVFT+L+ +YL+D
Sbjct:   86 GLLPHSFTPTTQLSMNLGMAIPLWAGTVIMGFRNKTKISLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLMHLIGGATLALMNISMTTALI----TFIILVLLTALEFAVAMIQAYVFTLLVSLYLHD 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_DIDMA (ATP synthase subunit a OS=Didelphis marsupialis virginiana GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.478e-13
Identity = 44/143 (30.77%), Postives = 76/143 (53.15%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G++PYSFT T+   + +G++  ++ G  I+GF+      L+                    IS   + L+L +RL AN+ AGH L+ ++       L +++I   +  +    I+  LT LE+ VA++QAYVFT+L+ +YL+D
Sbjct:   86 GLLPYSFTPTTQLSMNIGMAIPLWAGTVIMGFRNKPKMSLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAGHLLIHLIGS---ATLALSSISMTVSTI-TFSILFLLTLLEIAVAMIQAYVFTLLVSLYLHD 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_BRALA (ATP synthase subunit a OS=Branchiostoma lanceolatum GN=ATP6 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.478e-13
Identity = 43/143 (30.07%), Postives = 77/143 (53.85%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G+ PY+FT T+   + LGL+  ++ G  + GF+ + +  L+                    +S   R L+LG+RL AN+ AGH L+ ++S     ++ ++ +   I     L +++ LT LE+ VA++Q YVF IL+ +YL++
Sbjct:   87 GLFPYTFTPTTQLSMNLGLAVPLWFGTVVYGFRNHPVIALAHLCPEGAPNLLVPVLVVVETLSILMRPLALGLRLTANLTAGHLLMHLISSAVLGLMELSVMLSGI----TLLLLVFLTMLEIAVALIQGYVFAILVTLYLDE 225          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_BOSIN (ATP synthase subunit a OS=Bos indicus GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.478e-13
Identity = 43/143 (30.07%), Postives = 74/143 (51.75%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G++P+SFT T+   + LG++  ++ G  I GF+      L+                    IS   + ++L +RL AN+ AGH L+ ++ G    ++ ++     I       I++ LT LE  VA++QAYVFT+L+ +YL+D
Sbjct:   86 GLLPHSFTPTTQLSMNLGMAIPLWAGAVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLALMSISTTTALI----TFTILILLTILEFAVAMIQAYVFTLLVSLYLHD 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_ONCMA (ATP synthase subunit a (Fragment) OS=Oncorhynchus masou GN=mt-atp6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 41/145 (28.28%), Postives = 76/145 (52.41%), Query Frame = -1
Query:  434 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAI 868
            G++PY+FT T+   + +GL+  +++   I+G +      L                     IS   R L+LG+RL AN+ AGH L+++++  A+ +L +      +  +    ++  LT LE+ VA++QAYVF +L+ +YL + +
Sbjct:   79 GLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPLMPTVAILTSI----VLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 219          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_MAMPR (ATP synthase subunit a OS=Mammuthus primigenius GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 44/144 (30.56%), Postives = 75/144 (52.08%), Query Frame = -1
Query:  437 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDA 868
            G++PYSF  T+   + L ++  ++ G  I+GF+      L+                    IS   R ++L +RL AN+ AGH L+ +    A T+L ++++   +        V+ LT LEL VA++QAYVF +LI +YL+++
Sbjct:   82 GLLPYSFAPTAQLTVNLSMAIPLWTGTVILGFRYKTKISLAHLLPQGTPTFLIPMIIIIETISLLIRPVTLAVRLTANITAGHLLIHLTGTAALTLLSIHSMTITV----TFITVVVLTILELAVALIQAYVFALLISLYLHES 221          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_TETNG (ATP synthase subunit a OS=Tetraodon nigroviridis GN=mt-atp6 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 41/145 (28.28%), Postives = 77/145 (53.10%), Query Frame = -1
Query:  434 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAI 868
            G++PY+FT T+   + + L+  +++   I+G ++N    L                     IS   R L+LG+RL AN+ AGH L+++++  A+ +L +      +  +    ++  LT LE+ VA++QAYVF +L+ +YL + +
Sbjct:   87 GLLPYTFTPTTQLSVNMALAVPVWLMTVIIGLRKNPTAALGHLLPEGTPVPLIPALILIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPLMPTVAILTTI----LLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_TACAC (ATP synthase subunit a OS=Tachyglossus aculeatus aculeatus GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 41/143 (28.67%), Postives = 77/143 (53.85%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G++PY+FT T+   + +G++  +++G  ++GF+      L+                    IS   + ++L +RL AN+ AGH L+ ++       L +++I   +  +    I+  LT LE+ VA++QAYVFT+L+ +YL+D
Sbjct:   86 GLLPYTFTPTTQLSMNMGMAVPLWLGTVLMGFRNKPKSSLAHFLPQGTPTPLIPMLIIIETISLFIQPVALAVRLTANITAGHLLIHLIGS---ATLALSSISLTVSTI-TFTILFLLTILEIAVALIQAYVFTLLVSLYLHD 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_SALSA (ATP synthase subunit a OS=Salmo salar GN=mt-atp6 PE=3 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 40/145 (27.59%), Postives = 76/145 (52.41%), Query Frame = -1
Query:  434 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAI 868
            G++PY+FT T+   + +GL+  +++   I+G +      L                     IS   R L+LG+RL AN+ AGH L+++++  A+ ++ +      +  +    ++  LT LE+ VA++QAYVF +L+ +YL + +
Sbjct:   87 GLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLMPIMPTVAILTSI----VLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHIUN (ATP synthase subunit a OS=Rhinoceros unicornis GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 45/144 (31.25%), Postives = 75/144 (52.08%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLAL-TGLELGVAILQAYVFTILICIYLND 868
            G++P+SFT T+   + LG++  ++ G  + GF+      L+                    IS   + ++L +RL AN+ AGH L+ ++ G    ++ ++    FI      FI L L T LE  VA++QAYVFT+L+ +YL+D
Sbjct:   86 GLLPHSFTPTTQLSMNLGMAIPLWAGTVLTGFRHKTKASLAHFLPQGTPTFLIPMLVIIETISLFIQPVALAVRLTANITAGHLLMHLIGGATLALMNISPTTSFI-----TFITLVLLTILEFAVALIQAYVFTLLVSLYLHD 224          
The following BLAST results are available for this feature:
BLAST of CX069755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ATP6_HIPAM3.478e-1330.07ATP synthase subunit a OS=Hippopotamus amphibius G... [more]
ATP6_DIDMA3.478e-1330.77ATP synthase subunit a OS=Didelphis marsupialis vi... [more]
ATP6_BRALA3.478e-1330.07ATP synthase subunit a OS=Branchiostoma lanceolatu... [more]
ATP6_BOSIN3.478e-1330.07ATP synthase subunit a OS=Bos indicus GN=MT-ATP6 P... [more]
ATP6_ONCMA4.543e-1328.28ATP synthase subunit a (Fragment) OS=Oncorhynchus ... [more]
ATP6_MAMPR4.543e-1330.56ATP synthase subunit a OS=Mammuthus primigenius GN... [more]
ATP6_TETNG7.749e-1328.28ATP synthase subunit a OS=Tetraodon nigroviridis G... [more]
ATP6_TACAC1.012e-1228.67ATP synthase subunit a OS=Tachyglossus aculeatus a... [more]
ATP6_SALSA1.012e-1227.59ATP synthase subunit a OS=Salmo salar GN=mt-atp6 P... [more]
ATP6_RHIUN1.012e-1231.25ATP synthase subunit a OS=Rhinoceros unicornis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F02-L4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069755 ID=CX069755; Name=CX069755; organism=Citrus sinensis; type=EST; length=883bp
TGCATGCTAAGATTCAAAGCTATCCATTCATCCTGAGTTCGGATCCGGCC
ACCCCTTCGGTCGATCGGTCAACTGACAGCGGTCAGCAGATAGATCGGAA
TCGCGTTAAGAAGATCATTCGATGGTTACCGTTAGTTGGGCCTCTCTTGG
AAGAGCCTCTTCACTGCACTCAGAAGACTAACCTAACTTAGTAGCCGTGC
TGGGATGGCATCGAGCAAGCAGCGGTAGCAGGGCCGGACCTAGTGCAAAA
GCAAAGAAGCAGAAGTCGAGGCAAGAGCTATACCTTCTGGAACCGGAGCA
ATAATTGCTATAAAGGAAGCAGATGCGCAGGAACGATCCCTAAAGCAAAT
ACTCGGAATGCTCCACGACTAAGTATACCCATTCAGACTCGCTTTTGTTC
AATTATAAATAAATAACCACTTTAATGGAGATTTATAGCATCATTCAAGT
AAATACAGATTAAGATCGTAAAAACATAAGCTTGTAATATAGCTACACCT
AATTCCAGGCCGGTTAATGCAAGAACTATAAATAAAGGACCAAGATCCCC
TATGAAATAGAAAATATTATTCATACATAGCATAGTCCAAGCGAACCCAC
TTAAAATCTTTACTAAACTATGACCGGCCATCATATTAGCAAATAAACGT
ATTCCTAAGCTTAATGCGCGAAAACAATAAGAGATTAGCTCAAGGAGTAC
TAAAAAAGGCGCTAACGGCAGTGGGACTCCTGCAGGTAAGAAGAAGCTTA
AAAAATGAAGCCCATTTCTTTGAAATCCCACTATAGTAATGCCAATAAAA
ATGGAAAATGAGAGACCCAAAGTAATGAGAAAATGGCTTGTAACTGTGAA
GCTATAAGGTATCATACCCTGGNAGATTACAAA
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