CX069753

Overview
NameCX069753
Unique NameCX069753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_AGRST (30S ribosomal protein S16, chloroplastic OS=Agrostis stolonifera GN=rps16 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.778e-22
Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTE 263
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT LNVPAILYFL KGAQPT TV+DI +KA +F E
Sbjct:   13 QQAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVYDILRKAELFKE 79          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_DAUCA (30S ribosomal protein S16, chloroplastic OS=Daucus carota GN=rps16 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.322e-22
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVF 257
            Q AVYRIVAID RSRREGRDLR VGFYDPI NQ++LNVPAILYFL KGAQPTGTV D+ +KA VF
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLRNVGFYDPIKNQSYLNVPAILYFLEKGAQPTGTVRDLLKKAEVF 77          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_WHEAT (30S ribosomal protein S16, chloroplastic OS=Triticum aestivum GN=rps16 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.033e-22
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTE 263
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT LNVPAILYFL KGAQPT TV+DI +KA  F E
Sbjct:   13 QQAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVYDILRKAEFFKE 79          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_HORVU (30S ribosomal protein S16, chloroplastic OS=Hordeum vulgare GN=rps16 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.033e-22
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTE 263
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT LNVPAILYFL KGAQPT TV+DI +KA  F E
Sbjct:   13 QQAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVYDILRKAEFFKE 79          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_ORYSJ (30S ribosomal protein S16, chloroplastic OS=Oryza sativa subsp. japonica GN=rps16 PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22
Identity = 55/67 (82.09%), Postives = 56/67 (83.58%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTE 263
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT LNVPAILYFL KGAQPT TV DI +KA  F E
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVSDILRKAEFFKE 79          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_ORYSI (30S ribosomal protein S16, chloroplastic OS=Oryza sativa subsp. indica GN=rps16 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22
Identity = 55/67 (82.09%), Postives = 56/67 (83.58%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTE 263
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT LNVPAILYFL KGAQPT TV DI +KA  F E
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVSDILRKAEFFKE 79          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_ORYSA (30S ribosomal protein S16, chloroplastic OS=Oryza sativa GN=rps16 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22
Identity = 55/67 (82.09%), Postives = 56/67 (83.58%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTE 263
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT LNVPAILYFL KGAQPT TV DI +KA  F E
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVSDILRKAEFFKE 79          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_ORYNI (30S ribosomal protein S16, chloroplastic OS=Oryza nivara GN=rps16 PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22
Identity = 55/67 (82.09%), Postives = 56/67 (83.58%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTE 263
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT LNVPAILYFL KGAQPT TV DI +KA  F E
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVSDILRKAEFFKE 79          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SORBI (30S ribosomal protein S16, chloroplastic OS=Sorghum bicolor GN=rps16 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.825e-22
Identity = 53/67 (79.10%), Postives = 57/67 (85.07%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTE 263
            Q A+YRIVAID RSRREGRDLRKVGFYDPI NQT LNVPAILYFL KGAQPT TV+DI +KA  F +
Sbjct:   13 QQAIYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVYDILRKAEFFKD 79          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SACOF (30S ribosomal protein S16, chloroplastic OS=Saccharum officinarum GN=rps16 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.825e-22
Identity = 53/67 (79.10%), Postives = 57/67 (85.07%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTE 263
            Q A+YRIVAID RSRREGRDLRKVGFYDPI NQT LNVPAILYFL KGAQPT TV+DI +KA  F +
Sbjct:   13 QQAIYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVYDILRKAEFFKD 79          
The following BLAST results are available for this feature:
BLAST of CX069753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RR16_AGRST1.778e-2282.0930S ribosomal protein S16, chloroplastic OS=Agrost... [more]
RR16_DAUCA2.322e-2281.5430S ribosomal protein S16, chloroplastic OS=Daucus... [more]
RR16_WHEAT3.033e-2282.0930S ribosomal protein S16, chloroplastic OS=Tritic... [more]
RR16_HORVU3.033e-2282.0930S ribosomal protein S16, chloroplastic OS=Hordeu... [more]
RR16_ORYSJ6.757e-2282.0930S ribosomal protein S16, chloroplastic OS=Oryza ... [more]
RR16_ORYSI6.757e-2282.0930S ribosomal protein S16, chloroplastic OS=Oryza ... [more]
RR16_ORYSA6.757e-2282.0930S ribosomal protein S16, chloroplastic OS=Oryza ... [more]
RR16_ORYNI6.757e-2282.0930S ribosomal protein S16, chloroplastic OS=Oryza ... [more]
RR16_SORBI8.825e-2279.1030S ribosomal protein S16, chloroplastic OS=Sorghu... [more]
RR16_SACOF8.825e-2279.1030S ribosomal protein S16, chloroplastic OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F01-L2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069753 ID=CX069753; Name=CX069753; organism=Citrus sinensis; type=EST; length=868bp
CCGTACGAGGAGAAAACTTCTTATACGTTTCTAGGGGGGGTACTGTTCAT
CTATATCTATCCCAATGAGCCGTTTATCGAATCGTTGCAATTGATGGTCG
ATCCCGAAGAGAAGGAAGAGATCTTCGGAAAGTGGGTTTTTATGATCCGA
TAAATAATCAAACCCATTTAAATGTTCCTGCTATTCTATATTTCCTTGCC
AAGGGCGCTCAACCTACAGGAACCGTTCATGATATTTCACAGAAAGCGGG
GGTTTTTACAGAAGTTAGTCTTAATCAAACGAAATTCTATTAAGGAATAG
AACAAAAAAGAGGGTGTGGATGCGCTTTATCTAGTTTTGTATAATTTTTT
CTTTACTATCCCCCCTTTTGTTCTATTCAGACCTATTTCTTTTCGGTTTT
TTTTTGAAGTCTTTCTCTAAAACTCTAAAAAAGTATTCTTAAAGTTTTTT
ATTTATCTAATTCTTTAGATATTATTTATTAATTTCCATATTTATTATAT
CTATTTATTAATATATAATTTGATTTGTTATTTGGATTTGAATTCAATTT
AATAAATAACCAATTAACTCTTTTTGTTTTTGTTATTGTATGTTTTTAGT
ATTTTCTCAATCTTGCTATTCAATATTCAATGTCATATTGACAATATTGT
AGTGAACAAATATAATTTTCTCATGGAGAAATGGGCCCATTTATCTCCGT
TCCATAGGTTTTGGTTGTCTTTTTTTTATGTTCAAAATCGATTAGAAATT
TTTTTGATTCGAGTTCTTGCTAATTTCATTTTTTGATTCCGTTTTGAAAT
TCCTTTTTTTTTTTTATTTTTTTTTATTCCGATTCTATCTACCCATTCGA
ATTATTTGGGTTGCTAAC
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