CX069755

Overview
NameCX069755
Unique NameCX069755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_BRATO (ATP synthase subunit a (Fragment) OS=Brassica tournefortii GN=ATP6 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.322e-25
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = -1
Query:  425 GFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 598
            GFAWTMLCMN IFYFIG LGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:    1 GFAWTMLCMNEIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 58          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_METSE (ATP synthase subunit a OS=Metridium senile GN=ATPASE6 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.033e-25
Identity = 65/153 (42.48%), Postives = 91/153 (59.48%), Query Frame = -1
Query:  425 FVIXQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 883
            F+   G+ PY FTVT H ++TLGLSFSI IG+T+ G  +   +FLS                    +SY  RA+SLG+RL AN+ AGH L  IL+GF + ML    +F    ++ P+ I++ ++ LE  VA++QAYVF++L  IYL D I LH
Sbjct:   81 FLNILGLFPYVFTVTVHIVVTLGLSFSIVIGVTLGGLWKFKWNFLSILMPAGAPLALAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFAILAGFGFNMLTTAGVF----NIFPVLIMVFISLLEAAVAVIQAYVFSLLTTIYLADTIVLH 229          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHOP5 (ATP synthase subunit a OS=Rhodopseudomonas palustris (strain BisA53) GN=atpB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.961e-25
Identity = 62/146 (42.47%), Postives = 87/146 (59.59%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G+IPY+FT+ SH ++T  L+F +F  + I GF++NGL F                     + S+  R +S  +RLFANM+AGH  +K+ + F   +  +    YF G + PL +V+ALT LEL VA LQAYVF IL CIYLNDA++
Sbjct:  102 GIIPYTFTIASHIIVTAALAFLVFFTVLIYGFKKNGLGFFKIFVPSGVPGFILPLVVFIEVFSFFLRPISHSVRLFANMLAGHIALKVFASFIPLLAGLGIAGYF-GAVLPLGMVVALTALELLVAFLQAYVFAILTCIYLNDALH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHOPT (ATP synthase subunit a OS=Rhodopseudomonas palustris (strain TIE-1) GN=atpB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G++PY+FTV+SH ++T+ L+  +F  + I GF +NGL F                     +IS+  + +S  +RLFANM+AGH  +K+ + F   ML    +  + G + PL + +ALT LEL VA LQAYVF IL CIYLNDAI+
Sbjct:  101 GIVPYTFTVSSHLIVTVALALLVFFTVLIYGFSKNGLKFFKLFVPSGVPIYILPLVVFIEVISFFLKPVSHSVRLFANMLAGHIALKVFASFV-AMLGALGVVGWFGAVLPLGLTIALTALELLVAFLQAYVFAILTCIYLNDAIH 245          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHOPA (ATP synthase subunit a OS=Rhodopseudomonas palustris GN=atpB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G++PY+FTV+SH ++T+ L+  +F  + I GF +NGL F                     +IS+  + +S  +RLFANM+AGH  +K+ + F   ML    +  + G + PL + +ALT LEL VA LQAYVF IL CIYLNDAI+
Sbjct:  101 GIVPYTFTVSSHLIVTVALALLVFFTVLIYGFSKNGLKFFKLFVPSGVPIYILPLVVFIEVISFFLKPVSHSVRLFANMLAGHIALKVFASFV-AMLGALGVVGWFGAVLPLGLTIALTALELLVAFLQAYVFAILTCIYLNDAIH 245          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHILO (ATP synthase subunit a OS=Rhizobium loti GN=atpB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 60/146 (41.10%), Postives = 87/146 (59.59%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G+ PY FTVTSH ++T GL+  +   + + GF ++GL FL                    +IS+  R +SL +RLFANM+AGH  +K+ SGF  ++  +  +    G + PL + +ALT LEL VA LQAYVF +L C+YLNDA++
Sbjct:  105 GLFPYFFTVTSHIIVTFGLAILVIGTVIVYGFMKHGLGFLKLFVPKGVPLVMMVLVVPIEVISFVSRPISLSVRLFANMLAGHITLKVFSGFVVSLSALGAVGV-AGSILPLAMAVALTALELLVAFLQAYVFAVLTCMYLNDALH 249          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_BEII9 (ATP synthase subunit a OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=atpB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 60/146 (41.10%), Postives = 86/146 (58.90%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G++PY+FTVTS   +T GL+  +   + I G  ++G HFL                    +IS+  R +SL IRLFANM+AGH  +K++ GF   +L   +++  +  L PL +V+  T  EL VA LQAYVFTIL C+YLNDA++
Sbjct:  106 GLVPYTFTVTSQIAVTFGLAMIVIGTVVIYGLIKHGTHFLGIFAPSGVSPLLLPFMIMIEVISFISRPISLSIRLFANMLAGHITLKVMGGFVAGLLGAGSVYALVAPL-PLAMVVIFTAFELLVAFLQAYVFTILTCVYLNDAVH 250          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_SCHPO (ATP synthase subunit a OS=Schizosaccharomyces pombe GN=atp6 PE=3 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.505e-24
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = -1
Query:  425 MIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 865
            +IPY +  T+  + TLGLS SI IG TI+G Q++                          +SY  R LSLGIRL AN++AGH  + IL G  +T + +N I + IG L P+ +++A++ LE G+A +QAYVF IL C ++ND++NLH
Sbjct:  112 LIPYGYATTAQLIFTLGLSISILIGATILGLQQHKAKVFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMGLNLITFIIGFL-PITVLVAISLLEFGIAFIQAYVFAILTCGFINDSLNLH 257          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHOP2 (ATP synthase subunit a OS=Rhodopseudomonas palustris (strain HaA2) GN=atpB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.505e-24
Identity = 60/146 (41.10%), Postives = 88/146 (60.27%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G+IPY+FTV+SH ++T+ L+  +F+ + + G  +NGL F                     +IS+  + +S  +RLFANM+AGH  +K+ + F   ML    +  ++G + PL + +ALT LEL VA LQAYVF IL CIYLNDAI+
Sbjct:  101 GIIPYTFTVSSHLIVTVTLAMLVFVTVLVYGLAKNGLKFFKLFVPSGVPIYILPLVVFIEVISFFLKPVSHSVRLFANMLAGHIALKVFASFI-AMLGALGVVGWVGAVLPLGLTIALTALELLVAFLQAYVFAILTCIYLNDAIH 245          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_GRABC (ATP synthase subunit a OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.568e-24
Identity = 60/148 (40.54%), Postives = 85/148 (57.43%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            G+ PY FT TSH  +T GL+  + + +T V  + +GLHF S                   +ISY  R +SL IRLFANM+AGH + ++ + F + ++     F +   L P+ + + L G EL VA LQAYVF IL CIYL+DA++LH
Sbjct:  104 GLFPYFFTYTSHVAVTGGLAVLVIVLVTAVALRYHGLHFFSYFFPPGAPKALAPIIVPIEIISYLSRPVSLSIRLFANMVAGHVMFEVFATFMFLLIGALGTFGYFAALLPMTLNVTLVGFELLVAFLQAYVFAILTCIYLHDAVHLH 251          
The following BLAST results are available for this feature:
BLAST of CX069755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ATP6_BRATO2.322e-2596.55ATP synthase subunit a (Fragment) OS=Brassica tour... [more]
ATP6_METSE3.033e-2542.48ATP synthase subunit a OS=Metridium senile GN=ATPA... [more]
ATP6_RHOP53.961e-2542.47ATP synthase subunit a OS=Rhodopseudomonas palustr... [more]
ATP6_RHOPT5.174e-2541.78ATP synthase subunit a OS=Rhodopseudomonas palustr... [more]
ATP6_RHOPA5.174e-2541.78ATP synthase subunit a OS=Rhodopseudomonas palustr... [more]
ATP6_RHILO5.174e-2541.10ATP synthase subunit a OS=Rhizobium loti GN=atpB P... [more]
ATP6_BEII95.174e-2541.10ATP synthase subunit a OS=Beijerinckia indica subs... [more]
ATP6_SCHPO1.505e-2440.82ATP synthase subunit a OS=Schizosaccharomyces pomb... [more]
ATP6_RHOP21.505e-2441.10ATP synthase subunit a OS=Rhodopseudomonas palustr... [more]
ATP6_GRABC2.568e-2440.54ATP synthase subunit a OS=Granulibacter bethesdens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F02-L4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069755 ID=CX069755; Name=CX069755; organism=Citrus sinensis; type=EST; length=883bp
TGCATGCTAAGATTCAAAGCTATCCATTCATCCTGAGTTCGGATCCGGCC
ACCCCTTCGGTCGATCGGTCAACTGACAGCGGTCAGCAGATAGATCGGAA
TCGCGTTAAGAAGATCATTCGATGGTTACCGTTAGTTGGGCCTCTCTTGG
AAGAGCCTCTTCACTGCACTCAGAAGACTAACCTAACTTAGTAGCCGTGC
TGGGATGGCATCGAGCAAGCAGCGGTAGCAGGGCCGGACCTAGTGCAAAA
GCAAAGAAGCAGAAGTCGAGGCAAGAGCTATACCTTCTGGAACCGGAGCA
ATAATTGCTATAAAGGAAGCAGATGCGCAGGAACGATCCCTAAAGCAAAT
ACTCGGAATGCTCCACGACTAAGTATACCCATTCAGACTCGCTTTTGTTC
AATTATAAATAAATAACCACTTTAATGGAGATTTATAGCATCATTCAAGT
AAATACAGATTAAGATCGTAAAAACATAAGCTTGTAATATAGCTACACCT
AATTCCAGGCCGGTTAATGCAAGAACTATAAATAAAGGACCAAGATCCCC
TATGAAATAGAAAATATTATTCATACATAGCATAGTCCAAGCGAACCCAC
TTAAAATCTTTACTAAACTATGACCGGCCATCATATTAGCAAATAAACGT
ATTCCTAAGCTTAATGCGCGAAAACAATAAGAGATTAGCTCAAGGAGTAC
TAAAAAAGGCGCTAACGGCAGTGGGACTCCTGCAGGTAAGAAGAAGCTTA
AAAAATGAAGCCCATTTCTTTGAAATCCCACTATAGTAATGCCAATAAAA
ATGGAAAATGAGAGACCCAAAGTAATGAGAAAATGGCTTGTAACTGTGAA
GCTATAAGGTATCATACCCTGGNAGATTACAAA
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