CX069755

Overview
NameCX069755
Unique NameCX069755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069755_ssr405 microsatellite CX069755_ssr405:405..416. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig3838 contig Csv1_Contig3838:1..883. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_DICDI (ATP synthase subunit a OS=Dictyostelium discoideum GN=atp6 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.568e-24
Identity = 68/148 (45.95%), Postives = 88/148 (59.46%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            G+IP SFTVT   L+T  L+ +I IGITI GF+ +G+ FL+                   ++SY  R +SL +RLFANM+AGH L+ I+ G A   L     FYFIG L P   V+A   LELG+A LQAYVF +L  IY+ + INLH
Sbjct:  102 GLIPLSFTVTGQLLVTFTLAITIMIGITIWGFRIHGIKFLNIFVPSGIEPWLLPLLVFIEIMSYVLRPISLAVRLFANMLAGHLLIHII-GVAAIYLMQ---FYFIGIL-PWICVIAFMFLELGIAFLQAYVFVLLTLIYIANIINLH 244          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_DICCI (ATP synthase subunit a OS=Dictyostelium citrinum GN=atp6 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.568e-24
Identity = 68/148 (45.95%), Postives = 88/148 (59.46%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            G+IP SFTVT   L+T  L+ +I IGITI GF+ +G+ FL+                   ++SY  R +SL +RLFANM+AGH L+ I+ G A   L     FYFIG L P   V+A   LELG+A LQAYVF +L  IY+ + INLH
Sbjct:  102 GLIPLSFTVTGQLLVTFTLAITIMIGITIWGFRIHGIKFLNIFVPSGIEPWLLPLLVFIEIMSYVLRPISLAVRLFANMLAGHLLIHII-GVAAIYLMQ---FYFIGIL-PWICVIAFMFLELGIAFLQAYVFVLLTLIYIANIINLH 244          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHIEC (ATP synthase subunit a OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=atpB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.353e-24
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM PY FT+TS  ++T  L+  +   + I GF ++G HFL+                   +IS+  R +SL +RLFANM+AGH  +K+ +GF  ++  +  +    G + PL + +ALTGLE  VA LQAYVF +L C+YLNDAI+
Sbjct:  102 GMFPYFFTITSQIIVTFALAILVISTVLIYGFYKHGFHFLNVFVPSGVPGILLPLVVAIEIISFLSRPISLSVRLFANMLAGHITLKVFAGFVASLGALGAVGVG-GAVLPLIMTVALTGLEFLVAFLQAYVFAVLTCMYLNDAIH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_ACACA (ATP synthase subunit a OS=Acanthamoeba castellanii GN=ATP6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.353e-24
Identity = 56/146 (38.36%), Postives = 83/146 (56.85%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G++PY FT+T H + T  ++FS+F GIT++ F  N   F +                   ++SY  R  SL +RLFANM+AGH+L+ ILS F + +     +  F+    PL  ++ +  LE  +AI+QAY+F+IL CIYLND  N
Sbjct:  103 GLLPYGFTITGHIIFTFQIAFSLFFGITLINFFNNKTEFFNLFVPSGVPKPLIPFLVVIEVVSYLIRPFSLSVRLFANMLAGHTLLNILSAFIFNVFKKYALISFL----PLLFIVFIIVLEFCIAIVQAYIFSILTCIYLNDIYN 244          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_SMICU (ATP synthase subunit a OS=Smittium culisetae GN=atp6 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.720e-24
Identity = 64/148 (43.24%), Postives = 89/148 (60.14%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            G+IPY F+ T+ F + LGLS +I I +T++GF +  L + S                   L+SY  RA SLGIRL AN+ +GH L+ I+SGF +    +  +F  I    P  + +ALTGLEL VAILQAYV++IL CIY+ D++ LH
Sbjct:  105 GLIPYGFSPTALFALPLGLSVTIIISVTVIGFVKYHLKYFSVLLPSGTPLGLVPLLLVVELLSYIARAFSLGIRLAANITSGHILLNIISGFLFKTSGIALLFVII----PFTLFIALTGLELIVAILQAYVWSILTCIYIKDSLILH 248          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHIE6 (ATP synthase subunit a OS=Rhizobium etli (strain CIAT 652) GN=atpB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.720e-24
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM PY FTVTS  ++T  L+  +   + + GF ++G HFL+                   +IS+  R +SL +RLFANM+AGH  +K+ +GF  ++  +  +    G + PL + +ALTGLE  VA LQAYVF +L C+YLNDAI+
Sbjct:  102 GMFPYFFTVTSQIIVTFALAILVIGTVLVYGFYKHGFHFLNVFVPSGVPGILLPLVVAIEIISFLSRPISLSVRLFANMLAGHITLKVFAGFVASLGALGAVGVG-GAVLPLIMTVALTGLEFLVAFLQAYVFAVLTCMYLNDAIH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_BRAJA (ATP synthase subunit a OS=Bradyrhizobium japonicum GN=atpB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.720e-24
Identity = 58/146 (39.73%), Postives = 85/146 (58.22%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G+IPY+FT++SH ++T  L+  +F  + I G  +NGL F S                   ++S+  R +S  +RLFANM+AGH  +K+ +GF   +        ++G + PL + +AL  LE+ VA LQAYVF IL CIYLNDAI+
Sbjct:  101 GIIPYTFTISSHLIVTAALALLVFFTVLIYGVAKNGLKFFSIFVPHGVPGYILPLVMFIEILSFFLRPVSHSVRLFANMLAGHIALKVFAGFVAMLGFSLGALGWVGGVLPLALTVALYALEILVAFLQAYVFAILTCIYLNDAIH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_ALLMA (ATP synthase subunit a OS=Allomyces macrogynus GN=ATP6 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.720e-24
Identity = 65/153 (42.48%), Postives = 87/153 (56.86%), Query Frame = -1
Query:  428 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSG------FAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINL 868
            GMIPYSFT TSH  +TLGLS +I IG+T++GF ++ L F S                    ISY  RA SL +RL AN+ AGH L  ++S        A + L +  I   +    PL +++ L GLEL VA+LQ+YVFT+L C YL D +N+
Sbjct:  111 GMIPYSFTPTSHISVTLGLSIAIMIGVTLIGFSKHQLDFFSLFVPKGTPLALVPLLVLIEFISYSARAFSLALRLTANVSAGHCLFGVISALSVSACIAVSSLLLKGITITL----PLAVLVVLYGLELLVALLQSYVFTLLTCSYLADVVNM 259          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHILW (ATP synthase subunit a OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.471e-24
Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM PY FT+TS  ++T  L+  +   + + GF ++G HFL+                   +IS+  R +SL +RLFANM+AGH  +K+ +GF  ++  +  +    G + PL + +ALTGLE  VA LQAYVF +L C+YLNDAI+
Sbjct:  102 GMFPYFFTITSQIIVTFALAILVIGTVLVYGFYKHGFHFLNVFVPSGVPGILLPLVVSIEIISFLSRPISLSVRLFANMLAGHITLKVFAGFVASLGALGAVGVG-GAVLPLIMTVALTGLEFLVAFLQAYVFAVLTCMYLNDAIH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_MARMM (ATP synthase subunit a OS=Maricaulis maris (strain MCS10) GN=atpB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.471e-24
Identity = 60/153 (39.22%), Postives = 87/153 (56.86%), Query Frame = -1
Query:  431 GMIPY-------SFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM PY       SFT+TSH ++T+ L+  +++ + I G  +NG  FL                    +IS+  R LS  +RLFANM+AGH L+K+ +GF  T+      F ++  + PL + ++LT LE  VA LQAYVF +L CIYLNDA++
Sbjct:  103 GMFPYFPAPGAHSFTITSHLIVTVALAMLVWLTVIIYGVFKNGFGFLKLFVPSGVPIFVLPLVVVIEIISFVSRPLSHSVRLFANMLAGHILLKVFAGFVVTLAAAWGGFGYLAGIAPLAMAVSLTALEFLVAFLQAYVFAMLTCIYLNDALH 255          
The following BLAST results are available for this feature:
BLAST of CX069755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ATP6_DICDI2.568e-2445.95ATP synthase subunit a OS=Dictyostelium discoideum... [more]
ATP6_DICCI2.568e-2445.95ATP synthase subunit a OS=Dictyostelium citrinum G... [more]
ATP6_RHIEC3.353e-2440.41ATP synthase subunit a OS=Rhizobium etli (strain C... [more]
ATP6_ACACA3.353e-2438.36ATP synthase subunit a OS=Acanthamoeba castellanii... [more]
ATP6_SMICU5.720e-2443.24ATP synthase subunit a OS=Smittium culisetae GN=at... [more]
ATP6_RHIE65.720e-2440.41ATP synthase subunit a OS=Rhizobium etli (strain C... [more]
ATP6_BRAJA5.720e-2439.73ATP synthase subunit a OS=Bradyrhizobium japonicum... [more]
ATP6_ALLMA5.720e-2442.48ATP synthase subunit a OS=Allomyces macrogynus GN=... [more]
ATP6_RHILW7.471e-2439.73ATP synthase subunit a OS=Rhizobium leguminosarum ... [more]
ATP6_MARMM7.471e-2439.22ATP synthase subunit a OS=Maricaulis maris (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F02-L4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069755 ID=CX069755; Name=CX069755; organism=Citrus sinensis; type=EST; length=883bp
TGCATGCTAAGATTCAAAGCTATCCATTCATCCTGAGTTCGGATCCGGCC
ACCCCTTCGGTCGATCGGTCAACTGACAGCGGTCAGCAGATAGATCGGAA
TCGCGTTAAGAAGATCATTCGATGGTTACCGTTAGTTGGGCCTCTCTTGG
AAGAGCCTCTTCACTGCACTCAGAAGACTAACCTAACTTAGTAGCCGTGC
TGGGATGGCATCGAGCAAGCAGCGGTAGCAGGGCCGGACCTAGTGCAAAA
GCAAAGAAGCAGAAGTCGAGGCAAGAGCTATACCTTCTGGAACCGGAGCA
ATAATTGCTATAAAGGAAGCAGATGCGCAGGAACGATCCCTAAAGCAAAT
ACTCGGAATGCTCCACGACTAAGTATACCCATTCAGACTCGCTTTTGTTC
AATTATAAATAAATAACCACTTTAATGGAGATTTATAGCATCATTCAAGT
AAATACAGATTAAGATCGTAAAAACATAAGCTTGTAATATAGCTACACCT
AATTCCAGGCCGGTTAATGCAAGAACTATAAATAAAGGACCAAGATCCCC
TATGAAATAGAAAATATTATTCATACATAGCATAGTCCAAGCGAACCCAC
TTAAAATCTTTACTAAACTATGACCGGCCATCATATTAGCAAATAAACGT
ATTCCTAAGCTTAATGCGCGAAAACAATAAGAGATTAGCTCAAGGAGTAC
TAAAAAAGGCGCTAACGGCAGTGGGACTCCTGCAGGTAAGAAGAAGCTTA
AAAAATGAAGCCCATTTCTTTGAAATCCCACTATAGTAATGCCAATAAAA
ATGGAAAATGAGAGACCCAAAGTAATGAGAAAATGGCTTGTAACTGTGAA
GCTATAAGGTATCATACCCTGGNAGATTACAAA
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