CX069755

Overview
NameCX069755
Unique NameCX069755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069755_ssr405 microsatellite CX069755_ssr405:405..416. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig3838 contig Csv1_Contig3838:1..883. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RICTY (ATP synthase subunit a OS=Rickettsia typhi GN=atpB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.528e-27
Identity = 64/148 (43.24%), Postives = 91/148 (61.49%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GM PYSFT TSH ++T  L+  IF+ +TIVGF ++G+ FL+                   L +Y  + +SL +RL ANMMAGH L+K+++GF  +++             P+ +++ L G E+ VAILQAY+FTIL C+YLNDAINLH
Sbjct:  102 GMTPYSFTATSHIIVTFTLALLIFLTVTIVGFIKHGMSFLTLFLPQGTPVWLAPLMIVIELFTYLAKPVSLSLRLAANMMAGHVLLKVIAGFTVSLMIYLKFL-------PIPLIVILIGFEIFVAILQAYIFTILSCMYLNDAINLH 242          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_NITHX (ATP synthase subunit a OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=atpB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.528e-27
Identity = 65/146 (44.52%), Postives = 89/146 (60.96%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G++PY+FT++SH ++T  L+F +F  + I GF +NGL F                     +IS+  R +S  +RLFANM+AGH  +K+ + F  TML    I    G + PL +V+ALT LEL VA LQAYVFTIL CIY+NDAI+
Sbjct:  100 GIVPYTFTISSHIIVTAALAFLVFFTVLIYGFYKNGLRFFKLFVPSGIPIVILPLVVAIEVISFLSRPVSHSVRLFANMLAGHITLKVFASFV-TMLGAMGIVGVFGAVLPLALVVALTALELLVAFLQAYVFTILTCIYINDAIH 244          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_MAGSA (ATP synthase subunit a OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.429e-27
Identity = 63/151 (41.72%), Postives = 89/151 (58.94%), Query Frame = -1
Query:  425 GMIPY---SFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GM+P     FT TSH ++T  ++  +F+G+T++GF R+G H+L                    LISY  R  SL +RLFANM  GH ++K++ GF  ++      FY I    P   + A+T LE G+A+LQAYVFTIL CIYL+DAI++H
Sbjct:  101 GMMPIPVIGFTYTSHVIVTFAMALVVFVGVTVIGFARHGTHYLRMFFPHGAPIATAVILIPIELISYFSRPFSLAVRLFANMTVGHIILKVMGGFVVSL----GAFYLIPGAVPFAFLSAITVLEFGIALLQAYVFTILSCIYLHDAIHMH 247          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_EHRCJ (ATP synthase subunit a OS=Ehrlichia canis (strain Jake) GN=atpB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.231e-26
Identity = 61/148 (41.22%), Postives = 90/148 (60.81%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            G++P  FT TSH  +T  +S  +F+ +TI+GF+  G+HFL                    L +YC R +SL IRL ANM+AGH+++K+++GF   M    NI  F+  L P+  ++ L G E+ VAILQAY+FT+L C+YL+DA+  H
Sbjct:  103 GILPLGFTATSHIAVTFAISMVVFVSVTIIGFKHQGIHFLRILLPQGTPGWLAPMMVFIELFAYCARPVSLSIRLAANMIAGHTIIKVIAGFVVKM----NI--FLTPL-PMIFIIILIGFEIFVAILQAYIFTVLTCVYLSDAVKEH 243          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_WOLPM (ATP synthase subunit a OS=Wolbachia pipientis wMel GN=atpB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.608e-26
Identity = 65/145 (44.83%), Postives = 89/145 (61.38%), Query Frame = -1
Query:  434 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAI 868
            G++PYSFTVTSH ++T  LS  +FI ITIVGF+   + FL                    L +Y  R +SL IRL ANM+AGH+++K+++GF   M    NIF+      P   ++AL G E+ VAILQAY+FTIL C+YL+DA+
Sbjct:  103 GVLPYSFTVTSHVIVTFALSMVVFIYITIVGFKEREVEFLRILLPKGTPSWLAPIIIIIKLFAYLVRPVSLSIRLAANMIAGHTIIKVIAGFIVNM----NIFF---TPAPFLFIIALIGFEVFVAILQAYIFTILTCVYLSDAV 240          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RICCK (ATP synthase subunit a OS=Rickettsia canadensis (strain McKiel) GN=atpB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26
Identity = 64/148 (43.24%), Postives = 89/148 (60.14%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GM PYSFTVTSH ++T  L+  +F+ ITIVGF ++ L FL+                   L +Y  R +SL +RL ANMMAGH L+K+++ F  +++             PL ++  L G E+ +A+LQAY+FTIL C+YLNDAINLH
Sbjct:  102 GMTPYSFTVTSHIIVTFALAILVFLTITIVGFVKHSLRFLTLFLPHGTPLWLAPLMIVIELFTYLARPISLSLRLAANMMAGHVLLKVIASFTISLMIYLKFISI-----PLMVI--LIGFEIFIAVLQAYIFTILSCMYLNDAINLH 242          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_USTMA (ATP synthase subunit a OS=Ustilago maydis GN=ATP6 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.583e-26
Identity = 64/148 (43.24%), Postives = 88/148 (59.46%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            G +PY FTV +  ++++GLS +IFIG+TI+G + + +HF S                   LISY  RA SLG+RLFAN+ AGH L+KIL+GF   +     I   +  L P  I   + GLE+ V+ +QAYVF +L C YL DAI+LH
Sbjct:  108 GNVPYGFTVATSIMVSIGLSMTIFIGVTILGLRLHKVHFFSFFVPSGTPLGLVPLLVPIELISYLARAFSLGVRLFANVTAGHVLMKILAGFLAPLFTSTFIISVLTVL-PFIIFTGIIGLEIAVSFIQAYVFCVLTCSYLKDAIDLH 254          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RICPR (ATP synthase subunit a OS=Rickettsia prowazekii GN=atpB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.583e-26
Identity = 63/148 (42.57%), Postives = 90/148 (60.81%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GM PYSFT TSH ++T  L+  IF+ +TIVGF ++G+ FL+                   L +Y  R +SL +RL ANMMAGH L+K+++ F  +++             P+ +++ L G E+ +AILQAY+FTIL C+YLNDAINLH
Sbjct:  102 GMTPYSFTATSHIIVTFTLALLIFLTVTIVGFIKHGVSFLTLFLPHGTPVWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIASFTVSLMIYLKFL-------PIPLMVILIGFEIFIAILQAYIFTILSCMYLNDAINLH 242          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_WOLTR (ATP synthase subunit a OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=atpB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.679e-26
Identity = 64/145 (44.14%), Postives = 87/145 (60.00%), Query Frame = -1
Query:  434 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAI 868
            GM+PYSFTVTSH ++T  LS  +F   TIVGF+  G++FL                    L +Y  R +SL IRL ANM+AGH+++K+++GF   M       + I    P   ++AL G E+ VAILQAY+FTIL CIYL+DA+
Sbjct:  103 GMLPYSFTVTSHVIVTFALSMIVFTYTTIVGFKEKGINFLRILLPEGIPSWLAPMMVFIKLFAYLARPISLSIRLAANMIAGHTIIKVVAGFIMNM-------HLILTPIPFLFIIALIGFEVFVAILQAYIFTILTCIYLSDAV 240          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHOPB (ATP synthase subunit a OS=Rhodopseudomonas palustris (strain BisB18) GN=atpB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.778e-25
Identity = 63/146 (43.15%), Postives = 87/146 (59.59%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G+IPY+FT+TSH ++T  L+  +F+ + I GF RNGL F                     + S+  R +S  +RLFANM+AGH  +K+ + F   +  +    YF G + PL +V+ALT LEL VA LQAYVF IL CIYLNDA++
Sbjct:  102 GIIPYTFTITSHLIVTAALALLVFLTVLIYGFYRNGLGFFKIFVPSGVPVFILPLVVFIEVFSFFLRPISHSVRLFANMLAGHIALKVFASFIPLLAGLGIAGYF-GAVLPLGMVIALTALELLVAFLQAYVFAILTCIYLNDALH 246          
The following BLAST results are available for this feature:
BLAST of CX069755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ATP6_RICTY5.528e-2743.24ATP synthase subunit a OS=Rickettsia typhi GN=atpB... [more]
ATP6_NITHX5.528e-2744.52ATP synthase subunit a OS=Nitrobacter hamburgensis... [more]
ATP6_MAGSA9.429e-2741.72ATP synthase subunit a OS=Magnetospirillum magneti... [more]
ATP6_EHRCJ1.231e-2641.22ATP synthase subunit a OS=Ehrlichia canis (strain ... [more]
ATP6_WOLPM1.608e-2644.83ATP synthase subunit a OS=Wolbachia pipientis wMel... [more]
ATP6_RICCK2.743e-2643.24ATP synthase subunit a OS=Rickettsia canadensis (s... [more]
ATP6_USTMA3.583e-2643.24ATP synthase subunit a OS=Ustilago maydis GN=ATP6 ... [more]
ATP6_RICPR3.583e-2642.57ATP synthase subunit a OS=Rickettsia prowazekii GN... [more]
ATP6_WOLTR4.679e-2644.14ATP synthase subunit a OS=Wolbachia sp. subsp. Bru... [more]
ATP6_RHOPB1.778e-2543.15ATP synthase subunit a OS=Rhodopseudomonas palustr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F02-L4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069755 ID=CX069755; Name=CX069755; organism=Citrus sinensis; type=EST; length=883bp
TGCATGCTAAGATTCAAAGCTATCCATTCATCCTGAGTTCGGATCCGGCC
ACCCCTTCGGTCGATCGGTCAACTGACAGCGGTCAGCAGATAGATCGGAA
TCGCGTTAAGAAGATCATTCGATGGTTACCGTTAGTTGGGCCTCTCTTGG
AAGAGCCTCTTCACTGCACTCAGAAGACTAACCTAACTTAGTAGCCGTGC
TGGGATGGCATCGAGCAAGCAGCGGTAGCAGGGCCGGACCTAGTGCAAAA
GCAAAGAAGCAGAAGTCGAGGCAAGAGCTATACCTTCTGGAACCGGAGCA
ATAATTGCTATAAAGGAAGCAGATGCGCAGGAACGATCCCTAAAGCAAAT
ACTCGGAATGCTCCACGACTAAGTATACCCATTCAGACTCGCTTTTGTTC
AATTATAAATAAATAACCACTTTAATGGAGATTTATAGCATCATTCAAGT
AAATACAGATTAAGATCGTAAAAACATAAGCTTGTAATATAGCTACACCT
AATTCCAGGCCGGTTAATGCAAGAACTATAAATAAAGGACCAAGATCCCC
TATGAAATAGAAAATATTATTCATACATAGCATAGTCCAAGCGAACCCAC
TTAAAATCTTTACTAAACTATGACCGGCCATCATATTAGCAAATAAACGT
ATTCCTAAGCTTAATGCGCGAAAACAATAAGAGATTAGCTCAAGGAGTAC
TAAAAAAGGCGCTAACGGCAGTGGGACTCCTGCAGGTAAGAAGAAGCTTA
AAAAATGAAGCCCATTTCTTTGAAATCCCACTATAGTAATGCCAATAAAA
ATGGAAAATGAGAGACCCAAAGTAATGAGAAAATGGCTTGTAACTGTGAA
GCTATAAGGTATCATACCCTGGNAGATTACAAA
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