CX069753

Overview
NameCX069753
Unique NameCX069753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_DRIGR (30S ribosomal protein S16, chloroplastic OS=Drimys granadensis GN=rps16 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.090e-27
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTK 284
            Q A+YRIVAID RS+REGRDLRKVGFYDPI NQT+ NVPAILYFL KGAQPTGTVHDIS+KA VF E+ +NQTK
Sbjct:   13 QRAIYRIVAIDVRSQREGRDLRKVGFYDPIKNQTYSNVPAILYFLEKGAQPTGTVHDISKKAEVFKELRINQTK 86          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_LACSA (30S ribosomal protein S16, chloroplastic OS=Lactuca sativa GN=rps16 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.976e-27
Identity = 62/75 (82.67%), Postives = 65/75 (86.67%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTV DI +KA VF E+  NQTKF
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVQDILKKAEVFKELCPNQTKF 87          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SOYBN (30S ribosomal protein S16, chloroplastic OS=Glycine max GN=rps16 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.111e-27
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLN-QTKFY 290
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT+LN+P ILYFL +GAQPTGTV DIS++AGVF E+S N QTKF+
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNIPVILYFLERGAQPTGTVQDISKRAGVFMELSSNQQTKFH 89          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_CALFG (30S ribosomal protein S16, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps16 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.030e-26
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTK 284
            Q A+YRIVAID RSRREGRDLRKVGFYDPINNQT+LNVP ILYFL KGAQPTGTV+DI +KA VF E+ +NQ K
Sbjct:   13 QRAIYRIVAIDVRSRREGRDLRKVGFYDPINNQTYLNVPLILYFLEKGAQPTGTVYDILKKAEVFKELQINQKK 86          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_OENEH (30S ribosomal protein S16, chloroplastic OS=Oenothera elata subsp. hookeri GN=rps16 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.462e-26
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQ 278
            Q AVYRIVAID RSRREGRDL KVGFYDPINN+T+L++P ILYFL KGAQPTGTV+DI +KAGVFTE SLNQ
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLWKVGFYDPINNKTYLDIPGILYFLEKGAQPTGTVYDILKKAGVFTEFSLNQ 84          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_ATRBE (30S ribosomal protein S16, chloroplastic OS=Atropa belladonna GN=rps16 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.713e-26
Identity = 60/75 (80.00%), Postives = 64/75 (85.33%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            Q AVYRIVAID RSRREG+DLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTV DI +KA VF E+  NQ KF
Sbjct:   13 QRAVYRIVAIDVRSRREGKDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVQDILKKAEVFKELRPNQPKF 87          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SOLTU (30S ribosomal protein S16, chloroplastic OS=Solanum tuberosum GN=rps16 PE=3 SV=4)

HSP 1 Score: 115.931 bits (289), Expect = 2.931e-25
Identity = 59/75 (78.67%), Postives = 64/75 (85.33%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            Q AVYRIVAID RSRREG+DL+KVGFYDPI NQT+LNVPAILYFL KGAQPT TV DI +KA VF E+ LNQ KF
Sbjct:   13 QRAVYRIVAIDVRSRREGKDLQKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVQDILKKAEVFKELRLNQPKF 87          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SOLLC (30S ribosomal protein S16, chloroplastic OS=Solanum lycopersicum GN=rps16 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.931e-25
Identity = 59/75 (78.67%), Postives = 64/75 (85.33%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            Q AVYRIVAID RSRREG+DL+KVGFYDPI NQT+LNVPAILYFL KGAQPT TV DI +KA VF E+ LNQ KF
Sbjct:   13 QRAVYRIVAIDVRSRREGKDLQKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVQDILKKAEVFKELRLNQPKF 87          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SOLBU (30S ribosomal protein S16, chloroplastic OS=Solanum bulbocastanum GN=rps16 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.931e-25
Identity = 59/75 (78.67%), Postives = 64/75 (85.33%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            Q AVYRIVAID RSRREG+DL+KVGFYDPI NQT+LNVPAILYFL KGAQPT TV DI +KA VF E+ LNQ KF
Sbjct:   13 QRAVYRIVAIDVRSRREGKDLQKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVQDILKKAEVFKELRLNQPKF 87          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_HELAN (30S ribosomal protein S16, chloroplastic OS=Helianthus annuus GN=rps16 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.828e-25
Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 3
Query:   78 RIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            RIVAID RSRREGRDLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTV DI +KA VF E+  NQTKF
Sbjct:   14 RIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVQDILKKAEVFKELGPNQTKF 83          
The following BLAST results are available for this feature:
BLAST of CX069753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RR16_DRIGR4.090e-2781.0830S ribosomal protein S16, chloroplastic OS=Drimys... [more]
RR16_LACSA6.976e-2782.6730S ribosomal protein S16, chloroplastic OS=Lactuc... [more]
RR16_SOYBN9.111e-2779.2230S ribosomal protein S16, chloroplastic OS=Glycin... [more]
RR16_CALFG2.030e-2679.7330S ribosomal protein S16, chloroplastic OS=Calyca... [more]
RR16_OENEH3.462e-2681.9430S ribosomal protein S16, chloroplastic OS=Oenoth... [more]
RR16_ATRBE7.713e-2680.0030S ribosomal protein S16, chloroplastic OS=Atropa... [more]
RR16_SOLTU2.931e-2578.6730S ribosomal protein S16, chloroplastic OS=Solanu... [more]
RR16_SOLLC2.931e-2578.6730S ribosomal protein S16, chloroplastic OS=Solanu... [more]
RR16_SOLBU2.931e-2578.6730S ribosomal protein S16, chloroplastic OS=Solanu... [more]
RR16_HELAN3.828e-2582.8630S ribosomal protein S16, chloroplastic OS=Helian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F01-L2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069753 ID=CX069753; Name=CX069753; organism=Citrus sinensis; type=EST; length=868bp
CCGTACGAGGAGAAAACTTCTTATACGTTTCTAGGGGGGGTACTGTTCAT
CTATATCTATCCCAATGAGCCGTTTATCGAATCGTTGCAATTGATGGTCG
ATCCCGAAGAGAAGGAAGAGATCTTCGGAAAGTGGGTTTTTATGATCCGA
TAAATAATCAAACCCATTTAAATGTTCCTGCTATTCTATATTTCCTTGCC
AAGGGCGCTCAACCTACAGGAACCGTTCATGATATTTCACAGAAAGCGGG
GGTTTTTACAGAAGTTAGTCTTAATCAAACGAAATTCTATTAAGGAATAG
AACAAAAAAGAGGGTGTGGATGCGCTTTATCTAGTTTTGTATAATTTTTT
CTTTACTATCCCCCCTTTTGTTCTATTCAGACCTATTTCTTTTCGGTTTT
TTTTTGAAGTCTTTCTCTAAAACTCTAAAAAAGTATTCTTAAAGTTTTTT
ATTTATCTAATTCTTTAGATATTATTTATTAATTTCCATATTTATTATAT
CTATTTATTAATATATAATTTGATTTGTTATTTGGATTTGAATTCAATTT
AATAAATAACCAATTAACTCTTTTTGTTTTTGTTATTGTATGTTTTTAGT
ATTTTCTCAATCTTGCTATTCAATATTCAATGTCATATTGACAATATTGT
AGTGAACAAATATAATTTTCTCATGGAGAAATGGGCCCATTTATCTCCGT
TCCATAGGTTTTGGTTGTCTTTTTTTTATGTTCAAAATCGATTAGAAATT
TTTTTGATTCGAGTTCTTGCTAATTTCATTTTTTGATTCCGTTTTGAAAT
TCCTTTTTTTTTTTTATTTTTTTTTATTCCGATTCTATCTACCCATTCGA
ATTATTTGGGTTGCTAAC
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