CX069755

Overview
NameCX069755
Unique NameCX069755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069755_ssr405 microsatellite CX069755_ssr405:405..416. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig3838 contig Csv1_Contig3838:1..883. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHOS5 (ATP synthase subunit a OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.842e-23
Identity = 60/147 (40.82%), Postives = 85/147 (57.82%), Query Frame = -1
Query:  434 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFI--VLALTGLELGVAILQAYVFTILICIYLNDAI 868
            G++P SFT TSH  +T+ L+  +F+G+T +GF RNG  FL                    +ISY  R +S  IRL  NMMAGH+++K+++GFA            I  + P+ +  V A+  LEL VA++QAYVFTIL C+YL DA+
Sbjct:  121 GLLPLSFTTTSHMAVTVPLALMVFVGVTALGFMRNGPGFLKMFWVTSAPLAIRPVLAVIEVISYFVRPVSHSIRLAGNMMAGHAVIKVIAGFA-----------SIAVVSPVVVGAVTAIYALELLVAVVQAYVFTILTCVYLRDAV 256          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHIL3 (ATP synthase subunit a OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=atpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.324e-23
Identity = 58/146 (39.73%), Postives = 85/146 (58.22%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM PY FTVTS  ++T  L+  +   + + GF ++G  FL+                   +IS+  R +SL +RLFANM+AGH  +K+ +GF  ++  +  +    G + PL + +ALTGLE  VA LQAYVF +L C+YLNDAI+
Sbjct:  102 GMFPYFFTVTSQIIVTAALAILVIGTVVVYGFYKHGFKFLNVFVPSGVPGILLPLVVTIEIISFLSRPISLSVRLFANMLAGHITLKVFAGFVASLGALGAVGVG-GAVLPLIMTVALTGLEFLVAFLQAYVFAVLTCMYLNDAIH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_PICCA (ATP synthase subunit a OS=Pichia canadensis GN=ATP6 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.324e-23
Identity = 56/148 (37.84%), Postives = 88/148 (59.46%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GMIPYSF +TSH +  + LS  I++G+TI+G   +GL F +                   L+SY  RA+SLG+RL AN ++GH L+ IL G  + ++ ++ + + +G + PL  +LA+  LE  +A++Q+YVF IL   Y+ D + LH
Sbjct:  110 GMIPYSFAITSHMVFIISLSVVIWLGVTIIGLYTHGLTFFALFVPAGCPLALAPLLVLIELLSYSARAISLGLRLSANTLSGHLLMVILGGLVFNLMSVSIVTFVLGFI-PLAGILAIVALEFAIAMIQSYVFAILASGYIKDGLYLH 256          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_AGRT5 (ATP synthase subunit a OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=atpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM PY FTVTS  ++T  L+  +   + + GF ++GLHF                     +IS+  R +SL +RLFANM+AGH  +K+ +GF  +M  +  +    G + PL + +A+T LE  VA LQAYVF +L C+YLNDA++
Sbjct:  102 GMFPYFFTVTSQIIVTFALACLVIGTVIVYGFYKHGLHFFGIFAPSGVPKALLPLVASIEMISFLSRPISLSVRLFANMLAGHITLKVFAGFVASMGALGALGVG-GAVLPLIMTVAMTALEFLVAFLQAYVFAVLTCMYLNDAVH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_AGRRK (ATP synthase subunit a OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=atpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23
Identity = 56/146 (38.36%), Postives = 86/146 (58.90%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM+PY +TVTS  ++T  L+  + + + + GF ++G  FL                    +IS+  R +SL +RLFANM+AGH  +K+ +GF  ++  +  +    G + PL + +ALTGLE  VA LQAYVF +L C+YLNDA++
Sbjct:  102 GMVPYFYTVTSQIIVTFALALLVILTVILYGFIKHGFGFLKLFVPQGVPGILLPLVVIIEIISFLSRPISLSVRLFANMLAGHITLKVFAGFVASLGTLGALGIG-GAILPLIMTVALTGLEFLVAFLQAYVFAVLTCMYLNDAVH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP62_OCHA4 (ATP synthase subunit a 2 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpB2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23
Identity = 57/146 (39.04%), Postives = 85/146 (58.22%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM PY+FTVTSH ++T  L+  +F+ +TI G  R+G  F                     ++SY  R +S  +RLFA M+AGH  +K+ +GF   +  +  +      L PL + +ALT LEL +A++QAYVFT+L C+YLNDA++
Sbjct:  102 GMFPYAFTVTSHIIVTFALAMLVFLTVTIYGLVRHGFRFFRLFMPAGVPVVLAPIIVPIEIMSYISRPVSHSVRLFAVMLAGHITLKVFAGFVIGLGSLGTLGMLTAVL-PLAMTVALTALELLMAVIQAYVFTMLTCMYLNDALH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_XANP2 (ATP synthase subunit a OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.079e-22
Identity = 57/146 (39.04%), Postives = 86/146 (58.90%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            G+IPY+FTVT+H ++T  ++  +   + + GF R+G HFL                    ++S+  R +SL +RLFANM+AGH  +K+ + F   +     + +F   L P F+++AL  LEL VA+LQAYVF +L  IYLNDAI+
Sbjct:  103 GLIPYTFTVTAHLIVTAAMALLVIGTVIVYGFVRHGTHFLHLFVPSGVPAFLLPFLVVIEVVSFLSRPISLSLRLFANMLAGHIALKVFAFFVVGLASAGVVGWFGATL-PFFMIVALYALELLVAMLQAYVFAVLTSIYLNDAIH 247          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_SINMW (ATP synthase subunit a OS=Sinorhizobium medicae (strain WSM419) GN=atpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.079e-22
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM+PY FTVTS  ++T  L+  +   + + GF ++G  FL                    +IS+  R +SL +RLFANM+AGH  +K+ +GF  ++     +    G + PL + +ALTGLE  VA LQAYVF +L C+YLNDA++
Sbjct:  102 GMVPYFFTVTSQIIVTFALAVFVIGTVILYGFYKHGFGFLKLFVPHGVPGALLPLVVAIEIISFLSRPISLSVRLFANMLAGHITLKVFAGFVASLSAFGALGIG-GAILPLIMTVALTGLEFLVAFLQAYVFAVLTCMYLNDAVH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_RHIME (ATP synthase subunit a OS=Rhizobium meliloti GN=atpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.079e-22
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM+PY FTVTS  ++T  L+  +   + + GF ++G  FL                    +IS+  R +SL +RLFANM+AGH  +K+ +GF  ++     +    G + PL + +ALTGLE  VA LQAYVF +L C+YLNDA++
Sbjct:  102 GMVPYFFTVTSQIIVTFALAVFVIGTVLLYGFYKHGFGFLKLFVPQGVPGALLPLVVAIEIISFLSRPISLSVRLFANMLAGHITLKVFAGFVASLSAFGALGIG-GAILPLIMTVALTGLEFLVAFLQAYVFAVLTCMYLNDAVH 246          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_HYPNA (ATP synthase subunit a OS=Hyphomonas neptunium (strain ATCC 15444) GN=atpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.079e-22
Identity = 57/146 (39.04%), Postives = 86/146 (58.90%), Query Frame = -1
Query:  431 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 868
            GM+PY+FT TSH ++T  L+ ++ + + +VG  +NGL F                     +IS+  R L+LG+RLFANM+AGH ++K+ +GF   ++    I+  +  L    + +AL  LE  VA LQAYVF IL C+YLNDA++
Sbjct:  105 GMVPYAFTTTSHIIVTGALAMTVILMVIVVGLIKNGLGFFKLFAPSGAPLPIYIILTPIEIISFLARPLTLGLRLFANMLAGHIMLKLFAGFTVMLIGAGAIYIPVAALA-FAMGVALNALEFLVAGLQAYVFAILTCVYLNDALH 249          
The following BLAST results are available for this feature:
BLAST of CX069755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ATP6_RHOS54.842e-2340.82ATP synthase subunit a OS=Rhodobacter sphaeroides ... [more]
ATP6_RHIL36.324e-2339.73ATP synthase subunit a OS=Rhizobium leguminosarum ... [more]
ATP6_PICCA6.324e-2337.84ATP synthase subunit a OS=Pichia canadensis GN=ATP... [more]
ATP6_AGRT58.260e-2339.04ATP synthase subunit a OS=Agrobacterium tumefacien... [more]
ATP6_AGRRK8.260e-2338.36ATP synthase subunit a OS=Agrobacterium radiobacte... [more]
ATP62_OCHA48.260e-2339.04ATP synthase subunit a 2 OS=Ochrobactrum anthropi ... [more]
ATP6_XANP21.079e-2239.04ATP synthase subunit a OS=Xanthobacter autotrophic... [more]
ATP6_SINMW1.079e-2239.04ATP synthase subunit a OS=Sinorhizobium medicae (s... [more]
ATP6_RHIME1.079e-2239.04ATP synthase subunit a OS=Rhizobium meliloti GN=at... [more]
ATP6_HYPNA1.079e-2239.04ATP synthase subunit a OS=Hyphomonas neptunium (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F02-L4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069755 ID=CX069755; Name=CX069755; organism=Citrus sinensis; type=EST; length=883bp
TGCATGCTAAGATTCAAAGCTATCCATTCATCCTGAGTTCGGATCCGGCC
ACCCCTTCGGTCGATCGGTCAACTGACAGCGGTCAGCAGATAGATCGGAA
TCGCGTTAAGAAGATCATTCGATGGTTACCGTTAGTTGGGCCTCTCTTGG
AAGAGCCTCTTCACTGCACTCAGAAGACTAACCTAACTTAGTAGCCGTGC
TGGGATGGCATCGAGCAAGCAGCGGTAGCAGGGCCGGACCTAGTGCAAAA
GCAAAGAAGCAGAAGTCGAGGCAAGAGCTATACCTTCTGGAACCGGAGCA
ATAATTGCTATAAAGGAAGCAGATGCGCAGGAACGATCCCTAAAGCAAAT
ACTCGGAATGCTCCACGACTAAGTATACCCATTCAGACTCGCTTTTGTTC
AATTATAAATAAATAACCACTTTAATGGAGATTTATAGCATCATTCAAGT
AAATACAGATTAAGATCGTAAAAACATAAGCTTGTAATATAGCTACACCT
AATTCCAGGCCGGTTAATGCAAGAACTATAAATAAAGGACCAAGATCCCC
TATGAAATAGAAAATATTATTCATACATAGCATAGTCCAAGCGAACCCAC
TTAAAATCTTTACTAAACTATGACCGGCCATCATATTAGCAAATAAACGT
ATTCCTAAGCTTAATGCGCGAAAACAATAAGAGATTAGCTCAAGGAGTAC
TAAAAAAGGCGCTAACGGCAGTGGGACTCCTGCAGGTAAGAAGAAGCTTA
AAAAATGAAGCCCATTTCTTTGAAATCCCACTATAGTAATGCCAATAAAA
ATGGAAAATGAGAGACCCAAAGTAATGAGAAAATGGCTTGTAACTGTGAA
GCTATAAGGTATCATACCCTGGNAGATTACAAA
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