CX069755

Overview
NameCX069755
Unique NameCX069755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069755_ssr405 microsatellite CX069755_ssr405:405..416. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig3838 contig Csv1_Contig3838:1..883. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_ASHGO (ATP synthase subunit a OS=Ashbya gossypii GN=ATP6 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.471e-24
Identity = 59/147 (40.14%), Postives = 85/147 (57.82%), Query Frame = -1
Query:  425 MIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 865
            MIPYSF +TSH +  + +S  I++G TI+GF  +GL F                     L+SY  R +SLG+RL AN+MAGH L+ IL G  + ++ MN + + +G L P+  +L +  LE  + I+QAYV+ IL+  YL D I LH
Sbjct:  118 MIPYSFAMTSHVVFVVSMSMIIWLGTTIIGFYTHGLKFFGLFLPTGTPLILVPLLVSIELLSYFARTISLGLRLSANIMAGHLLIVILGGLLFNLMAMNILTFLLGFL-PMIAILGIVCLEFAITIIQAYVWCILMSSYLKDTIYLH 263          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_ALLAR (ATP synthase subunit a OS=Allomyces arbuscula GN=ATP6 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.471e-24
Identity = 64/149 (42.95%), Postives = 90/149 (60.40%), Query Frame = -1
Query:  428 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWT-MLCMNNIFYFIGDLG-PLFIVLALTGLELGVAILQAYVFTILICIYLNDAINL 868
            GMIPYSFT TSH  +TLGLS +I IG+T++GF ++ L F S                    ISY  RA SL +RL AN+ AGH L  ++S  + +  + +++I      +G PL +++ L GLEL VA+LQ+YVFT+L C YL D +N+
Sbjct:  111 GMIPYSFTPTSHISVTLGLSIAIMIGVTLIGFSKHQLDFFSLFVPKGTPLALVPLLVLIEFISYSARAFSLALRLTANVSAGHCLFGVISMLSVSACMAVSSILLKGITIGLPLAVLVVLYGLELLVALLQSYVFTLLTCSYLADIVNM 259          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_METS4 (ATP synthase subunit a OS=Methylobacterium sp. (strain 4-46) GN=atpB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.274e-23
Identity = 60/146 (41.10%), Postives = 88/146 (60.27%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GMIPY+FTVTSH ++T  L+  + + + I GF  +G+HFL                    ++S+  R +SL +RLFANM+AGH  +KI +GF   +L    I+  +  L PL + +A+T LE+ VA+LQAYVF  L  IYL+DA++
Sbjct:  105 GMIPYAFTVTSHIIVTFMLALVVILTVVIYGFMAHGVHFLDLFVPPGVPGWLKPLIVAIEVVSFISRPISLSVRLFANMLAGHIALKIFAGFVPALLAA-GIWGILSPL-PLALSVAITALEMLVAVLQAYVFATLTSIYLSDALH 248          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_MESSB (ATP synthase subunit a OS=Mesorhizobium sp. (strain BNC1) GN=atpB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.664e-23
Identity = 60/146 (41.10%), Postives = 85/146 (58.22%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G+ PY FTVTSH ++T  L+  +   + + GF ++G  FL                    +IS+  R +SL +RLFANM+AGH  +K+ +GF  T L    +    G + PL + +ALTGLEL VA LQAYVF +L C+YLNDA++
Sbjct:  102 GLFPYFFTVTSHIVVTFALALLVIGTVLVYGFWKHGFGFLKLFVPEGVPGVLLPLVVLIEVISFLSRPISLSVRLFANMLAGHITLKVFAGFV-TSLGALGVAGAAGAVLPLAMTVALTGLELLVAFLQAYVFAVLTCMYLNDALH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_DINSH (ATP synthase subunit a OS=Dinoroseobacter shibae (strain DFL 12) GN=atpB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.174e-23
Identity = 61/150 (40.67%), Postives = 88/150 (58.67%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFI--VLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            G+IP SFT TSH  +T  L+ ++FI +T++GF +NG  FLS                   +ISY  R +S  IRL  NMMAGH+++K+ +GFA            +  + P+ I  V+A+ GLE+ V+ +QAYVFTIL C+YL DA++ H
Sbjct:  109 GLIPMSFTTTSHIAVTAVLALAVFITVTVIGFVKNGAGFLSLFWVASAPLALRPILAVIEIISYFVRPVSHSIRLAGNMMAGHAVLKVFAGFAQ-----------VAAVAPIAIIGVMAIYGLEVLVSAIQAYVFTILTCVYLKDALHPH 247          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_AZOC5 (ATP synthase subunit a OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.174e-23
Identity = 61/149 (40.94%), Postives = 92/149 (61.74%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLG---PLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G++PY+FT+T+H ++T  L+  +   + I GF ++G HFL                    +IS+  R +SL +RLFANM+AGH  +K+   FA+ ++ + +   F+G LG   P F+++ALT LEL VAILQAYVF +L  IYLNDA++
Sbjct:  103 GLVPYTFTITAHIVVTAALALLVIGTVVIYGFYKHGTHFLHLFVPSGVPAFLLPFIVLIEVISFLSRPISLSLRLFANMLAGHIALKV---FAFFVVGLGSAG-FLGWLGATLPFFMIVALTALELLVAILQAYVFAVLTSIYLNDAVH 247          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHOPS (ATP synthase subunit a OS=Rhodopseudomonas palustris (strain BisB5) GN=atpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.839e-23
Identity = 58/146 (39.73%), Postives = 87/146 (59.59%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G+IPY+FTV+SH ++T+ L+  +F+ +   G  +NGL F                     +IS+  + +S  +RLFANM+AGH  +K+ + F   ML       ++G + PL + +A+T LE+ VA LQAYVFTIL CIYLNDA++
Sbjct:  103 GIIPYTFTVSSHLIVTVALALLVFVIVLFYGLYKNGLKFFKLFVPSGVPVYILPLVVFIEVISFFLKPVSHSVRLFANMLAGHIALKVFASFVG-MLGALGFLGWMGAILPLGLTVAVTALEILVAFLQAYVFTILTCIYLNDAMH 247          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_BARQU (ATP synthase subunit a OS=Bartonella quintana GN=atpB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.708e-23
Identity = 57/146 (39.04%), Postives = 87/146 (59.59%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G+ PY +T+TS  +IT  L+  + + +   GF+++G+ FL                    +IS+  R +SL +RLFANM+AGH  +K+ SGF  +M+ +  I    G + PL + +A+T LE  VA LQAYVFT+L C+YLNDA++
Sbjct:  105 GLFPYFYTITSQIMITFSLAMLVILTVVGYGFRKHGIGFLKLFVPSGVPVVILPLVTMIEVISFFSRPISLSLRLFANMLAGHITLKVFSGFIVSMIELG-IMGVGGSILPLIMTVAITALEFLVAFLQAYVFTVLTCMYLNDAVH 249          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_AGRVS (ATP synthase subunit a OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=atpB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.708e-23
Identity = 60/146 (41.10%), Postives = 87/146 (59.59%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM+PY FT+TS  ++T  L+  +   + + GF ++GL FL+                   +IS+  R +SL IRLFANM+AGH  +K+ +GF  ++  +  +    G L PL + +ALTGLE  VA LQAYVF +L C+YLNDAI+
Sbjct:  102 GMMPYFFTITSQIVVTFALAIFVIGTVLVYGFYKHGLGFLNLFVPSGVPGALLLLVVPIEVISFLSRPISLSIRLFANMLAGHITLKVFAGFVASLGSLGALGVG-GALLPLAMTVALTGLEFLVAFLQAYVFAVLTCMYLNDAIH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_ROSDO (ATP synthase subunit a OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.842e-23
Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFI--VLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            G+IP SFT TSHF +T+ L+ ++F+ +TI+GF +NG  FLS                   +ISY  R +S  IRL  N+MAGH+++K+ +GFA   L           + P+ I  + A+ GLE+ V+ +QAYVFTIL C+YL DA++ H
Sbjct:  109 GLIPSSFTPTSHFAVTVVLALAVFVTVTILGFVKNGTAFLSLFWVSSAPLALRPVLAIIEIISYFVRPVSHSIRLAGNVMAGHAVIKVFAGFAALTL-----------VSPVAILGITAMYGLEVLVSFIQAYVFTILTCVYLKDALHPH 247          
The following BLAST results are available for this feature:
BLAST of CX069755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ATP6_ASHGO7.471e-2440.14ATP synthase subunit a OS=Ashbya gossypii GN=ATP6 ... [more]
ATP6_ALLAR7.471e-2442.95ATP synthase subunit a OS=Allomyces arbuscula GN=A... [more]
ATP6_METS41.274e-2341.10ATP synthase subunit a OS=Methylobacterium sp. (st... [more]
ATP6_MESSB1.664e-2341.10ATP synthase subunit a OS=Mesorhizobium sp. (strai... [more]
ATP6_DINSH2.174e-2340.67ATP synthase subunit a OS=Dinoroseobacter shibae (... [more]
ATP6_AZOC52.174e-2340.94ATP synthase subunit a OS=Azorhizobium caulinodans... [more]
ATP6_RHOPS2.839e-2339.73ATP synthase subunit a OS=Rhodopseudomonas palustr... [more]
ATP6_BARQU3.708e-2339.04ATP synthase subunit a OS=Bartonella quintana GN=a... [more]
ATP6_AGRVS3.708e-2341.10ATP synthase subunit a OS=Agrobacterium vitis (str... [more]
ATP6_ROSDO4.842e-2340.67ATP synthase subunit a OS=Roseobacter denitrifican... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F02-L4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069755 ID=CX069755; Name=CX069755; organism=Citrus sinensis; type=EST; length=883bp
TGCATGCTAAGATTCAAAGCTATCCATTCATCCTGAGTTCGGATCCGGCC
ACCCCTTCGGTCGATCGGTCAACTGACAGCGGTCAGCAGATAGATCGGAA
TCGCGTTAAGAAGATCATTCGATGGTTACCGTTAGTTGGGCCTCTCTTGG
AAGAGCCTCTTCACTGCACTCAGAAGACTAACCTAACTTAGTAGCCGTGC
TGGGATGGCATCGAGCAAGCAGCGGTAGCAGGGCCGGACCTAGTGCAAAA
GCAAAGAAGCAGAAGTCGAGGCAAGAGCTATACCTTCTGGAACCGGAGCA
ATAATTGCTATAAAGGAAGCAGATGCGCAGGAACGATCCCTAAAGCAAAT
ACTCGGAATGCTCCACGACTAAGTATACCCATTCAGACTCGCTTTTGTTC
AATTATAAATAAATAACCACTTTAATGGAGATTTATAGCATCATTCAAGT
AAATACAGATTAAGATCGTAAAAACATAAGCTTGTAATATAGCTACACCT
AATTCCAGGCCGGTTAATGCAAGAACTATAAATAAAGGACCAAGATCCCC
TATGAAATAGAAAATATTATTCATACATAGCATAGTCCAAGCGAACCCAC
TTAAAATCTTTACTAAACTATGACCGGCCATCATATTAGCAAATAAACGT
ATTCCTAAGCTTAATGCGCGAAAACAATAAGAGATTAGCTCAAGGAGTAC
TAAAAAAGGCGCTAACGGCAGTGGGACTCCTGCAGGTAAGAAGAAGCTTA
AAAAATGAAGCCCATTTCTTTGAAATCCCACTATAGTAATGCCAATAAAA
ATGGAAAATGAGAGACCCAAAGTAATGAGAAAATGGCTTGTAACTGTGAA
GCTATAAGGTATCATACCCTGGNAGATTACAAA
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