CX069755

Overview
NameCX069755
Unique NameCX069755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069755_ssr405 microsatellite CX069755_ssr405:405..416. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig3838 contig Csv1_Contig3838:1..883. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RICBR (ATP synthase subunit a OS=Rickettsia bellii (strain RML369-C) GN=atpB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.906e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GMIPY FTVTSH +IT  L+  +F+ +TIVGF ++G+HFLS                   L +Y  R  SL +RL ANMMAGH L+K+++ F  T++             P+ +++ L G E+ VAILQAY+FTIL C+YLNDA+NLH
Sbjct:  102 GMIPYGFTVTSHIIITFALAILVFLMVTIVGFVKHGMHFLSLFLPHGTPLWLAPLMIIIELFTYLARPASLSLRLAANMMAGHILLKVIASFVVTLMIYLKFL-------PIPLMVILIGFEIFVAILQAYIFTILSCVYLNDAVNLH 242          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RICB8 (ATP synthase subunit a OS=Rickettsia bellii (strain OSU 85-389) GN=atpB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.906e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GMIPY FTVTSH +IT  L+  +F+ +TIVGF ++G+HFLS                   L +Y  R  SL +RL ANMMAGH L+K+++ F  T++             P+ +++ L G E+ VAILQAY+FTIL C+YLNDA+NLH
Sbjct:  102 GMIPYGFTVTSHIIITFALAILVFLMVTIVGFVKHGMHFLSLFLPHGTPLWLAPLMIIIELFTYLARPASLSLRLAANMMAGHILLKVIASFVITLMIYLKFL-------PIPLMVILIGFEIFVAILQAYIFTILSCVYLNDAVNLH 242          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_PARL1 (ATP synthase subunit a OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.000e-28
Identity = 64/146 (43.84%), Postives = 92/146 (63.01%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM PY+FTVTSH ++T  L+  +F+G+T+ GF  +G  FL                    +ISY  R +S  +RLFANM+AGH ++K+ +GF  T + M  +  + G + PLF+++ALT LE  VA LQAYVFTIL C+YL+DA++
Sbjct:  113 GMFPYAFTVTSHIVVTFALAIVVFLGVTLTGFVLHGPRFLKVFVPSGVPMALLPLVVAIEIISYFSRPISHSVRLFANMLAGHIMLKVFAGFVLTFMTMG-VVGWAGMILPLFMIVALTALEFLVAALQAYVFTILTCMYLHDALH 257          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_TRIRU (ATP synthase subunit a OS=Trichophyton rubrum GN=ATP6 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.530e-28
Identity = 64/148 (43.24%), Postives = 95/148 (64.19%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            G+IPYSF+ TSHF++T  +SF++ +G TI+GFQ++ L F S                   LISY  R +SLG+RL AN+++GH L+ ILS F + ++  + IFYF+  L PL  + A +GLELG+A +Q+ VF +L C Y+ D++ LH
Sbjct:  109 GLIPYSFSSTSHFILTFFISFTVVLGATILGFQKHQLKFFSLFVPSGCPLGLLPLLVLIELISYLARNVSLGLRLSANILSGHMLLVILSDFTFKIMS-SGIFYFLIGLIPLAFIFAFSGLELGIAFIQSQVFIVLTCSYIRDSLELH 255          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RICM5 (ATP synthase subunit a OS=Rickettsia massiliae (strain Mtu5) GN=atpB PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.455e-27
Identity = 65/148 (43.92%), Postives = 91/148 (61.49%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GM PYSFT TSH ++T  L+  +F+ +TIVGF ++GL FL+                   L +Y  R +SL +RL ANMMAGH L+K+++GF  +++             P+ +++ L G E+ VAILQAY+FTIL C+YLNDAINLH
Sbjct:  102 GMTPYSFTTTSHIIVTFTLAILVFLTVTIVGFVKHGLRFLTLFLPHGTPLWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIAGFTVSLMIYLKFL-------PIPLMMILIGFEIFVAILQAYIFTILSCMYLNDAINLH 242          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RICCN (ATP synthase subunit a OS=Rickettsia conorii GN=atpB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.455e-27
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GM PYSFT TSH ++T  L+  +F+ +TIVGF ++GL FL+                   L +Y  R +SL +RL ANMMAGH L+K+++GF  +++             P+ I++ L G E+ VAILQAY+FTIL C+YLNDAINLH
Sbjct:  102 GMTPYSFTTTSHIIVTFTLAILVFLMVTIVGFVKHGLRFLTLFLPHGTPLWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIAGFTVSLMIYLKFL-------PIPIMVILIGFEIFVAILQAYIFTILSCMYLNDAINLH 242          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RICAH (ATP synthase subunit a OS=Rickettsia akari (strain Hartford) GN=atpB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.455e-27
Identity = 65/148 (43.92%), Postives = 91/148 (61.49%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GM PYSFT TSH ++T  L+  +F+ +TIVGF ++GL FL+                   L +Y  + +SL +RL ANMMAGH L+K+++GF  +++             P+ I++ L G E+ VAILQAY+FTIL C+YLNDAINLH
Sbjct:  102 GMTPYSFTATSHIIVTFTLAIIVFLTVTIVGFVKHGLRFLTLFLPYGTPLWLAPLMIVIELFTYLAKPVSLSLRLAANMMAGHVLLKVIAGFTVSLMIYLKFL-------PIPIIVILIGFEIFVAILQAYIFTILSCMYLNDAINLH 242          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_WOLWR (ATP synthase subunit a OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=atpB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.900e-27
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = -1
Query:  434 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAI 868
            G++PYSFTVTSH ++T  LS  +FI ITIVGF+  G+ FL                    L +Y  R +SL IRL ANM+AGH+++K+++GF   M    NIF+      P   ++AL G E+ VAILQAY+FTIL C+YL+DA+
Sbjct:  103 GVLPYSFTVTSHVIVTFALSMVVFIYITIVGFKERGVEFLRILLPKGTPSWLAPIIIIIKLFAYLVRPVSLSIRLAANMIAGHTIIKVIAGFIVNM----NIFF---TPAPFLFIIALIGFEVFVAILQAYIFTILTCVYLSDAV 240          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RICRS (ATP synthase subunit a OS=Rickettsia rickettsii (strain Sheila Smith) GN=atpB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.900e-27
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GM PYSFT TSH ++T  L+  +F+ +TIVGF ++GL FL+                   L +Y  R +SL +RL ANMMAGH L+K+++GF  +++             P+ I++ L G E+ VAILQAY+FTIL C+YLNDAINLH
Sbjct:  102 GMTPYSFTATSHIIVTFTLAILVFLIVTIVGFVKHGLRFLTLFLPHGTPLWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIAGFTVSLMIYLKFL-------PIPIMVILIGFEIFVAILQAYIFTILSCMYLNDAINLH 242          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RICRO (ATP synthase subunit a OS=Rickettsia rickettsii (strain Iowa) GN=atpB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.900e-27
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GM PYSFT TSH ++T  L+  +F+ +TIVGF ++GL FL+                   L +Y  R +SL +RL ANMMAGH L+K+++GF  +++             P+ I++ L G E+ VAILQAY+FTIL C+YLNDAINLH
Sbjct:  102 GMTPYSFTATSHIIVTFTLAILVFLIVTIVGFVKHGLRFLTLFLPHGTPLWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIAGFTVSLMIYLKFL-------PIPIMVILIGFEIFVAILQAYIFTILSCMYLNDAINLH 242          
The following BLAST results are available for this feature:
BLAST of CX069755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ATP6_RICBR5.906e-2945.27ATP synthase subunit a OS=Rickettsia bellii (strai... [more]
ATP6_RICB85.906e-2945.27ATP synthase subunit a OS=Rickettsia bellii (strai... [more]
ATP6_PARL15.000e-2843.84ATP synthase subunit a OS=Parvibaculum lavamentivo... [more]
ATP6_TRIRU6.530e-2843.24ATP synthase subunit a OS=Trichophyton rubrum GN=A... [more]
ATP6_RICM51.455e-2743.92ATP synthase subunit a OS=Rickettsia massiliae (st... [more]
ATP6_RICCN1.455e-2744.59ATP synthase subunit a OS=Rickettsia conorii GN=at... [more]
ATP6_RICAH1.455e-2743.92ATP synthase subunit a OS=Rickettsia akari (strain... [more]
ATP6_WOLWR1.900e-2745.52ATP synthase subunit a OS=Wolbachia sp. subsp. Dro... [more]
ATP6_RICRS1.900e-2744.59ATP synthase subunit a OS=Rickettsia rickettsii (s... [more]
ATP6_RICRO1.900e-2744.59ATP synthase subunit a OS=Rickettsia rickettsii (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F02-L4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069755 ID=CX069755; Name=CX069755; organism=Citrus sinensis; type=EST; length=883bp
TGCATGCTAAGATTCAAAGCTATCCATTCATCCTGAGTTCGGATCCGGCC
ACCCCTTCGGTCGATCGGTCAACTGACAGCGGTCAGCAGATAGATCGGAA
TCGCGTTAAGAAGATCATTCGATGGTTACCGTTAGTTGGGCCTCTCTTGG
AAGAGCCTCTTCACTGCACTCAGAAGACTAACCTAACTTAGTAGCCGTGC
TGGGATGGCATCGAGCAAGCAGCGGTAGCAGGGCCGGACCTAGTGCAAAA
GCAAAGAAGCAGAAGTCGAGGCAAGAGCTATACCTTCTGGAACCGGAGCA
ATAATTGCTATAAAGGAAGCAGATGCGCAGGAACGATCCCTAAAGCAAAT
ACTCGGAATGCTCCACGACTAAGTATACCCATTCAGACTCGCTTTTGTTC
AATTATAAATAAATAACCACTTTAATGGAGATTTATAGCATCATTCAAGT
AAATACAGATTAAGATCGTAAAAACATAAGCTTGTAATATAGCTACACCT
AATTCCAGGCCGGTTAATGCAAGAACTATAAATAAAGGACCAAGATCCCC
TATGAAATAGAAAATATTATTCATACATAGCATAGTCCAAGCGAACCCAC
TTAAAATCTTTACTAAACTATGACCGGCCATCATATTAGCAAATAAACGT
ATTCCTAAGCTTAATGCGCGAAAACAATAAGAGATTAGCTCAAGGAGTAC
TAAAAAAGGCGCTAACGGCAGTGGGACTCCTGCAGGTAAGAAGAAGCTTA
AAAAATGAAGCCCATTTCTTTGAAATCCCACTATAGTAATGCCAATAAAA
ATGGAAAATGAGAGACCCAAAGTAATGAGAAAATGGCTTGTAACTGTGAA
GCTATAAGGTATCATACCCTGGNAGATTACAAA
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