CX069755

Overview
NameCX069755
Unique NameCX069755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_XENLA (ATP synthase subunit a OS=Xenopus laevis GN=mt-atp6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 40/145 (27.59%), Postives = 76/145 (52.41%), Query Frame = -1
Query:  434 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAI 868
            G++PY+FT T+   + +GL+  +++   I+  +    + L                     IS   R L+LG+RL AN+ AGH L+++++  A+ +L +      +  +    ++  LT LE+ VA++QAYVF +L+ +YL + +
Sbjct:   87 GLLPYTFTPTTQLSLNMGLAVPLWLATVIMASKPTN-YALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLSIMPTVAILTSI----VLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 226          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_BALMU (ATP synthase subunit a OS=Balaenoptera musculus GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 46/144 (31.94%), Postives = 75/144 (52.08%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLAL-TGLELGVAILQAYVFTILICIYLND 868
            GM+P+SFT T+   + +G++  ++ G    GF+      L+                    IS   + ++L +RL AN+ AGH L+ ++ G    +L   ++F  I      F +LAL T LE  VA++QAYVFT+L+ +YL+D
Sbjct:   86 GMLPHSFTPTTQLSMNVGMAIPLWAGTVATGFRNKTKMSLAHLLPQGTPTFLIPMLVIIETISLFIQPVALAVRLTANITAGHLLMHLI-GETTLVLMSTSLFTAI----ITFTILALLTILEFRVALIQAYVFTLLVSLYLHD 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_PANPA (ATP synthase subunit a OS=Pan paniscus GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 40/143 (27.97%), Postives = 74/143 (51.75%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G++P+SFT T+   + L ++  ++ G  ++GF+    + L+                    IS   + ++L +RL AN+ AGH L+ ++      +  ++        L    I++ LT LE+ VA++QAYVFT+L+ +YL+D
Sbjct:   86 GLLPHSFTPTTQLSMNLAMAIPLWAGTVVMGFRFKTKNALAHFLPQGTPTPLIPMLIIIETISLFIQPMALAVRLTANITAGHLLMHLIGSATLALSTIS----LPSTLIIFTILILLTVLEIAVALIQAYVFTLLVSLYLHD 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_SQUAC (ATP synthase subunit a OS=Squalus acanthias GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 39/145 (26.90%), Postives = 73/145 (50.34%), Query Frame = -1
Query:  434 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAI 868
            G++PY+FT T+   + +  +  +++   ++G        L                     IS   R L+LG+RL AN+ AGH L+++++  A+ ++ +      +  L    I+  LT LE+ VA++QAYVF +L+ +YL + +
Sbjct:   87 GLLPYTFTPTTQLSLNMAFAIPLWLTTVLIGMLNQPTVALGHLLPEGTPTLLIPILIIIETISLFIRPLALGVRLTANLTAGHLLMQLIATAAFVLITIMPTVALLTSL----ILFLLTILEVAVAMIQAYVFVLLLSLYLQENV 227          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_PELSU (ATP synthase subunit a OS=Pelomedusa subrufa GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 38/143 (26.57%), Postives = 71/143 (49.65%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G++PY+FT T+   + LG +  +++   ++G +      L+                    IS   R L+LG+R+ AN+ AGH L+++ S    ++  M  + +         ++  LT LE+ VA++QA VF +L+ +YL +
Sbjct:   87 GLLPYTFTPTTQLSMNLGFALPMWLATLLIGLRNQPTMSLAHLLPEGTPTPLIPTLILIESISLMIRPLALGVRISANLTAGHLLMQLTSSATLSLSSMPTLSFMTA-----ILLFLLTILEMAVAMIQALVFVLLLSLYLQE 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_GORGO (ATP synthase subunit a OS=Gorilla gorilla gorilla GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 40/143 (27.97%), Postives = 71/143 (49.65%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G++P+SFT T+   + L ++  ++ G    GF+    + L+                    IS   + ++L +RL AN+ AGH L+ ++      M   N        L    +++ LT LE+ VA++QAYVFT+L+ +YL++
Sbjct:   86 GLLPHSFTPTTQLSMNLAMAIPLWAGAVTTGFRSKTKNALAHLLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLMHLIGSATLAMSTTN----LPSTLIIFTVLILLTMLEIAVALIQAYVFTLLVSLYLHE 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_CAPHI (ATP synthase subunit a OS=Capra hircus GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 40/143 (27.97%), Postives = 70/143 (48.95%), Query Frame = -1
Query:  440 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLND 868
            G++P+SFT T+   + LG++  ++ G  I GF+      L+                    IS   + ++L +RL AN+ AGH L+ ++ G    +  ++     I       I++ LT LE  +   +AYVFT+L+ +YL+D
Sbjct:   86 GLLPHSFTPTTQLSMNLGMAIPLWAGAVITGFRNKTKASLAHFYPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLALTSISPTTALI----TFIILILLTILEFELGTREAYVFTLLVSLYLHD 224          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_CHICK (ATP synthase subunit a OS=Gallus gallus GN=MT-ATP6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 42/145 (28.97%), Postives = 71/145 (48.97%), Query Frame = -1
Query:  434 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAI 868
            G++PY+FT T+   + + L+  +++   + G +      L                      S   R L+LG+RL AN+ AGH L++++S     +L M      +  L    I+  LT LE+ VA++QAYVF +L+ +YL + I
Sbjct:   87 GLLPYTFTPTTQLSMNMALALPLWLATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATIALLPMMPSISALTAL----ILFLLTILEVAVAMIQAYVFVLLLSLYLQENI 227          
The following BLAST results are available for this feature:
BLAST of CX069755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ATP6_XENLA3.256e-1127.59ATP synthase subunit a OS=Xenopus laevis GN=mt-atp... [more]
ATP6_BALMU3.256e-1131.94ATP synthase subunit a OS=Balaenoptera musculus GN... [more]
ATP6_PANPA4.252e-1127.97ATP synthase subunit a OS=Pan paniscus GN=MT-ATP6 ... [more]
ATP6_SQUAC5.553e-1126.90ATP synthase subunit a OS=Squalus acanthias GN=MT-... [more]
ATP6_PELSU5.553e-1126.57ATP synthase subunit a OS=Pelomedusa subrufa GN=MT... [more]
ATP6_GORGO7.253e-1127.97ATP synthase subunit a OS=Gorilla gorilla gorilla ... [more]
ATP6_CAPHI7.253e-1127.97ATP synthase subunit a OS=Capra hircus GN=MT-ATP6 ... [more]
ATP6_CHICK9.473e-1128.97ATP synthase subunit a OS=Gallus gallus GN=MT-ATP6... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F02-L4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069755 ID=CX069755; Name=CX069755; organism=Citrus sinensis; type=EST; length=883bp
TGCATGCTAAGATTCAAAGCTATCCATTCATCCTGAGTTCGGATCCGGCC
ACCCCTTCGGTCGATCGGTCAACTGACAGCGGTCAGCAGATAGATCGGAA
TCGCGTTAAGAAGATCATTCGATGGTTACCGTTAGTTGGGCCTCTCTTGG
AAGAGCCTCTTCACTGCACTCAGAAGACTAACCTAACTTAGTAGCCGTGC
TGGGATGGCATCGAGCAAGCAGCGGTAGCAGGGCCGGACCTAGTGCAAAA
GCAAAGAAGCAGAAGTCGAGGCAAGAGCTATACCTTCTGGAACCGGAGCA
ATAATTGCTATAAAGGAAGCAGATGCGCAGGAACGATCCCTAAAGCAAAT
ACTCGGAATGCTCCACGACTAAGTATACCCATTCAGACTCGCTTTTGTTC
AATTATAAATAAATAACCACTTTAATGGAGATTTATAGCATCATTCAAGT
AAATACAGATTAAGATCGTAAAAACATAAGCTTGTAATATAGCTACACCT
AATTCCAGGCCGGTTAATGCAAGAACTATAAATAAAGGACCAAGATCCCC
TATGAAATAGAAAATATTATTCATACATAGCATAGTCCAAGCGAACCCAC
TTAAAATCTTTACTAAACTATGACCGGCCATCATATTAGCAAATAAACGT
ATTCCTAAGCTTAATGCGCGAAAACAATAAGAGATTAGCTCAAGGAGTAC
TAAAAAAGGCGCTAACGGCAGTGGGACTCCTGCAGGTAAGAAGAAGCTTA
AAAAATGAAGCCCATTTCTTTGAAATCCCACTATAGTAATGCCAATAAAA
ATGGAAAATGAGAGACCCAAAGTAATGAGAAAATGGCTTGTAACTGTGAA
GCTATAAGGTATCATACCCTGGNAGATTACAAA
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