CX069753

Overview
NameCX069753
Unique NameCX069753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_TOBAC (30S ribosomal protein S16, chloroplastic OS=Nicotiana tabacum GN=rps16 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.528e-25
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQT 281
            Q AVYRIVAID RSRREG+DLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTV DI +KA VF E+  NQ+
Sbjct:   13 QRAVYRIVAIDVRSRREGKDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVQDILKKAEVFKELRPNQS 85          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_NICTO (30S ribosomal protein S16, chloroplastic OS=Nicotiana tomentosiformis GN=rps16 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.528e-25
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQT 281
            Q AVYRIVAID RSRREG+DLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTV DI +KA VF E+  NQ+
Sbjct:   13 QRAVYRIVAIDVRSRREGKDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVQDILKKAEVFKELRPNQS 85          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_NICSY (30S ribosomal protein S16, chloroplastic OS=Nicotiana sylvestris GN=rps16 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.528e-25
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQT 281
            Q AVYRIVAID RSRREG+DLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTV DI +KA VF E+  NQ+
Sbjct:   13 QRAVYRIVAIDVRSRREGKDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVQDILKKAEVFKELRPNQS 85          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_COFAR (30S ribosomal protein S16, chloroplastic OS=Coffea arabica GN=rps16 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            Q AV+RIVAID RSRREG+DL+KVGFYDPI NQT+LNV AILYFL +GAQPTGTV DI +KAGVF E+  NQ KF
Sbjct:   13 QRAVFRIVAIDVRSRREGKDLQKVGFYDPIKNQTYLNVTAILYFLEQGAQPTGTVQDIFKKAGVFKELRPNQMKF 87          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SPIOL (30S ribosomal protein S16, chloroplastic OS=Spinacia oleracea GN=rps16 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            Q AVYRIVAID RSRREGRDL+KVGFYDPI +QT+LNVPAIL FL KGAQPT TV+DI ++A VF E  LNQTKF
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLQKVGFYDPIKSQTYLNVPAILDFLEKGAQPTETVYDILKRAEVFKEFRLNQTKF 87          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_EUCGG (30S ribosomal protein S16, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps16 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 3
Query:   72 VYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGV 254
            VYRIVAID RSRREGRDLRKVGFYDPINNQT+LN+PAIL+FL KGAQPTGTV+DI +KAGV
Sbjct:   15 VYRIVAIDVRSRREGRDLRKVGFYDPINNQTYLNIPAILFFLEKGAQPTGTVYDILKKAGV 75          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SILLA (30S ribosomal protein S16, chloroplastic OS=Silene latifolia GN=rps16 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.608e-23
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            Q AVYRIVAID RSRREGRDL+KVGFYDPI NQT+LNVPAIL F+ KGAQPT TV+DI ++A VF E    QTKF
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLQKVGFYDPIKNQTYLNVPAILDFIQKGAQPTETVYDILKRAEVFKEFQFKQTKF 87          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_LOTJA (30S ribosomal protein S16, chloroplastic OS=Lotus japonicus GN=rps16 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.982e-23
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEV 266
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT+LN+P IL FL +GAQPTGTV DIS+KAG F ++
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNIPVILNFLEQGAQPTGTVQDISKKAGFFMDL 80          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_PELHO (30S ribosomal protein S16, chloroplastic OS=Pelargonium hortorum GN=rps16 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.042e-22
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 3
Query:   69 AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSL 272
            AVYRIVAID RSRREGRDLRKVG YDPINN+THLNVPAILYF+ +GAQPT TV+D+ +KAGV  +  +
Sbjct:   15 AVYRIVAIDVRSRREGRDLRKVGLYDPINNKTHLNVPAILYFIERGAQPTRTVNDLLKKAGVLKDTGI 82          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_PANGI (30S ribosomal protein S16, chloroplastic OS=Panax ginseng GN=rps16 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.361e-22
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVF 257
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQ+ LNVPAILYFL KGAQPTGTV DI +KA VF
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQSCLNVPAILYFLEKGAQPTGTVRDILKKAEVF 77          
The following BLAST results are available for this feature:
BLAST of CX069753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RR16_TOBAC8.528e-2579.4530S ribosomal protein S16, chloroplastic OS=Nicoti... [more]
RR16_NICTO8.528e-2579.4530S ribosomal protein S16, chloroplastic OS=Nicoti... [more]
RR16_NICSY8.528e-2579.4530S ribosomal protein S16, chloroplastic OS=Nicoti... [more]
RR16_COFAR1.900e-2476.0030S ribosomal protein S16, chloroplastic OS=Coffea... [more]
RR16_SPIOL3.240e-2477.3330S ribosomal protein S16, chloroplastic OS=Spinac... [more]
RR16_EUCGG1.231e-2386.8930S ribosomal protein S16, chloroplastic OS=Eucaly... [more]
RR16_SILLA1.608e-2374.6730S ribosomal protein S16, chloroplastic OS=Silene... [more]
RR16_LOTJA7.982e-2377.9430S ribosomal protein S16, chloroplastic OS=Lotus ... [more]
RR16_PELHO1.042e-2275.0030S ribosomal protein S16, chloroplastic OS=Pelarg... [more]
RR16_PANGI1.361e-2284.6230S ribosomal protein S16, chloroplastic OS=Panax ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F01-L2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069753 ID=CX069753; Name=CX069753; organism=Citrus sinensis; type=EST; length=868bp
CCGTACGAGGAGAAAACTTCTTATACGTTTCTAGGGGGGGTACTGTTCAT
CTATATCTATCCCAATGAGCCGTTTATCGAATCGTTGCAATTGATGGTCG
ATCCCGAAGAGAAGGAAGAGATCTTCGGAAAGTGGGTTTTTATGATCCGA
TAAATAATCAAACCCATTTAAATGTTCCTGCTATTCTATATTTCCTTGCC
AAGGGCGCTCAACCTACAGGAACCGTTCATGATATTTCACAGAAAGCGGG
GGTTTTTACAGAAGTTAGTCTTAATCAAACGAAATTCTATTAAGGAATAG
AACAAAAAAGAGGGTGTGGATGCGCTTTATCTAGTTTTGTATAATTTTTT
CTTTACTATCCCCCCTTTTGTTCTATTCAGACCTATTTCTTTTCGGTTTT
TTTTTGAAGTCTTTCTCTAAAACTCTAAAAAAGTATTCTTAAAGTTTTTT
ATTTATCTAATTCTTTAGATATTATTTATTAATTTCCATATTTATTATAT
CTATTTATTAATATATAATTTGATTTGTTATTTGGATTTGAATTCAATTT
AATAAATAACCAATTAACTCTTTTTGTTTTTGTTATTGTATGTTTTTAGT
ATTTTCTCAATCTTGCTATTCAATATTCAATGTCATATTGACAATATTGT
AGTGAACAAATATAATTTTCTCATGGAGAAATGGGCCCATTTATCTCCGT
TCCATAGGTTTTGGTTGTCTTTTTTTTATGTTCAAAATCGATTAGAAATT
TTTTTGATTCGAGTTCTTGCTAATTTCATTTTTTGATTCCGTTTTGAAAT
TCCTTTTTTTTTTTTATTTTTTTTTATTCCGATTCTATCTACCCATTCGA
ATTATTTGGGTTGCTAAC
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