CX069753
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_TOBAC (30S ribosomal protein S16, chloroplastic OS=Nicotiana tabacum GN=rps16 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.528e-25 Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQT 281 Q AVYRIVAID RSRREG+DLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTV DI +KA VF E+ NQ+ Sbjct: 13 QRAVYRIVAIDVRSRREGKDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVQDILKKAEVFKELRPNQS 85
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_NICTO (30S ribosomal protein S16, chloroplastic OS=Nicotiana tomentosiformis GN=rps16 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.528e-25 Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQT 281 Q AVYRIVAID RSRREG+DLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTV DI +KA VF E+ NQ+ Sbjct: 13 QRAVYRIVAIDVRSRREGKDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVQDILKKAEVFKELRPNQS 85
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_NICSY (30S ribosomal protein S16, chloroplastic OS=Nicotiana sylvestris GN=rps16 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.528e-25 Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQT 281 Q AVYRIVAID RSRREG+DLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTV DI +KA VF E+ NQ+ Sbjct: 13 QRAVYRIVAIDVRSRREGKDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVQDILKKAEVFKELRPNQS 85
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_COFAR (30S ribosomal protein S16, chloroplastic OS=Coffea arabica GN=rps16 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24 Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287 Q AV+RIVAID RSRREG+DL+KVGFYDPI NQT+LNV AILYFL +GAQPTGTV DI +KAGVF E+ NQ KF Sbjct: 13 QRAVFRIVAIDVRSRREGKDLQKVGFYDPIKNQTYLNVTAILYFLEQGAQPTGTVQDIFKKAGVFKELRPNQMKF 87
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SPIOL (30S ribosomal protein S16, chloroplastic OS=Spinacia oleracea GN=rps16 PE=1 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24 Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287 Q AVYRIVAID RSRREGRDL+KVGFYDPI +QT+LNVPAIL FL KGAQPT TV+DI ++A VF E LNQTKF Sbjct: 13 QRAVYRIVAIDVRSRREGRDLQKVGFYDPIKSQTYLNVPAILDFLEKGAQPTETVYDILKRAEVFKEFRLNQTKF 87
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_EUCGG (30S ribosomal protein S16, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps16 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23 Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 3 Query: 72 VYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGV 254 VYRIVAID RSRREGRDLRKVGFYDPINNQT+LN+PAIL+FL KGAQPTGTV+DI +KAGV Sbjct: 15 VYRIVAIDVRSRREGRDLRKVGFYDPINNQTYLNIPAILFFLEKGAQPTGTVYDILKKAGV 75
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SILLA (30S ribosomal protein S16, chloroplastic OS=Silene latifolia GN=rps16 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.608e-23 Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287 Q AVYRIVAID RSRREGRDL+KVGFYDPI NQT+LNVPAIL F+ KGAQPT TV+DI ++A VF E QTKF Sbjct: 13 QRAVYRIVAIDVRSRREGRDLQKVGFYDPIKNQTYLNVPAILDFIQKGAQPTETVYDILKRAEVFKEFQFKQTKF 87
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_LOTJA (30S ribosomal protein S16, chloroplastic OS=Lotus japonicus GN=rps16 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.982e-23 Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEV 266 Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT+LN+P IL FL +GAQPTGTV DIS+KAG F ++ Sbjct: 13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNIPVILNFLEQGAQPTGTVQDISKKAGFFMDL 80
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_PELHO (30S ribosomal protein S16, chloroplastic OS=Pelargonium hortorum GN=rps16 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.042e-22 Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 3 Query: 69 AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSL 272 AVYRIVAID RSRREGRDLRKVG YDPINN+THLNVPAILYF+ +GAQPT TV+D+ +KAGV + + Sbjct: 15 AVYRIVAIDVRSRREGRDLRKVGLYDPINNKTHLNVPAILYFIERGAQPTRTVNDLLKKAGVLKDTGI 82
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_PANGI (30S ribosomal protein S16, chloroplastic OS=Panax ginseng GN=rps16 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.361e-22 Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVF 257 Q AVYRIVAID RSRREGRDLRKVGFYDPI NQ+ LNVPAILYFL KGAQPTGTV DI +KA VF Sbjct: 13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQSCLNVPAILYFLEKGAQPTGTVRDILKKAEVF 77 The following BLAST results are available for this feature:
BLAST of CX069753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069753 ID=CX069753; Name=CX069753; organism=Citrus sinensis; type=EST; length=868bpback to top |